Wall clock time and date at job start Tue Mar 31 2020 13:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37990 * 120.01484 * 2 1 4 4 C 1.38846 * 120.02878 * 179.97438 * 3 2 1 5 5 O 1.35910 * 119.96844 * 179.97438 * 4 3 2 6 6 C 1.42902 * 116.99566 * 184.26744 * 5 4 3 7 7 H 1.08997 * 110.43857 * 326.33418 * 6 5 4 8 8 C 1.54625 * 110.48677 * 203.79163 * 6 5 4 9 9 C 1.54490 * 101.76362 * 266.12000 * 8 6 5 10 10 N 1.46762 * 105.47385 * 334.58624 * 9 8 6 11 11 C 1.46497 * 124.34827 * 197.02048 * 10 9 8 12 12 C 1.34421 * 111.30001 * 17.27683 * 10 9 8 13 13 O 1.21285 * 124.94079 * 179.30257 * 12 10 9 14 14 C 1.38887 * 120.05905 * 0.25225 * 4 3 2 15 15 C 1.37948 * 120.02339 * 359.49038 * 14 4 3 16 16 C 1.39079 * 120.01684 * 179.97438 * 2 1 3 17 17 N 1.39520 * 120.02890 * 0.04503 * 16 2 1 18 18 C 1.34775 * 120.00120 * 214.54178 * 17 16 2 19 19 O 1.21778 * 119.99990 * 355.93408 * 18 17 16 20 20 C 1.41771 * 119.99776 * 175.93876 * 18 17 16 21 21 H 1.08000 * 120.00303 * 0.02562 * 20 18 17 22 22 C 1.40141 * 119.99891 * 179.97438 * 20 18 17 23 23 N 1.30625 * 120.00152 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99965 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46811 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46716 * 119.99984 * 24 22 20 27 27 H 1.48497 * 109.47156 * 239.99832 * 24 22 20 28 28 H 1.08998 * 109.46749 * 89.99876 * 1 2 3 29 29 H 1.08994 * 109.46955 * 210.00371 * 1 2 3 30 30 H 1.08999 * 109.46719 * 330.00211 * 1 2 3 31 31 H 1.07997 * 119.98725 * 359.97438 * 3 2 1 32 32 H 1.08998 * 110.97452 * 148.00369 * 8 6 5 33 33 H 1.08997 * 110.96631 * 24.23404 * 8 6 5 34 34 H 1.08995 * 110.24240 * 215.58202 * 9 8 6 35 35 H 1.09001 * 110.24214 * 93.58403 * 9 8 6 36 36 H 1.09001 * 109.47206 * 89.99614 * 11 10 9 37 37 H 1.09001 * 109.47049 * 329.99254 * 11 10 9 38 38 H 1.09004 * 109.46923 * 209.99615 * 11 10 9 39 39 H 1.07993 * 119.98476 * 179.75208 * 14 4 3 40 40 H 1.07999 * 120.00952 * 180.25516 * 15 14 4 41 41 H 0.96998 * 119.99834 * 34.53509 * 17 16 2 42 42 H 0.97000 * 120.00546 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1948 0.0000 4 6 3.5857 1.1952 0.0005 5 8 4.2643 2.3727 0.0000 6 6 5.6884 2.3007 -0.0941 7 1 6.0592 1.4124 0.4173 8 6 6.3350 3.5749 0.4968 9 6 6.5032 4.4553 -0.7614 10 7 6.5803 3.5178 -1.8879 11 6 7.0894 3.8632 -3.2174 12 6 6.1186 2.3029 -1.5446 13 8 6.0581 1.3470 -2.2887 14 6 4.2817 -0.0067 -0.0042 15 6 3.5940 -1.2025 0.0011 16 6 2.2028 -1.2043 0.0005 17 7 1.5061 -2.4131 0.0001 18 6 2.0022 -3.4770 0.6623 19 8 3.0931 -3.4058 1.1987 20 6 1.2539 -4.6790 0.7343 21 1 0.2866 -4.7423 0.2582 22 6 1.7699 -5.7854 1.4224 23 7 2.9406 -5.7094 1.9970 24 14 0.7837 -7.3690 1.5179 25 1 -0.4994 -7.1976 0.7903 26 1 1.5596 -8.4734 0.8988 27 1 0.5071 -7.6950 2.9400 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6573 2.1301 -0.0004 32 1 7.3017 3.3490 0.9469 33 1 5.6714 4.0498 1.2194 34 1 7.4210 5.0393 -0.6931 35 1 5.6433 5.1149 -0.8778 36 1 8.1626 3.6763 -3.2555 37 1 6.8968 4.9172 -3.4177 38 1 6.5874 3.2531 -3.9685 39 1 5.3616 -0.0050 -0.0078 40 1 4.1354 -2.1370 0.0016 41 1 0.6647 -2.4878 -0.4767 42 1 3.2976 -6.4751 2.4736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281813037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:10 Heat of formation + Delta-G solvation = -68.020837 kcal Electronic energy + Delta-G solvation = -26329.504033 eV Core-core repulsion = 22468.375702 eV Total energy + Delta-G solvation = -3861.128330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98431 -39.45554 -38.07417 -36.66262 -36.24328 -33.28168 -32.56873 -32.23101 -31.72028 -28.76830 -27.53259 -27.01298 -26.43997 -25.76699 -22.52202 -22.27747 -20.89267 -19.93822 -19.48862 -17.94271 -17.63563 -16.89028 -16.27641 -15.93604 -15.86095 -15.56904 -15.19957 -14.59389 -14.11591 -14.01492 -13.76753 -13.58412 -13.33244 -13.04591 -12.89664 -12.81785 -12.71804 -12.61353 -12.50758 -12.36179 -11.90233 -11.80064 -11.49375 -11.37303 -11.16071 -11.13918 -10.86943 -10.60293 -10.32410 -10.26240 -9.78457 -9.05564 -8.96693 -8.60418 -8.21924 -7.61938 -6.72608 -6.33455 -4.85766 1.95237 2.09487 2.26601 2.73669 3.06089 3.14749 3.19309 3.47931 4.00935 4.03688 4.13954 4.31122 4.50349 4.56277 4.77668 4.79895 4.94419 5.03820 5.12008 5.20657 5.40356 5.44354 5.45608 5.50375 5.52654 5.66158 5.75596 5.83479 5.95557 6.02607 6.23404 6.24689 6.37935 6.69704 6.73852 6.81058 7.05791 7.18190 7.25192 7.30171 7.71513 7.92882 7.97485 8.09829 8.30375 8.84267 9.36124 10.42610 10.64207 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002849 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.998685 B = 9824.044642 C =10345.527920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.069 3.931 5 O -0.296 6.296 6 C 0.052 3.948 7 H 0.111 0.889 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.622 5.622 11 C 0.096 3.904 12 C 0.499 3.501 13 O -0.506 6.506 14 C -0.172 4.172 15 C -0.088 4.088 16 C 0.166 3.834 17 N -0.699 5.699 18 C 0.545 3.455 19 O -0.568 6.568 20 C -0.539 4.539 21 H 0.070 0.930 22 C 0.088 3.912 23 N -0.748 5.748 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.147 0.853 41 H 0.391 0.609 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 19.991 -4.521 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.025 3.975 5 O -0.210 6.210 6 C -0.008 4.008 7 H 0.129 0.871 8 C -0.167 4.167 9 C -0.018 4.018 10 N -0.359 5.359 11 C -0.045 4.045 12 C 0.284 3.716 13 O -0.380 6.380 14 C -0.191 4.191 15 C -0.109 4.109 16 C 0.068 3.932 17 N -0.343 5.343 18 C 0.354 3.646 19 O -0.452 6.452 20 C -0.574 4.574 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.376 5.376 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.165 0.835 41 H 0.224 0.776 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.386 19.522 -4.462 20.737 hybrid contribution -0.633 -0.846 -0.217 1.078 sum 4.753 18.676 -4.679 19.831 Atomic orbital electron populations 1.20615 0.91189 1.02713 1.01632 1.19431 0.95654 0.91344 1.05352 1.19779 0.90180 0.97448 1.07055 1.18771 0.91444 0.83841 1.03452 1.86069 1.16480 1.29188 1.89263 1.22985 0.82379 1.01584 0.93881 0.87106 1.22740 1.02041 0.94334 0.97538 1.22117 1.02572 0.92284 0.84855 1.48130 1.63657 1.11808 1.12342 1.21544 0.98998 1.01261 0.82733 1.21373 0.77050 0.82575 0.90590 1.90779 1.53497 1.36570 1.57150 1.21039 0.99480 0.91864 1.06715 1.21316 0.93200 0.98460 0.97935 1.17759 0.91375 0.86166 0.97948 1.44059 1.25389 1.09740 1.55097 1.17056 0.86705 0.82378 0.78469 1.90625 1.22166 1.82593 1.49800 1.20071 1.05304 0.96400 1.35625 0.91199 1.25760 0.94496 0.99930 0.93287 1.70020 1.14939 1.29928 1.22682 0.86246 0.80422 0.81118 0.78622 1.18582 1.19971 1.19975 0.91836 0.91232 0.91934 0.86116 0.88237 0.87547 0.90019 0.90593 0.92518 0.90993 0.90615 0.86187 0.83521 0.77595 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.47 36.01 0.34 -1.22 16 2 C -0.11 -2.13 5.90 -104.40 -0.62 -2.75 16 3 C -0.13 -2.21 9.63 -39.45 -0.38 -2.59 16 4 C 0.07 1.26 6.66 -39.12 -0.26 1.00 16 5 O -0.30 -4.59 9.84 -19.46 -0.19 -4.78 16 6 C 0.05 0.67 2.86 -26.74 -0.08 0.60 16 7 H 0.11 1.46 5.82 -51.93 -0.30 1.16 16 8 C -0.13 -0.99 6.92 -25.09 -0.17 -1.16 16 9 C 0.10 0.73 7.35 -3.12 -0.02 0.71 16 10 N -0.62 -6.57 3.33 -180.28 -0.60 -7.17 16 11 C 0.10 0.79 10.97 59.85 0.66 1.45 16 12 C 0.50 7.26 7.66 -10.86 -0.08 7.18 16 13 O -0.51 -9.58 17.46 5.55 0.10 -9.48 16 14 C -0.17 -3.45 8.92 -39.45 -0.35 -3.80 16 15 C -0.09 -2.04 8.69 -39.36 -0.34 -2.39 16 16 C 0.17 3.70 6.29 -83.72 -0.53 3.17 16 17 N -0.70 -16.28 4.73 -12.40 -0.06 -16.34 16 18 C 0.55 15.37 7.41 -14.91 -0.11 15.26 16 19 O -0.57 -17.94 12.28 5.12 0.06 -17.87 16 20 C -0.54 -14.84 9.31 -37.52 -0.35 -15.19 16 21 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 22 C 0.09 2.39 5.50 -17.35 -0.10 2.29 16 23 N -0.75 -21.78 11.73 55.56 0.65 -21.13 16 24 Si 0.91 19.57 29.56 -169.99 -5.02 14.54 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.09 7.17 -51.93 -0.37 0.72 16 30 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 39 H 0.12 2.23 5.81 -52.49 -0.30 1.93 16 40 H 0.15 3.83 6.19 -52.49 -0.32 3.51 16 41 H 0.39 7.87 7.79 -40.82 -0.32 7.55 16 42 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -36.75 353.71 -7.50 -44.25 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.38 Total: 10.08 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.39 Total: 2.56 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.01 Total: -44.63 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.03 Total: -32.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.75 -7.50 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281813037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.767 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds