Wall clock time and date at job start Tue Mar 31 2020 13:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37985 * 120.01163 * 2 1 4 4 C 1.38848 * 120.02804 * 180.02562 * 3 2 1 5 5 O 1.35898 * 119.97604 * 179.97438 * 4 3 2 6 6 C 1.42903 * 117.00433 * 185.44569 * 5 4 3 7 7 H 1.08999 * 110.43198 * 33.70718 * 6 5 4 8 8 C 1.54634 * 110.48435 * 156.24411 * 6 5 4 9 9 C 1.54484 * 101.76311 * 93.88399 * 8 6 5 10 10 N 1.46759 * 105.47403 * 25.41308 * 9 8 6 11 11 C 1.46498 * 124.35054 * 162.98702 * 10 9 8 12 12 C 1.34421 * 111.30247 * 342.98316 * 10 9 8 13 13 O 1.21280 * 124.94305 * 180.44544 * 12 10 9 14 14 C 1.38894 * 120.05625 * 359.97438 * 4 3 2 15 15 C 1.37940 * 120.02655 * 0.02562 * 14 4 3 16 16 C 1.39084 * 120.01569 * 179.73249 * 2 1 3 17 17 N 1.39517 * 120.02725 * 359.97438 * 16 2 1 18 18 C 1.34780 * 120.00025 * 199.70977 * 17 16 2 19 19 O 1.21778 * 119.99699 * 6.42763 * 18 17 16 20 20 C 1.41773 * 120.00078 * 186.43135 * 18 17 16 21 21 H 1.08000 * 119.99888 * 359.97438 * 20 18 17 22 22 C 1.40133 * 119.99917 * 179.97438 * 20 18 17 23 23 N 1.30632 * 120.00132 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99847 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47274 * 119.99892 * 24 22 20 27 27 H 1.48507 * 109.47171 * 239.99950 * 24 22 20 28 28 H 1.09001 * 109.47380 * 89.99967 * 1 2 3 29 29 H 1.08997 * 109.47468 * 329.99738 * 1 2 3 30 30 H 1.09000 * 109.47100 * 209.99756 * 1 2 3 31 31 H 1.07996 * 119.98979 * 0.02562 * 3 2 1 32 32 H 1.09001 * 110.96431 * 211.99597 * 8 6 5 33 33 H 1.09000 * 110.97049 * 335.76452 * 8 6 5 34 34 H 1.08995 * 110.24260 * 144.41270 * 9 8 6 35 35 H 1.08996 * 110.24199 * 266.41132 * 9 8 6 36 36 H 1.09001 * 109.47463 * 89.99519 * 11 10 9 37 37 H 1.08996 * 109.47201 * 209.99551 * 11 10 9 38 38 H 1.09004 * 109.47233 * 330.00047 * 11 10 9 39 39 H 1.07999 * 119.98385 * 179.97438 * 14 4 3 40 40 H 1.08001 * 120.01192 * 179.97438 * 15 14 4 41 41 H 0.96999 * 120.00001 * 19.70691 * 17 16 2 42 42 H 0.96993 * 120.00101 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1948 0.0000 4 6 3.5856 1.1952 -0.0005 5 8 4.2643 2.3726 -0.0011 6 6 5.6864 2.3018 -0.1224 7 1 5.9729 1.4620 -0.7554 8 6 6.2474 3.6252 -0.6925 9 6 6.6031 4.3979 0.5971 10 7 6.8384 3.3695 1.6174 11 6 7.5383 3.6052 2.8826 12 6 6.3290 2.1836 1.2420 13 8 6.3769 1.1669 1.9014 14 6 4.2816 -0.0067 -0.0005 15 6 3.5940 -1.2025 -0.0005 16 6 2.2027 -1.2043 0.0056 17 7 1.5060 -2.4131 0.0118 18 6 2.1217 -3.5437 0.4108 19 8 3.2461 -3.4931 0.8758 20 6 1.4604 -4.7918 0.2890 21 1 0.4631 -4.8366 -0.1231 22 6 2.1008 -5.9674 0.7033 23 7 3.3072 -5.9133 1.2012 24 14 1.2297 -7.6120 0.5421 25 1 -0.1171 -7.4031 -0.0477 26 1 2.0224 -8.5079 -0.3377 27 1 1.0910 -8.2323 1.8843 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 0.8899 0.5138 30 1 -0.3633 -0.8900 0.5138 31 1 1.6572 2.1301 0.0004 32 1 7.1366 3.4439 -1.2963 33 1 5.4882 4.1550 -1.2678 34 1 7.5047 4.9912 0.4447 35 1 5.7736 5.0400 0.8929 36 1 6.8195 3.9049 3.6452 37 1 8.0402 2.6899 3.1961 38 1 8.2760 4.3963 2.7478 39 1 5.3616 -0.0051 -0.0014 40 1 4.1354 -2.1370 -0.0010 41 1 0.5786 -2.4397 -0.2710 42 1 3.7503 -6.7270 1.4884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281813040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:15 Heat of formation + Delta-G solvation = -65.716363 kcal Electronic energy + Delta-G solvation = -26408.375114 eV Core-core repulsion = 22547.346713 eV Total energy + Delta-G solvation = -3861.028401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94528 -39.45016 -38.08027 -36.63838 -36.22201 -33.30214 -32.60405 -32.22221 -31.65975 -28.76297 -27.50452 -26.97294 -26.41832 -25.76493 -22.50618 -22.27343 -20.81889 -19.93591 -19.48912 -17.88723 -17.63540 -16.85896 -16.22317 -15.97238 -15.87860 -15.61609 -15.03571 -14.51464 -14.12854 -13.93023 -13.67108 -13.65615 -13.29675 -12.96577 -12.90084 -12.85617 -12.71294 -12.59702 -12.45873 -12.32740 -11.89819 -11.78508 -11.48877 -11.31916 -11.21511 -11.15868 -10.88658 -10.63787 -10.32600 -10.21094 -9.75388 -9.10401 -8.91224 -8.71817 -8.17603 -7.56885 -6.61233 -6.34070 -4.88043 1.99830 2.18284 2.28870 2.79044 3.05364 3.13879 3.18451 3.52432 3.99430 4.07443 4.16669 4.29143 4.53466 4.60248 4.75047 4.81988 5.00523 5.07847 5.15583 5.26398 5.42327 5.47450 5.49943 5.52452 5.55346 5.66498 5.74114 5.90033 5.96468 5.99973 6.22152 6.29299 6.41859 6.72425 6.76815 6.86738 7.13348 7.19868 7.24126 7.38992 7.75171 7.91125 8.04030 8.10040 8.28405 8.81958 9.32540 10.40005 10.60732 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.003060 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.116437 B = 9148.829463 C =10142.773531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.129 4.129 3 C -0.119 4.119 4 C 0.057 3.943 5 O -0.297 6.297 6 C 0.056 3.944 7 H 0.108 0.892 8 C -0.129 4.129 9 C 0.105 3.895 10 N -0.623 5.623 11 C 0.097 3.903 12 C 0.496 3.504 13 O -0.501 6.501 14 C -0.165 4.165 15 C -0.111 4.111 16 C 0.173 3.827 17 N -0.692 5.692 18 C 0.542 3.458 19 O -0.562 6.562 20 C -0.538 4.538 21 H 0.070 0.930 22 C 0.087 3.913 23 N -0.746 5.746 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.165 0.835 41 H 0.391 0.609 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 19.965 -4.176 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.139 4.139 4 C 0.013 3.987 5 O -0.211 6.211 6 C -0.005 4.005 7 H 0.126 0.874 8 C -0.166 4.166 9 C -0.018 4.018 10 N -0.360 5.360 11 C -0.045 4.045 12 C 0.281 3.719 13 O -0.374 6.374 14 C -0.184 4.184 15 C -0.131 4.131 16 C 0.073 3.927 17 N -0.334 5.334 18 C 0.351 3.649 19 O -0.446 6.446 20 C -0.573 4.573 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.373 5.373 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.182 0.818 41 H 0.225 0.775 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.841 19.402 -3.314 20.269 hybrid contribution -0.666 -0.814 -0.033 1.052 sum 4.175 18.587 -3.347 19.342 Atomic orbital electron populations 1.20584 0.91347 1.02446 1.01602 1.19265 0.95456 0.91254 1.07387 1.19731 0.90162 0.97301 1.06668 1.18792 0.91429 0.83874 1.04647 1.86043 1.16297 1.29242 1.89525 1.22922 0.81745 1.00889 0.94946 0.87404 1.22741 1.02273 0.94554 0.97067 1.22104 1.01780 0.90837 0.87073 1.48116 1.57463 1.10731 1.19694 1.21546 0.96321 1.02498 0.84154 1.21402 0.78549 0.83108 0.88858 1.90817 1.56753 1.31231 1.58625 1.21185 0.99713 0.91782 1.05738 1.21792 0.93119 0.99477 0.98742 1.17877 0.91736 0.86003 0.97121 1.44133 1.14863 1.06386 1.68022 1.17078 0.86528 0.82580 0.78725 1.90561 1.19939 1.85395 1.48727 1.20088 1.03153 0.90704 1.43327 0.91132 1.25768 0.94346 1.00711 0.92750 1.70018 1.11111 1.29181 1.26999 0.86232 0.80225 0.81248 0.78620 1.18572 1.19929 1.19948 0.91808 0.91923 0.91652 0.86213 0.88301 0.87632 0.90088 0.90661 0.92546 0.90565 0.91052 0.85985 0.81846 0.77522 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.46 36.00 0.34 -1.17 16 2 C -0.13 -2.41 5.90 -104.40 -0.62 -3.03 16 3 C -0.12 -2.11 9.63 -39.45 -0.38 -2.49 16 4 C 0.06 1.05 6.66 -39.11 -0.26 0.79 16 5 O -0.30 -4.68 9.85 -19.42 -0.19 -4.87 16 6 C 0.06 0.73 2.78 -26.74 -0.07 0.65 16 7 H 0.11 1.41 6.28 -51.93 -0.33 1.08 16 8 C -0.13 -0.99 6.91 -25.09 -0.17 -1.16 16 9 C 0.11 0.77 7.35 -3.12 -0.02 0.75 16 10 N -0.62 -7.00 3.33 -180.30 -0.60 -7.60 16 11 C 0.10 0.87 10.96 59.85 0.66 1.53 16 12 C 0.50 7.60 7.54 -10.86 -0.08 7.52 16 13 O -0.50 -10.12 16.38 5.56 0.09 -10.03 16 14 C -0.16 -3.41 8.49 -39.45 -0.33 -3.74 16 15 C -0.11 -2.62 8.76 -39.36 -0.34 -2.97 16 16 C 0.17 3.87 6.48 -83.72 -0.54 3.33 16 17 N -0.69 -16.16 5.05 -12.40 -0.06 -16.22 16 18 C 0.54 15.31 7.40 -14.91 -0.11 15.20 16 19 O -0.56 -17.86 11.80 5.12 0.06 -17.80 16 20 C -0.54 -14.78 9.31 -37.52 -0.35 -15.13 16 21 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 22 C 0.09 2.37 5.50 -17.35 -0.10 2.27 16 23 N -0.75 -21.76 11.73 55.55 0.65 -21.11 16 24 Si 0.91 19.53 29.56 -169.99 -5.02 14.50 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.06 0.98 6.87 -51.93 -0.36 0.62 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 2.41 5.23 -52.49 -0.27 2.14 16 40 H 0.16 4.44 5.46 -52.49 -0.29 4.16 16 41 H 0.39 7.83 7.14 -40.82 -0.29 7.53 16 42 H 0.27 7.16 8.29 -40.82 -0.34 6.83 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -37.01 350.32 -7.48 -44.49 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.29 Total: 11.00 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.39 Total: 2.36 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.01 Total: -44.93 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.04 Total: -32.70 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.01 -7.48 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281813040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.226 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds