Wall clock time and date at job start Tue Mar 31 2020 12:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47109 * 89.99781 * 3 2 1 5 5 H 1.48489 * 109.47617 * 210.00323 * 3 2 1 6 6 H 1.48504 * 109.46846 * 330.00478 * 3 2 1 7 7 C 1.38650 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99567 * 359.97438 * 7 2 1 9 9 O 1.34830 * 120.00269 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99891 * 174.91728 * 9 7 2 11 11 C 1.38955 * 120.03184 * 185.50872 * 10 9 7 12 12 C 1.38120 * 120.07066 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.14256 * 0.02562 * 12 11 10 14 14 C 1.38927 * 120.06413 * 359.97438 * 13 12 11 15 15 N 1.39927 * 120.03500 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99748 * 35.17535 * 15 14 13 17 17 O 1.21281 * 120.00264 * 355.36678 * 16 15 14 18 18 C 1.50698 * 119.99709 * 175.36116 * 16 15 14 19 19 H 1.09000 * 109.60853 * 264.53180 * 18 16 15 20 20 C 1.52990 * 109.60697 * 144.03235 * 18 16 15 21 21 C 1.51786 * 110.87678 * 326.71651 * 20 18 16 22 22 C 1.51791 * 113.80815 * 292.99292 * 21 20 18 23 23 C 1.53056 * 110.74344 * 66.81361 * 22 21 20 24 24 C 1.51428 * 108.49362 * 275.07808 * 23 22 21 25 25 O 1.21281 * 119.89440 * 251.25524 * 24 23 22 26 26 N 1.33370 * 120.21323 * 71.23348 * 24 23 22 27 27 C 1.38734 * 120.03447 * 5.23216 * 10 9 7 28 28 H 0.96990 * 120.00138 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.96409 * 0.02562 * 11 10 9 30 30 H 1.08002 * 119.93191 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.97406 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00063 * 215.16987 * 15 14 13 33 33 H 1.08997 * 109.19607 * 87.06850 * 20 18 16 34 34 H 1.08996 * 109.19654 * 206.35906 * 20 18 16 35 35 H 1.09002 * 108.61451 * 171.87707 * 21 20 18 36 36 H 1.08995 * 108.50668 * 54.03571 * 21 20 18 37 37 H 1.08997 * 109.22328 * 306.48244 * 22 21 20 38 38 H 1.09003 * 109.18367 * 187.11453 * 22 21 20 39 39 H 1.09006 * 109.63356 * 155.38033 * 23 22 21 40 40 H 1.09003 * 109.80150 * 34.88037 * 23 22 21 41 41 H 0.97006 * 119.78068 * 180.30928 * 26 24 23 42 42 H 1.07993 * 120.07199 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 1.4001 5 1 3.5470 1.4403 -0.7000 6 1 1.4469 2.6527 -0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 -0.0011 10 6 3.9735 -2.4055 0.1056 11 6 5.3562 -2.4710 0.2268 12 6 5.9841 -3.6964 0.3359 13 6 5.2400 -4.8609 0.3244 14 6 3.8573 -4.8021 0.2035 15 7 3.1045 -5.9816 0.1913 16 6 3.4849 -7.0315 0.9459 17 8 4.5238 -6.9851 1.5700 18 6 2.6192 -8.2632 1.0143 19 1 1.9751 -8.2092 1.8920 20 6 3.5038 -9.5085 1.0983 21 6 4.7904 -9.3118 0.3173 22 6 4.5860 -9.2037 -1.1829 23 6 3.8259 -7.9229 -1.5356 24 6 2.3418 -8.1937 -1.4048 25 8 1.6505 -8.2656 -2.3987 26 7 1.7924 -8.3538 -0.2001 27 6 3.2231 -3.5723 0.0994 28 1 -0.4850 0.8399 0.0004 29 1 5.9405 -1.5627 0.2366 30 1 7.0590 -3.7448 0.4296 31 1 5.7338 -5.8176 0.4103 32 1 2.3089 -6.0435 -0.3601 33 1 3.7454 -9.7068 2.1425 34 1 2.9625 -10.3610 0.6883 35 1 5.4519 -10.1544 0.5185 36 1 5.2728 -8.4000 0.6693 37 1 4.0172 -10.0660 -1.5306 38 1 5.5576 -9.1920 -1.6768 39 1 4.0559 -7.6309 -2.5603 40 1 4.1138 -7.1229 -0.8535 41 1 0.8418 -8.5314 -0.1238 42 1 2.1479 -3.5238 0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279107088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:11 Heat of formation + Delta-G solvation = -66.008707 kcal Electronic energy + Delta-G solvation = -27393.043643 eV Core-core repulsion = 23532.002565 eV Total energy + Delta-G solvation = -3861.041078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.98979 -40.97573 -40.18061 -38.49557 -37.23142 -36.02863 -34.99728 -34.41373 -32.15456 -31.15190 -30.53854 -28.06779 -27.20236 -25.60312 -24.15566 -23.44577 -22.29090 -21.33646 -20.82982 -19.78372 -19.42700 -18.85477 -18.69283 -17.42290 -17.17051 -16.72780 -16.56205 -16.32264 -16.04722 -15.71410 -15.51218 -15.26564 -15.16710 -14.83020 -14.75381 -14.43714 -14.22141 -13.99010 -13.72585 -13.68602 -13.23023 -12.88774 -12.79813 -12.59648 -12.48967 -12.13456 -12.03832 -11.82396 -11.60249 -11.49257 -11.16957 -11.00764 -10.90084 -10.81165 -10.29126 -9.40814 -8.97408 -8.51352 -6.24705 0.31400 0.63223 1.30103 1.32237 1.35805 1.36756 1.52379 1.85746 2.09972 2.27633 2.75361 3.01059 3.13724 3.27067 3.34249 3.68386 3.83363 3.95938 4.06371 4.09764 4.25680 4.28268 4.38779 4.46412 4.58014 4.60801 4.67462 4.81441 4.90700 4.94428 5.01045 5.15463 5.21534 5.29210 5.32031 5.39406 5.51755 5.63223 5.67555 5.73716 5.85261 5.93635 6.17555 6.24388 6.82882 6.84588 7.02746 7.55743 8.60011 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.003643 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.066300 B = 7683.979815 C = 8397.375675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.269 1.269 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.240 6.240 10 C 0.138 3.862 11 C -0.199 4.199 12 C -0.052 4.052 13 C -0.185 4.185 14 C 0.175 3.825 15 N -0.671 5.671 16 C 0.510 3.490 17 O -0.517 6.517 18 C 0.131 3.869 19 H 0.166 0.834 20 C -0.113 4.113 21 C -0.155 4.155 22 C -0.104 4.104 23 C -0.182 4.182 24 C 0.518 3.482 25 O -0.585 6.585 26 N -0.710 5.710 27 C -0.257 4.257 28 H 0.285 0.715 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.146 0.854 32 H 0.411 0.589 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.418 0.582 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.675 -20.205 3.354 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.147 6.147 10 C 0.088 3.912 11 C -0.218 4.218 12 C -0.070 4.070 13 C -0.206 4.206 14 C 0.082 3.918 15 N -0.317 5.317 16 C 0.300 3.700 17 O -0.392 6.392 18 C 0.023 3.977 19 H 0.183 0.817 20 C -0.152 4.152 21 C -0.192 4.192 22 C -0.142 4.142 23 C -0.222 4.222 24 C 0.306 3.694 25 O -0.465 6.465 26 N -0.365 5.365 27 C -0.279 4.279 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.163 0.837 32 H 0.248 0.752 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.257 0.743 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.126 -19.892 3.293 22.562 hybrid contribution -1.439 0.858 -0.469 1.740 sum 8.687 -19.034 2.824 21.112 Atomic orbital electron populations 1.69722 1.06925 1.29630 1.49977 1.25266 0.95853 1.02154 0.95399 0.85227 0.78890 0.77380 0.79311 1.19040 1.18500 1.19357 1.20672 0.78078 0.96051 1.52847 0.90231 1.83544 1.21217 1.27042 1.82894 1.19378 0.93010 0.84540 0.94222 1.20597 0.90447 1.00066 1.10703 1.21053 1.00887 0.89861 0.95220 1.21083 0.91023 1.00032 1.08442 1.17505 0.91226 0.84298 0.98813 1.43997 1.29607 1.12348 1.45784 1.21248 0.86876 0.84626 0.77256 1.90673 1.23620 1.81089 1.43846 1.21878 0.93705 0.92118 0.89987 0.81676 1.21641 0.95385 0.94680 1.03461 1.21632 0.98752 1.05202 0.93641 1.21189 1.00722 0.94799 0.97450 1.22830 0.90923 1.02602 1.05890 1.20901 0.91206 0.74551 0.82768 1.90765 1.64944 1.52674 1.38094 1.45975 1.13284 1.72282 1.04963 1.20919 1.00108 0.91776 1.15068 0.90571 0.84807 0.81904 0.83673 0.75183 0.87638 0.88694 0.89602 0.90085 0.91527 0.89604 0.89167 0.87180 0.74322 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 13.96 21.61 0.30 -54.33 16 2 C 0.01 0.68 5.49 84.83 0.47 1.15 16 3 Si 0.97 44.96 28.62 68.60 1.96 46.92 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.40 -23.29 9.94 67.92 0.68 -22.62 16 8 H 0.08 4.85 5.43 -2.91 -0.02 4.83 16 9 O -0.24 -12.80 8.58 -22.76 -0.20 -13.00 16 10 C 0.14 6.34 6.65 22.56 0.15 6.49 16 11 C -0.20 -7.35 9.99 22.41 0.22 -7.13 16 12 C -0.05 -1.56 10.03 22.23 0.22 -1.34 16 13 C -0.19 -5.79 8.47 22.43 0.19 -5.60 16 14 C 0.18 6.09 6.15 38.14 0.23 6.32 16 15 N -0.67 -18.40 3.35 -303.55 -1.02 -19.42 16 16 C 0.51 11.41 4.04 87.66 0.35 11.77 16 17 O -0.52 -13.46 11.52 -3.03 -0.03 -13.50 16 18 C 0.13 1.77 3.80 44.11 0.17 1.93 16 19 H 0.17 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.11 -1.20 5.34 30.19 0.16 -1.04 16 21 C -0.16 -2.17 5.17 29.80 0.15 -2.02 16 22 C -0.10 -1.66 5.67 30.22 0.17 -1.49 16 23 C -0.18 -3.93 5.33 30.10 0.16 -3.77 16 24 C 0.52 12.21 5.52 88.11 0.49 12.69 16 25 O -0.58 -19.03 17.92 -3.03 -0.05 -19.09 16 26 N -0.71 -11.31 4.61 -445.72 -2.06 -13.37 16 27 C -0.26 -11.08 9.08 22.51 0.20 -10.88 16 28 H 0.28 15.49 8.31 -92.72 -0.77 14.72 16 29 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.15 4.08 6.22 -2.91 -0.02 4.06 16 32 H 0.41 11.04 6.84 -92.71 -0.63 10.41 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.79 8.05 -2.39 -0.02 0.77 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.52 4.75 -2.39 -0.01 1.51 16 37 H 0.07 1.03 7.86 -2.39 -0.02 1.01 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 2.11 8.13 -2.38 -0.02 2.09 16 40 H 0.11 2.57 3.03 -2.39 -0.01 2.57 16 41 H 0.42 5.31 8.91 -92.70 -0.83 4.48 16 42 H 0.11 5.29 5.63 -2.91 -0.02 5.28 16 Total: -1.00 -73.47 332.39 2.57 -70.90 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: -0.36 Total: 30.40 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.02 Total: -15.52 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.77 Total: -87.12 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.28 Total: -45.58 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.92 kcal Total: -73.47 2.57 -70.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279107088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.894 kcal (2) G-P(sol) polarization free energy of solvation -73.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds