Wall clock time and date at job start Tue Mar 31 2020 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21298 * 120.00092 * 2 1 4 4 C 1.46857 * 120.00374 * 179.97438 * 2 1 3 5 5 C 1.40079 * 120.09231 * 355.64644 * 4 2 1 6 6 C 1.36587 * 119.90038 * 180.02562 * 5 4 2 7 7 C 1.39278 * 120.09516 * 359.97424 * 6 5 4 8 8 N 1.39154 * 119.90468 * 180.02562 * 7 6 5 9 9 C 1.34780 * 120.00319 * 318.43968 * 8 7 6 10 10 O 1.21359 * 119.99530 * 353.91522 * 9 8 7 11 11 C 1.49358 * 120.00309 * 173.91273 * 9 8 7 12 12 O 1.21359 * 120.00266 * 357.51799 * 11 9 8 13 13 N 1.34781 * 120.00394 * 177.51616 * 11 9 8 14 14 C 1.46502 * 119.99438 * 0.72818 * 13 11 9 15 15 C 1.46498 * 120.00293 * 180.72704 * 13 11 9 16 16 C 1.50700 * 109.46872 * 90.00193 * 15 13 11 17 17 H 1.08000 * 120.00286 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99589 * 179.97438 * 16 15 13 19 19 N 1.31517 * 119.99960 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00118 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46967 * 90.00319 * 20 18 16 22 22 H 1.48498 * 109.47111 * 209.99978 * 20 18 16 23 23 H 1.48498 * 109.47312 * 329.99930 * 20 18 16 24 24 C 1.39238 * 120.19658 * 0.02952 * 7 6 5 25 25 C 1.36625 * 120.09268 * 359.71425 * 24 7 6 26 26 C 1.50697 * 120.04761 * 180.30460 * 25 24 7 27 27 H 1.08997 * 109.46776 * 174.62596 * 1 2 3 28 28 H 1.08991 * 109.47292 * 54.62191 * 1 2 3 29 29 H 1.09007 * 109.47007 * 294.62156 * 1 2 3 30 30 H 1.07991 * 120.04714 * 0.02662 * 5 4 2 31 31 H 1.07995 * 119.94784 * 180.02562 * 6 5 4 32 32 H 0.96999 * 120.00193 * 138.42692 * 8 7 6 33 33 H 1.09001 * 109.46863 * 83.61960 * 14 13 11 34 34 H 1.08995 * 109.46740 * 203.61804 * 14 13 11 35 35 H 1.08997 * 109.47435 * 323.61762 * 14 13 11 36 36 H 1.09002 * 109.47069 * 210.00200 * 15 13 11 37 37 H 1.09000 * 109.46910 * 330.00469 * 15 13 11 38 38 H 0.96998 * 120.00255 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.95461 * 179.97438 * 24 7 6 40 40 H 1.09004 * 109.46776 * 263.76252 * 26 25 24 41 41 H 1.08996 * 109.47575 * 23.76724 * 26 25 24 42 42 H 1.09006 * 109.47631 * 143.77101 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2414 -1.2718 0.0006 5 6 1.5460 -2.4843 0.0931 6 6 2.2330 -3.6648 0.0938 7 6 3.6228 -3.6641 0.0022 8 7 4.3187 -4.8692 0.0027 9 6 3.9525 -5.8585 0.8415 10 8 3.0894 -5.6617 1.6718 11 6 4.6087 -7.1971 0.7493 12 8 5.4394 -7.4077 -0.1099 13 7 4.2784 -8.1711 1.6204 14 6 3.2640 -7.9219 2.6476 15 6 4.9336 -9.4789 1.5400 16 6 6.1699 -9.4752 2.4017 17 1 6.4407 -8.5873 2.9537 18 6 6.9553 -10.6053 2.4853 19 7 8.0339 -10.6023 3.2377 20 14 6.4864 -12.1412 1.5311 21 1 7.1198 -12.1025 0.1885 22 1 6.9566 -13.3431 2.2657 23 1 5.0102 -12.1992 1.3806 24 6 4.3180 -2.4612 -0.0899 25 6 3.6384 -1.2760 -0.0966 26 6 4.3914 0.0250 -0.2032 27 1 -0.3633 -1.0231 -0.0962 28 1 -0.3633 0.5949 -0.8378 29 1 -0.3633 0.4282 0.9343 30 1 0.4684 -2.4856 0.1638 31 1 1.6977 -4.6000 0.1647 32 1 5.0672 -4.9973 -0.6007 33 1 2.2719 -8.0786 2.2241 34 1 3.4155 -8.6072 3.4815 35 1 3.3499 -6.8945 3.0014 36 1 4.2485 -10.2507 1.8908 37 1 5.2120 -9.6828 0.5060 38 1 8.5867 -11.3972 3.2963 39 1 5.3957 -2.4653 -0.1604 40 1 4.5439 0.4392 0.7935 41 1 5.3579 -0.1522 -0.6750 42 1 3.8169 0.7291 -0.8052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283375917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:26 Heat of formation + Delta-G solvation = -78.236131 kcal Electronic energy + Delta-G solvation = -25809.018577 eV Core-core repulsion = 21947.447278 eV Total energy + Delta-G solvation = -3861.571299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31718 -41.21459 -40.01799 -38.94364 -37.24838 -35.94297 -34.65936 -33.94569 -32.11489 -30.73751 -30.08446 -27.96312 -27.82425 -26.48500 -24.63702 -23.66434 -22.37870 -21.05831 -20.85267 -19.20142 -19.06183 -18.40426 -17.83805 -17.43113 -17.24923 -16.90811 -16.46275 -16.17402 -16.06421 -15.55497 -15.31427 -15.12893 -14.88405 -14.45276 -14.44022 -14.18494 -14.02438 -13.84746 -13.71956 -13.42325 -13.27541 -13.20278 -13.05935 -12.95064 -12.81175 -12.51029 -12.32008 -12.20980 -12.01563 -11.76394 -11.40675 -10.84534 -10.56301 -10.41523 -9.93057 -9.65030 -9.38733 -8.35366 -6.42914 -0.57531 0.30263 0.33612 1.16650 1.36444 1.39112 1.40371 1.48135 2.06729 2.30982 2.47054 2.69682 2.98594 3.15533 3.19859 3.67876 3.75480 4.08995 4.15071 4.22058 4.38275 4.39733 4.60296 4.61862 4.66837 4.69574 4.70781 4.77329 4.80612 4.84140 4.97174 5.04974 5.09044 5.18842 5.24274 5.29065 5.35148 5.39833 5.51343 5.74839 5.86511 6.14826 6.28575 6.57207 6.59374 6.59860 6.88453 7.21494 8.81298 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.002490 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.486727 B =11240.978260 C =11641.501344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.395 3.605 3 O -0.491 6.491 4 C -0.203 4.203 5 C -0.036 4.036 6 C -0.147 4.147 7 C 0.171 3.829 8 N -0.643 5.643 9 C 0.523 3.477 10 O -0.498 6.498 11 C 0.490 3.510 12 O -0.553 6.553 13 N -0.567 5.567 14 C 0.071 3.929 15 C 0.219 3.781 16 C -0.543 4.543 17 H 0.028 0.972 18 C 0.013 3.987 19 N -0.943 5.943 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.234 1.234 24 C -0.158 4.158 25 C -0.016 4.016 26 C -0.119 4.119 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.134 0.866 32 H 0.430 0.570 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.270 0.730 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 17.816 -8.645 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.277 3.723 3 O -0.371 6.371 4 C -0.205 4.205 5 C -0.054 4.054 6 C -0.167 4.167 7 C 0.077 3.923 8 N -0.291 5.291 9 C 0.306 3.694 10 O -0.373 6.373 11 C 0.272 3.728 12 O -0.433 6.433 13 N -0.298 5.298 14 C -0.070 4.070 15 C 0.098 3.902 16 C -0.582 4.582 17 H 0.046 0.954 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.772 3.228 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.157 1.157 24 C -0.178 4.178 25 C -0.017 4.017 26 C -0.175 4.175 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.191 0.809 31 H 0.152 0.848 32 H 0.269 0.731 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.162 0.838 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.805 18.179 -8.405 26.798 hybrid contribution 1.177 -1.057 -0.197 1.594 sum -16.628 17.122 -8.602 25.370 Atomic orbital electron populations 1.22279 0.90745 1.06537 1.05825 1.22821 0.93223 0.86636 0.69611 1.90496 1.72420 1.35493 1.38650 1.20636 0.93905 0.95932 1.09990 1.21393 1.01769 0.89441 0.92816 1.20947 0.92019 1.00220 1.03503 1.18167 0.91934 0.84549 0.97687 1.43083 1.34976 1.11940 1.39055 1.20079 0.82992 0.85210 0.81107 1.90681 1.31072 1.82114 1.33385 1.20107 0.83594 0.85854 0.83220 1.90720 1.33907 1.81819 1.36805 1.47871 1.38667 1.12889 1.30335 1.22373 0.90027 1.04072 0.90526 1.19640 0.92542 0.80735 0.97291 1.21458 1.09147 0.99262 1.28292 0.95352 1.25866 0.94211 1.02562 0.95888 1.70046 1.16332 1.30974 1.40894 0.85691 0.80885 0.77756 0.78508 1.19679 1.20240 1.15732 1.20802 1.01085 0.90005 1.05899 1.19974 0.93230 0.95620 0.92908 1.21086 0.99781 0.93467 1.03184 0.87727 0.87902 0.87639 0.80902 0.84778 0.73063 0.90181 0.90982 0.88865 0.92042 0.94716 0.92105 0.83757 0.90900 0.90699 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 10.17 71.24 0.72 -0.79 16 2 C 0.39 6.45 7.16 27.94 0.20 6.65 16 3 O -0.49 -11.02 14.04 -3.09 -0.04 -11.06 16 4 C -0.20 -3.62 5.87 -20.14 -0.12 -3.74 16 5 C -0.04 -0.55 9.36 22.33 0.21 -0.34 16 6 C -0.15 -2.97 8.59 22.13 0.19 -2.78 16 7 C 0.17 3.89 6.10 38.47 0.23 4.13 16 8 N -0.64 -16.57 5.27 -304.78 -1.61 -18.17 16 9 C 0.52 16.51 7.45 87.24 0.65 17.16 16 10 O -0.50 -15.67 11.43 -3.27 -0.04 -15.71 16 11 C 0.49 19.34 7.74 87.24 0.67 20.02 16 12 O -0.55 -24.79 16.07 -3.27 -0.05 -24.84 16 13 N -0.57 -23.06 2.86 -852.84 -2.44 -25.49 16 14 C 0.07 2.31 9.47 127.77 1.21 3.52 16 15 C 0.22 10.21 4.20 85.63 0.36 10.57 16 16 C -0.54 -31.07 9.94 25.60 0.25 -30.82 16 17 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 18 C 0.01 0.76 5.47 84.65 0.46 1.23 16 19 N -0.94 -58.37 13.96 21.45 0.30 -58.07 16 20 Si 0.95 42.43 27.47 68.60 1.88 44.31 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 24 C -0.16 -3.25 9.53 22.13 0.21 -3.04 16 25 C -0.02 -0.33 5.89 -19.81 -0.12 -0.44 16 26 C -0.12 -2.19 8.75 71.24 0.62 -1.57 16 27 H 0.10 0.34 5.67 -2.39 -0.01 0.33 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.17 1.28 6.00 -2.92 -0.02 1.27 16 31 H 0.13 2.76 7.03 -2.91 -0.02 2.74 16 32 H 0.43 10.21 8.32 -92.71 -0.77 9.44 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.33 8.02 -2.39 -0.02 2.31 16 35 H 0.09 3.03 5.48 -2.39 -0.01 3.02 16 36 H 0.06 2.59 7.13 -2.39 -0.02 2.57 16 37 H 0.03 1.67 6.84 -2.39 -0.02 1.66 16 38 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 39 H 0.14 2.57 8.05 -2.91 -0.02 2.55 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.09 1.73 5.80 -2.38 -0.01 1.72 16 Total: -1.00 -74.60 352.81 4.03 -70.57 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.25 Total: 18.71 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 5.77 Total: 19.76 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.74 Total: -101.74 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.13 Total: -51.61 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.31 kcal Total: -74.60 4.03 -70.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283375917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.662 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds