Wall clock time and date at job start Tue Mar 31 2020 13:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37990 * 120.01484 * 2 1 4 4 C 1.38846 * 120.02878 * 179.97438 * 3 2 1 5 5 O 1.35910 * 119.96844 * 179.97438 * 4 3 2 6 6 C 1.42902 * 116.99566 * 184.26744 * 5 4 3 7 7 H 1.08997 * 110.43857 * 326.33418 * 6 5 4 8 8 C 1.54625 * 110.48677 * 203.79163 * 6 5 4 9 9 C 1.54490 * 101.76362 * 266.12000 * 8 6 5 10 10 N 1.46762 * 105.47385 * 334.58624 * 9 8 6 11 11 C 1.46497 * 124.34827 * 197.02048 * 10 9 8 12 12 C 1.34421 * 111.30001 * 17.27683 * 10 9 8 13 13 O 1.21285 * 124.94079 * 179.30257 * 12 10 9 14 14 C 1.38887 * 120.05905 * 0.25225 * 4 3 2 15 15 C 1.37948 * 120.02339 * 359.49038 * 14 4 3 16 16 C 1.39079 * 120.01684 * 179.97438 * 2 1 3 17 17 N 1.39520 * 120.02890 * 0.04503 * 16 2 1 18 18 C 1.34775 * 120.00120 * 214.54178 * 17 16 2 19 19 O 1.21778 * 119.99990 * 355.93408 * 18 17 16 20 20 C 1.41771 * 119.99776 * 175.93876 * 18 17 16 21 21 H 1.08000 * 120.00303 * 0.02562 * 20 18 17 22 22 C 1.40141 * 119.99891 * 179.97438 * 20 18 17 23 23 N 1.30625 * 120.00152 * 359.97438 * 22 20 18 24 24 Si 1.86806 * 119.99965 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46811 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46716 * 119.99984 * 24 22 20 27 27 H 1.48497 * 109.47156 * 239.99832 * 24 22 20 28 28 H 1.08998 * 109.46749 * 89.99876 * 1 2 3 29 29 H 1.08994 * 109.46955 * 210.00371 * 1 2 3 30 30 H 1.08999 * 109.46719 * 330.00211 * 1 2 3 31 31 H 1.07997 * 119.98725 * 359.97438 * 3 2 1 32 32 H 1.08998 * 110.97452 * 148.00369 * 8 6 5 33 33 H 1.08997 * 110.96631 * 24.23404 * 8 6 5 34 34 H 1.08995 * 110.24240 * 215.58202 * 9 8 6 35 35 H 1.09001 * 110.24214 * 93.58403 * 9 8 6 36 36 H 1.09001 * 109.47206 * 89.99614 * 11 10 9 37 37 H 1.09001 * 109.47049 * 329.99254 * 11 10 9 38 38 H 1.09004 * 109.46923 * 209.99615 * 11 10 9 39 39 H 1.07993 * 119.98476 * 179.75208 * 14 4 3 40 40 H 1.07999 * 120.00952 * 180.25516 * 15 14 4 41 41 H 0.96998 * 119.99834 * 34.53509 * 17 16 2 42 42 H 0.97000 * 120.00546 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1948 0.0000 4 6 3.5857 1.1952 0.0005 5 8 4.2643 2.3727 0.0000 6 6 5.6884 2.3007 -0.0941 7 1 6.0592 1.4124 0.4173 8 6 6.3350 3.5749 0.4968 9 6 6.5032 4.4553 -0.7614 10 7 6.5803 3.5178 -1.8879 11 6 7.0894 3.8632 -3.2174 12 6 6.1186 2.3029 -1.5446 13 8 6.0581 1.3470 -2.2887 14 6 4.2817 -0.0067 -0.0042 15 6 3.5940 -1.2025 0.0011 16 6 2.2028 -1.2043 0.0005 17 7 1.5061 -2.4131 0.0001 18 6 2.0022 -3.4770 0.6623 19 8 3.0931 -3.4058 1.1987 20 6 1.2539 -4.6790 0.7343 21 1 0.2866 -4.7423 0.2582 22 6 1.7699 -5.7854 1.4224 23 7 2.9406 -5.7094 1.9970 24 14 0.7837 -7.3690 1.5179 25 1 -0.4994 -7.1976 0.7903 26 1 1.5596 -8.4734 0.8988 27 1 0.5071 -7.6950 2.9400 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6573 2.1301 -0.0004 32 1 7.3017 3.3490 0.9469 33 1 5.6714 4.0498 1.2194 34 1 7.4210 5.0393 -0.6931 35 1 5.6433 5.1149 -0.8778 36 1 8.1626 3.6763 -3.2555 37 1 6.8968 4.9172 -3.4177 38 1 6.5874 3.2531 -3.9685 39 1 5.3616 -0.0050 -0.0078 40 1 4.1354 -2.1370 0.0016 41 1 0.6647 -2.4878 -0.4767 42 1 3.2976 -6.4751 2.4736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281813037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:09 Heat of formation + Delta-G solvation = -94.877038 kcal Electronic energy + Delta-G solvation = -26330.668605 eV Core-core repulsion = 22468.375702 eV Total energy + Delta-G solvation = -3862.292903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.08296 -40.98886 -39.65058 -38.15189 -37.48637 -35.10920 -34.46889 -33.33673 -33.19482 -30.34798 -28.87812 -28.17448 -27.46711 -27.35252 -24.04834 -23.43179 -22.18052 -21.66693 -20.66972 -19.49485 -19.20039 -18.08249 -17.79067 -17.60483 -17.04391 -16.87419 -16.55651 -15.95319 -15.57918 -15.25683 -15.13064 -14.81599 -14.76012 -14.51601 -14.41441 -14.09525 -13.97278 -13.83002 -13.60377 -13.37392 -13.19562 -13.14870 -12.86176 -12.72498 -12.68903 -12.53087 -12.35484 -12.24853 -11.98758 -11.75124 -11.11995 -10.94624 -10.37391 -9.90682 -9.79818 -9.63146 -8.44682 -8.37402 -7.00983 0.38955 0.51625 1.11315 1.38128 1.38881 1.57505 1.91312 2.20581 2.33992 2.36239 2.81546 3.02034 3.18718 3.36959 3.63324 3.71215 3.92183 3.96335 4.09126 4.17937 4.30911 4.32319 4.40611 4.56160 4.58825 4.67316 4.80394 4.81610 4.86091 4.93349 4.99209 5.03889 5.13810 5.21723 5.30369 5.43973 5.49189 5.59784 5.67471 5.88889 5.91868 6.17526 6.23417 6.50055 6.73656 6.95168 7.42355 8.39627 8.57758 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002849 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.998685 B = 9824.044642 C =10345.527920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.100 4.100 3 C -0.123 4.123 4 C 0.082 3.918 5 O -0.288 6.288 6 C 0.038 3.962 7 H 0.098 0.902 8 C -0.116 4.116 9 C 0.100 3.900 10 N -0.614 5.614 11 C 0.089 3.911 12 C 0.483 3.517 13 O -0.568 6.568 14 C -0.182 4.182 15 C -0.118 4.118 16 C 0.128 3.872 17 N -0.690 5.690 18 C 0.529 3.471 19 O -0.616 6.616 20 C -0.564 4.564 21 H 0.091 0.909 22 C 0.030 3.970 23 N -0.803 5.803 24 Si 1.003 2.997 25 H -0.244 1.244 26 H -0.268 1.268 27 H -0.266 1.266 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.405 0.595 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 23.087 -4.451 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.142 4.142 4 C 0.037 3.963 5 O -0.202 6.202 6 C -0.022 4.022 7 H 0.116 0.884 8 C -0.153 4.153 9 C -0.021 4.021 10 N -0.348 5.348 11 C -0.051 4.051 12 C 0.269 3.731 13 O -0.447 6.447 14 C -0.201 4.201 15 C -0.139 4.139 16 C 0.031 3.969 17 N -0.335 5.335 18 C 0.338 3.662 19 O -0.503 6.503 20 C -0.599 4.599 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.431 5.431 24 Si 0.822 3.178 25 H -0.167 1.167 26 H -0.193 1.193 27 H -0.191 1.191 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.240 0.760 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.801 22.736 -4.412 23.470 hybrid contribution -0.004 -1.551 -0.294 1.579 sum 3.797 21.185 -4.706 22.031 Atomic orbital electron populations 1.20717 0.88010 1.03730 1.03462 1.19853 0.97862 0.90040 1.02581 1.20245 0.89951 0.98561 1.05423 1.18915 0.92214 0.83976 1.01195 1.86076 1.18138 1.27310 1.88681 1.23355 0.80914 1.04258 0.93645 0.88423 1.22891 1.02880 0.91365 0.98195 1.22479 1.05248 0.91599 0.82744 1.48356 1.61456 1.10993 1.14027 1.21759 0.99405 1.02903 0.81080 1.21727 0.77233 0.83180 0.90934 1.90742 1.56434 1.38846 1.58717 1.21028 0.99759 0.91931 1.07405 1.21050 0.94201 0.97770 1.00898 1.17998 0.91141 0.87071 1.00723 1.43582 1.25766 1.09411 1.54776 1.17473 0.86344 0.83849 0.78539 1.90591 1.24058 1.83784 1.51910 1.20596 1.06218 0.96818 1.36278 0.89074 1.27069 0.95499 1.04248 0.91993 1.70182 1.17385 1.31723 1.23827 0.84890 0.78853 0.74969 0.79092 1.16722 1.19322 1.19061 0.89436 0.92236 0.88864 0.82103 0.85834 0.85783 0.86111 0.89181 0.91192 0.87339 0.92988 0.86046 0.88142 0.75977 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.79 9.47 71.24 0.67 -2.12 16 2 C -0.10 -3.66 5.90 -19.72 -0.12 -3.78 16 3 C -0.12 -4.10 9.63 22.36 0.22 -3.88 16 4 C 0.08 2.99 6.66 22.57 0.15 3.14 16 5 O -0.29 -8.55 9.84 -92.54 -0.91 -9.46 16 6 C 0.04 0.96 2.86 30.59 0.09 1.05 16 7 H 0.10 2.69 5.82 -2.39 -0.01 2.67 16 8 C -0.12 -1.40 6.92 31.65 0.22 -1.18 16 9 C 0.10 0.98 7.35 86.84 0.64 1.62 16 10 N -0.61 -11.71 3.33 -842.86 -2.81 -14.52 16 11 C 0.09 1.29 10.97 127.77 1.40 2.70 16 12 C 0.48 14.14 7.66 87.90 0.67 14.82 16 13 O -0.57 -22.83 17.46 -3.05 -0.05 -22.88 16 14 C -0.18 -7.82 8.92 22.36 0.20 -7.62 16 15 C -0.12 -5.97 8.69 22.41 0.19 -5.77 16 16 C 0.13 5.97 6.29 38.33 0.24 6.21 16 17 N -0.69 -33.72 4.73 -311.33 -1.47 -35.19 16 18 C 0.53 31.61 7.41 85.12 0.63 32.24 16 19 O -0.62 -42.02 12.28 -4.60 -0.06 -42.07 16 20 C -0.56 -32.04 9.31 23.61 0.22 -31.82 16 21 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 22 C 0.03 1.65 5.50 85.33 0.47 2.12 16 23 N -0.80 -49.00 11.73 21.85 0.26 -48.75 16 24 Si 1.00 40.50 29.56 68.60 2.03 42.53 16 25 H -0.24 -9.07 7.11 99.48 0.71 -8.36 16 26 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 1.76 7.17 -2.39 -0.02 1.75 16 30 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 31 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 1.13 8.10 -2.39 -0.02 1.12 16 34 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.05 1.02 7.92 -2.38 -0.02 1.00 16 39 H 0.12 5.00 5.81 -2.91 -0.02 4.98 16 40 H 0.10 5.94 6.19 -2.91 -0.02 5.93 16 41 H 0.40 16.73 7.79 -92.71 -0.72 16.00 16 42 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 Total: -1.00 -89.46 353.71 3.22 -86.24 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: 0.34 Total: 36.38 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.90 Total: 7.72 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -4.02 Total: -98.46 kcal Atomic # 8 Polarization: -73.39 SS G_CDS: -1.02 Total: -74.41 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -89.46 3.22 -86.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281813037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -89.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds