Wall clock time and date at job start Tue Mar 31 2020 12:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47109 * 89.99781 * 3 2 1 5 5 H 1.48489 * 109.47617 * 210.00323 * 3 2 1 6 6 H 1.48504 * 109.46846 * 330.00478 * 3 2 1 7 7 C 1.38650 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99567 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00269 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99891 * 174.91728 * 9 7 2 11 11 C 1.38955 * 120.03184 * 185.50872 * 10 9 7 12 12 C 1.38120 * 120.07066 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.14256 * 0.02562 * 12 11 10 14 14 C 1.38927 * 120.06413 * 359.97438 * 13 12 11 15 15 N 1.39927 * 120.03500 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99748 * 35.17535 * 15 14 13 17 17 O 1.21281 * 120.00264 * 355.36678 * 16 15 14 18 18 C 1.50698 * 119.99709 * 175.36116 * 16 15 14 19 19 H 1.09000 * 109.60853 * 264.53180 * 18 16 15 20 20 C 1.52990 * 109.60697 * 144.03235 * 18 16 15 21 21 C 1.51786 * 110.87678 * 326.71651 * 20 18 16 22 22 C 1.51791 * 113.80815 * 292.99292 * 21 20 18 23 23 C 1.53056 * 110.74344 * 66.81361 * 22 21 20 24 24 C 1.51428 * 108.49362 * 275.07808 * 23 22 21 25 25 O 1.21281 * 119.89440 * 251.25524 * 24 23 22 26 26 N 1.33370 * 120.21323 * 71.23348 * 24 23 22 27 27 C 1.38734 * 120.03447 * 5.23216 * 10 9 7 28 28 H 0.96990 * 120.00138 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.96409 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.93191 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.97406 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00063 * 215.16987 * 15 14 13 33 33 H 1.08997 * 109.19607 * 87.06850 * 20 18 16 34 34 H 1.08996 * 109.19654 * 206.35906 * 20 18 16 35 35 H 1.09002 * 108.61451 * 171.87707 * 21 20 18 36 36 H 1.08995 * 108.50668 * 54.03571 * 21 20 18 37 37 H 1.08997 * 109.22328 * 306.48244 * 22 21 20 38 38 H 1.09003 * 109.18367 * 187.11453 * 22 21 20 39 39 H 1.09006 * 109.63356 * 155.38033 * 23 22 21 40 40 H 1.09003 * 109.80150 * 34.88037 * 23 22 21 41 41 H 0.97006 * 119.78068 * 180.30928 * 26 24 23 42 42 H 1.07993 * 120.07199 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5470 1.4403 -0.7000 6 1 1.4469 2.6527 -0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4055 0.1056 11 6 5.3562 -2.4710 0.2268 12 6 5.9841 -3.6964 0.3359 13 6 5.2400 -4.8609 0.3244 14 6 3.8573 -4.8021 0.2035 15 7 3.1045 -5.9816 0.1913 16 6 3.4849 -7.0315 0.9459 17 8 4.5238 -6.9851 1.5700 18 6 2.6192 -8.2632 1.0143 19 1 1.9751 -8.2092 1.8920 20 6 3.5038 -9.5085 1.0983 21 6 4.7904 -9.3118 0.3173 22 6 4.5860 -9.2037 -1.1829 23 6 3.8259 -7.9229 -1.5356 24 6 2.3418 -8.1937 -1.4048 25 8 1.6505 -8.2656 -2.3987 26 7 1.7924 -8.3538 -0.2001 27 6 3.2231 -3.5723 0.0994 28 1 -0.4850 0.8399 0.0004 29 1 5.9405 -1.5627 0.2366 30 1 7.0590 -3.7448 0.4296 31 1 5.7338 -5.8176 0.4103 32 1 2.3089 -6.0435 -0.3601 33 1 3.7454 -9.7068 2.1425 34 1 2.9625 -10.3610 0.6883 35 1 5.4519 -10.1544 0.5185 36 1 5.2728 -8.4000 0.6693 37 1 4.0172 -10.0660 -1.5306 38 1 5.5576 -9.1920 -1.6768 39 1 4.0559 -7.6309 -2.5603 40 1 4.1138 -7.1229 -0.8535 41 1 0.8418 -8.5314 -0.1238 42 1 2.1479 -3.5238 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279107088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:12 Heat of formation + Delta-G solvation = -43.726332 kcal Electronic energy + Delta-G solvation = -27392.077406 eV Core-core repulsion = 23532.002565 eV Total energy + Delta-G solvation = -3860.074842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.99633 -39.57912 -38.86245 -37.06675 -36.18308 -34.84795 -34.09788 -32.40538 -31.31359 -29.70287 -29.01928 -27.12785 -25.31494 -24.76703 -23.03459 -21.88983 -21.09191 -20.47315 -19.68554 -18.17419 -17.94596 -17.80412 -17.64883 -16.07467 -15.94745 -15.61511 -15.19441 -15.13492 -14.67450 -14.40667 -14.20593 -14.03581 -13.87621 -13.70584 -13.49537 -13.18534 -12.93772 -12.84983 -12.39734 -12.22335 -12.00166 -11.66131 -11.48603 -11.21152 -11.08412 -10.98009 -10.83549 -10.79433 -10.32696 -10.05814 -9.98828 -9.73232 -9.55997 -9.34065 -8.90392 -7.90744 -7.40528 -6.46885 -4.14724 1.69841 2.16715 2.33439 2.43266 2.86871 2.98833 3.19410 3.23230 3.37446 4.18056 4.18997 4.20108 4.38087 4.39742 4.55668 4.69752 4.78923 4.83678 4.96738 5.04925 5.21945 5.38584 5.45452 5.52286 5.65643 5.69469 5.80944 5.82531 5.84096 5.87813 6.00372 6.08392 6.22337 6.38899 6.43044 6.71336 6.74415 6.86300 7.08041 7.10982 7.39017 7.52804 7.70256 7.92801 7.93381 7.99491 8.88123 9.48928 10.60605 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.003643 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.066300 B = 7683.979815 C = 8397.375675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.259 1.259 6 H -0.282 1.282 7 C -0.392 4.392 8 H 0.105 0.895 9 O -0.214 6.214 10 C 0.174 3.826 11 C -0.196 4.196 12 C -0.065 4.065 13 C -0.198 4.198 14 C 0.170 3.830 15 N -0.668 5.668 16 C 0.511 3.489 17 O -0.501 6.501 18 C 0.124 3.876 19 H 0.131 0.869 20 C -0.115 4.115 21 C -0.156 4.156 22 C -0.108 4.108 23 C -0.182 4.182 24 C 0.518 3.482 25 O -0.538 6.538 26 N -0.725 5.725 27 C -0.241 4.241 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.409 0.591 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.407 0.593 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -18.200 2.160 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.208 1.208 7 C -0.467 4.467 8 H 0.122 0.878 9 O -0.118 6.118 10 C 0.121 3.879 11 C -0.216 4.216 12 C -0.084 4.084 13 C -0.219 4.219 14 C 0.078 3.922 15 N -0.315 5.315 16 C 0.298 3.702 17 O -0.376 6.376 18 C 0.016 3.984 19 H 0.149 0.851 20 C -0.154 4.154 21 C -0.193 4.193 22 C -0.146 4.146 23 C -0.222 4.222 24 C 0.305 3.695 25 O -0.414 6.414 26 N -0.381 5.381 27 C -0.262 4.262 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.246 0.754 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.245 0.755 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.819 -17.823 2.056 19.571 hybrid contribution -0.909 0.555 -0.144 1.074 sum 6.910 -17.267 1.912 18.697 Atomic orbital electron populations 1.69639 1.05592 1.28594 1.47748 1.24463 0.95025 0.98882 0.95510 0.86175 0.80361 0.81346 0.79005 1.19843 1.18272 1.20750 1.20726 0.76838 0.96570 1.52601 0.87783 1.83601 1.22631 1.25322 1.80279 1.18798 0.91478 0.84982 0.92678 1.20287 0.91865 0.98178 1.11226 1.20552 0.98756 0.91296 0.97783 1.20702 0.91527 0.98924 1.10739 1.17440 0.90456 0.84108 1.00225 1.43902 1.29630 1.12862 1.45057 1.20528 0.86756 0.84393 0.78478 1.90681 1.22753 1.80750 1.43415 1.21639 0.93559 0.93748 0.89490 0.85142 1.21576 0.96211 0.95262 1.02372 1.21655 0.97821 1.05528 0.94327 1.21176 1.00627 0.96125 0.96632 1.22853 0.91068 1.01630 1.06688 1.20744 0.91049 0.75150 0.82542 1.90781 1.64003 1.50264 1.36397 1.46072 1.12600 1.73884 1.05575 1.20956 1.01093 0.90442 1.13725 0.90984 0.86291 0.86297 0.85593 0.75379 0.89478 0.90333 0.91337 0.88080 0.91935 0.90482 0.88140 0.86306 0.75540 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 13.96 55.48 0.77 -24.19 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.33 28.62 -169.99 -4.86 16.46 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.39 -10.80 9.94 30.88 0.31 -10.49 16 8 H 0.10 2.92 5.43 -52.48 -0.29 2.64 16 9 O -0.21 -5.49 8.58 0.04 0.00 -5.49 16 10 C 0.17 3.88 6.65 -39.13 -0.26 3.62 16 11 C -0.20 -3.75 9.99 -39.36 -0.39 -4.14 16 12 C -0.07 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.20 -3.33 8.47 -39.34 -0.33 -3.67 16 14 C 0.17 2.99 6.15 -83.72 -0.51 2.47 16 15 N -0.67 -9.39 3.35 -9.88 -0.03 -9.43 16 16 C 0.51 6.27 4.04 -10.98 -0.04 6.22 16 17 O -0.50 -7.22 11.52 5.56 0.06 -7.16 16 18 C 0.12 1.03 3.80 -68.71 -0.26 0.77 16 19 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.12 -0.84 5.34 -27.35 -0.15 -0.99 16 21 C -0.16 -1.36 5.17 -27.96 -0.14 -1.50 16 22 C -0.11 -0.99 5.67 -27.32 -0.15 -1.14 16 23 C -0.18 -2.07 5.33 -27.50 -0.15 -2.21 16 24 C 0.52 6.32 5.52 -11.25 -0.06 6.26 16 25 O -0.54 -8.69 17.92 5.56 0.10 -8.59 16 26 N -0.72 -6.49 4.61 -54.57 -0.25 -6.74 16 27 C -0.24 -4.99 9.08 -39.21 -0.36 -5.35 16 28 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.13 1.98 6.22 -52.48 -0.33 1.66 16 32 H 0.41 5.46 6.84 -40.82 -0.28 5.18 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.11 4.75 -51.93 -0.25 0.86 16 37 H 0.06 0.56 7.86 -51.93 -0.41 0.15 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.18 8.13 -51.93 -0.42 0.75 16 40 H 0.12 1.47 3.03 -51.93 -0.16 1.31 16 41 H 0.41 2.99 8.91 -40.82 -0.36 2.63 16 42 H 0.14 2.95 5.63 -52.49 -0.30 2.65 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -32.04 332.39 -7.08 -39.12 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.87 Total: 10.94 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.00 Total: -9.93 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.49 Total: -40.36 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.16 Total: -21.24 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.04 -7.08 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279107088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.611 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds