Wall clock time and date at job start Tue Mar 31 2020 13:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37985 * 120.01163 * 2 1 4 4 C 1.38848 * 120.02804 * 180.02562 * 3 2 1 5 5 O 1.35898 * 119.97604 * 179.97438 * 4 3 2 6 6 C 1.42903 * 117.00433 * 185.44569 * 5 4 3 7 7 H 1.08999 * 110.43198 * 33.70718 * 6 5 4 8 8 C 1.54634 * 110.48435 * 156.24411 * 6 5 4 9 9 C 1.54484 * 101.76311 * 93.88399 * 8 6 5 10 10 N 1.46759 * 105.47403 * 25.41308 * 9 8 6 11 11 C 1.46498 * 124.35054 * 162.98702 * 10 9 8 12 12 C 1.34421 * 111.30247 * 342.98316 * 10 9 8 13 13 O 1.21280 * 124.94305 * 180.44544 * 12 10 9 14 14 C 1.38894 * 120.05625 * 359.97438 * 4 3 2 15 15 C 1.37940 * 120.02655 * 0.02562 * 14 4 3 16 16 C 1.39084 * 120.01569 * 179.73249 * 2 1 3 17 17 N 1.39517 * 120.02725 * 359.97438 * 16 2 1 18 18 C 1.34780 * 120.00025 * 199.70977 * 17 16 2 19 19 O 1.21778 * 119.99699 * 6.42763 * 18 17 16 20 20 C 1.41773 * 120.00078 * 186.43135 * 18 17 16 21 21 H 1.08000 * 119.99888 * 359.97438 * 20 18 17 22 22 C 1.40133 * 119.99917 * 179.97438 * 20 18 17 23 23 N 1.30632 * 120.00132 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 119.99847 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47231 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47274 * 119.99892 * 24 22 20 27 27 H 1.48507 * 109.47171 * 239.99950 * 24 22 20 28 28 H 1.09001 * 109.47380 * 89.99967 * 1 2 3 29 29 H 1.08997 * 109.47468 * 329.99738 * 1 2 3 30 30 H 1.09000 * 109.47100 * 209.99756 * 1 2 3 31 31 H 1.07996 * 119.98979 * 0.02562 * 3 2 1 32 32 H 1.09001 * 110.96431 * 211.99597 * 8 6 5 33 33 H 1.09000 * 110.97049 * 335.76452 * 8 6 5 34 34 H 1.08995 * 110.24260 * 144.41270 * 9 8 6 35 35 H 1.08996 * 110.24199 * 266.41132 * 9 8 6 36 36 H 1.09001 * 109.47463 * 89.99519 * 11 10 9 37 37 H 1.08996 * 109.47201 * 209.99551 * 11 10 9 38 38 H 1.09004 * 109.47233 * 330.00047 * 11 10 9 39 39 H 1.07999 * 119.98385 * 179.97438 * 14 4 3 40 40 H 1.08001 * 120.01192 * 179.97438 * 15 14 4 41 41 H 0.96999 * 120.00001 * 19.70691 * 17 16 2 42 42 H 0.96993 * 120.00101 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1948 0.0000 4 6 3.5856 1.1952 -0.0005 5 8 4.2643 2.3726 -0.0011 6 6 5.6864 2.3018 -0.1224 7 1 5.9729 1.4620 -0.7554 8 6 6.2474 3.6252 -0.6925 9 6 6.6031 4.3979 0.5971 10 7 6.8384 3.3695 1.6174 11 6 7.5383 3.6052 2.8826 12 6 6.3290 2.1836 1.2420 13 8 6.3769 1.1669 1.9014 14 6 4.2816 -0.0067 -0.0005 15 6 3.5940 -1.2025 -0.0005 16 6 2.2027 -1.2043 0.0056 17 7 1.5060 -2.4131 0.0118 18 6 2.1217 -3.5437 0.4108 19 8 3.2461 -3.4931 0.8758 20 6 1.4604 -4.7918 0.2890 21 1 0.4631 -4.8366 -0.1231 22 6 2.1008 -5.9674 0.7033 23 7 3.3072 -5.9133 1.2012 24 14 1.2297 -7.6120 0.5421 25 1 -0.1171 -7.4031 -0.0477 26 1 2.0224 -8.5079 -0.3377 27 1 1.0910 -8.2323 1.8843 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 0.8899 0.5138 30 1 -0.3633 -0.8900 0.5138 31 1 1.6572 2.1301 0.0004 32 1 7.1366 3.4439 -1.2963 33 1 5.4882 4.1550 -1.2678 34 1 7.5047 4.9912 0.4447 35 1 5.7736 5.0400 0.8929 36 1 6.8195 3.9049 3.6452 37 1 8.0402 2.6899 3.1961 38 1 8.2760 4.3963 2.7478 39 1 5.3616 -0.0051 -0.0014 40 1 4.1354 -2.1370 -0.0010 41 1 0.5786 -2.4397 -0.2710 42 1 3.7503 -6.7270 1.4884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281813040.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:14 Heat of formation + Delta-G solvation = -93.265885 kcal Electronic energy + Delta-G solvation = -26409.569751 eV Core-core repulsion = 22547.346713 eV Total energy + Delta-G solvation = -3862.223038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08571 -41.03070 -39.66547 -38.15665 -37.50386 -35.13636 -34.54053 -33.28537 -33.19112 -30.36835 -28.86918 -28.17160 -27.45543 -27.36912 -24.07342 -23.42741 -22.14794 -21.67821 -20.69943 -19.51388 -19.14578 -18.07870 -17.82418 -17.65820 -17.07084 -16.87764 -16.49577 -15.81577 -15.67284 -15.30783 -15.03253 -14.84074 -14.79336 -14.56564 -14.35718 -14.08480 -13.94350 -13.85355 -13.58899 -13.35610 -13.21698 -13.18198 -12.89019 -12.74699 -12.68483 -12.50936 -12.37561 -12.27865 -11.98712 -11.70482 -11.19359 -10.96870 -10.48921 -9.85052 -9.81286 -9.59508 -8.40075 -8.33136 -7.02958 0.41324 0.55673 1.10747 1.37787 1.38010 1.57227 1.91855 2.19392 2.32900 2.36251 2.83990 2.99102 3.18953 3.38140 3.64182 3.75244 3.96657 3.98501 4.11840 4.18843 4.30239 4.32330 4.42551 4.55542 4.56791 4.66878 4.79585 4.80384 4.87903 4.94466 4.99875 5.06590 5.16506 5.20649 5.30791 5.47715 5.52502 5.59434 5.69714 5.87622 5.92077 6.17914 6.22695 6.50289 6.71298 6.95486 7.40133 8.36686 8.55023 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.003060 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.116437 B = 9148.829463 C =10142.773531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.111 4.111 3 C -0.116 4.116 4 C 0.071 3.929 5 O -0.289 6.289 6 C 0.043 3.957 7 H 0.098 0.902 8 C -0.113 4.113 9 C 0.099 3.901 10 N -0.615 5.615 11 C 0.089 3.911 12 C 0.478 3.522 13 O -0.570 6.570 14 C -0.176 4.176 15 C -0.143 4.143 16 C 0.136 3.864 17 N -0.684 5.684 18 C 0.524 3.476 19 O -0.612 6.612 20 C -0.562 4.562 21 H 0.094 0.906 22 C 0.028 3.972 23 N -0.803 5.803 24 Si 1.005 2.995 25 H -0.242 1.242 26 H -0.267 1.267 27 H -0.268 1.268 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.163 0.837 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.407 0.593 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 23.254 -5.451 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.026 3.974 5 O -0.203 6.203 6 C -0.017 4.017 7 H 0.116 0.884 8 C -0.150 4.150 9 C -0.022 4.022 10 N -0.349 5.349 11 C -0.052 4.052 12 C 0.264 3.736 13 O -0.449 6.449 14 C -0.195 4.195 15 C -0.164 4.164 16 C 0.037 3.963 17 N -0.328 5.328 18 C 0.334 3.666 19 O -0.500 6.500 20 C -0.597 4.597 21 H 0.112 0.888 22 C -0.189 4.189 23 N -0.431 5.431 24 Si 0.824 3.176 25 H -0.165 1.165 26 H -0.192 1.192 27 H -0.193 1.193 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.180 0.820 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.243 0.757 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.894 22.819 -4.626 23.463 hybrid contribution 0.059 -1.560 0.368 1.604 sum 2.953 21.260 -4.258 21.882 Atomic orbital electron populations 1.20711 0.87881 1.03606 1.03657 1.19731 0.97831 0.89798 1.04153 1.20222 0.89787 0.98540 1.04879 1.18934 0.92272 0.83879 1.02362 1.86052 1.17927 1.27317 1.88983 1.23303 0.80098 1.04183 0.94162 0.88400 1.22900 1.03479 0.91023 0.97621 1.22504 1.04329 0.89950 0.85411 1.48365 1.55509 1.10272 1.20781 1.21750 0.97100 1.02840 0.83481 1.21904 0.78752 0.83469 0.89498 1.90779 1.59676 1.33857 1.60636 1.21099 0.99639 0.92048 1.06722 1.21432 0.94328 0.98655 1.01991 1.18087 0.91350 0.87041 0.99806 1.43646 1.15354 1.05839 1.67930 1.17522 0.86192 0.84328 0.78571 1.90549 1.22007 1.86567 1.50870 1.20625 1.04230 0.91059 1.43776 0.88822 1.27111 0.94876 1.05591 0.91366 1.70194 1.13533 1.30948 1.28446 0.84865 0.79331 0.74536 0.78911 1.16501 1.19179 1.19251 0.89128 0.88926 0.92314 0.81969 0.85611 0.85500 0.85941 0.89418 0.92324 0.92796 0.86700 0.86503 0.86751 0.75719 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.66 9.46 71.23 0.67 -1.99 16 2 C -0.11 -4.03 5.90 -19.72 -0.12 -4.14 16 3 C -0.12 -3.82 9.63 22.36 0.22 -3.61 16 4 C 0.07 2.61 6.66 22.57 0.15 2.76 16 5 O -0.29 -8.69 9.85 -92.40 -0.91 -9.60 16 6 C 0.04 1.09 2.78 30.59 0.09 1.18 16 7 H 0.10 2.67 6.28 -2.39 -0.01 2.66 16 8 C -0.11 -1.32 6.91 31.65 0.22 -1.10 16 9 C 0.10 1.04 7.35 86.83 0.64 1.67 16 10 N -0.61 -12.79 3.33 -842.92 -2.81 -15.60 16 11 C 0.09 1.49 10.96 127.77 1.40 2.89 16 12 C 0.48 14.97 7.54 87.90 0.66 15.63 16 13 O -0.57 -24.92 16.38 -3.03 -0.05 -24.97 16 14 C -0.18 -7.80 8.49 22.36 0.19 -7.61 16 15 C -0.14 -7.41 8.76 22.41 0.20 -7.21 16 16 C 0.14 6.36 6.48 38.34 0.25 6.61 16 17 N -0.68 -33.42 5.05 -311.31 -1.57 -35.00 16 18 C 0.52 31.55 7.40 85.11 0.63 32.18 16 19 O -0.61 -42.41 11.80 -4.60 -0.05 -42.46 16 20 C -0.56 -31.96 9.31 23.60 0.22 -31.74 16 21 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 22 C 0.03 1.59 5.50 85.33 0.47 2.05 16 23 N -0.80 -49.56 11.73 21.85 0.26 -49.30 16 24 Si 1.01 40.57 29.56 68.60 2.03 42.60 16 25 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 26 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 27 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 30 H 0.06 1.64 6.87 -2.39 -0.02 1.62 16 31 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 32 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.13 1.03 8.10 -2.39 -0.02 1.01 16 34 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 38 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.12 5.16 5.23 -2.91 -0.02 5.14 16 40 H 0.11 7.06 5.46 -2.91 -0.02 7.05 16 41 H 0.41 16.53 7.14 -92.71 -0.66 15.87 16 42 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -92.05 350.32 3.18 -88.88 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: 0.41 Total: 37.87 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.88 Total: 7.57 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -4.13 Total: -99.89 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: -1.01 Total: -77.03 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -92.05 3.18 -88.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281813040.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.390 kcal (2) G-P(sol) polarization free energy of solvation -92.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds