Wall clock time and date at job start Tue Mar 31 2020 13:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35149 * 125.47885 * 2 1 4 4 C 1.40318 * 107.20309 * 179.72259 * 3 2 1 5 5 C 1.37951 * 106.52782 * 0.40595 * 4 3 2 6 6 C 1.41607 * 126.10552 * 179.84713 * 5 4 3 7 7 C 1.35620 * 120.00121 * 179.71906 * 6 5 4 8 8 C 1.41548 * 120.00175 * 180.02562 * 7 6 5 9 9 O 1.21781 * 119.99924 * 355.00935 * 8 7 6 10 10 N 1.34784 * 120.00231 * 175.01866 * 8 7 6 11 11 C 1.46966 * 120.59447 * 185.26422 * 10 8 7 12 12 C 1.53367 * 108.63177 * 235.20390 * 11 10 8 13 13 N 1.46964 * 108.63613 * 310.57334 * 12 11 10 14 14 C 1.34774 * 120.59450 * 235.20641 * 13 12 11 15 15 O 1.21690 * 120.00328 * 5.21864 * 14 13 12 16 16 C 1.46375 * 119.99952 * 185.22225 * 14 13 12 17 17 H 1.07994 * 120.00111 * 354.97743 * 16 14 13 18 18 C 1.40053 * 119.99940 * 174.98247 * 16 14 13 19 19 N 1.30669 * 119.99924 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99701 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47081 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47312 * 299.99781 * 20 18 16 23 23 H 1.48500 * 109.47347 * 60.00232 * 20 18 16 24 24 C 1.46958 * 118.81054 * 55.48498 * 13 12 11 25 25 C 1.46958 * 120.59086 * 5.24369 * 10 8 7 26 26 O 1.34012 * 125.48300 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46606 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47199 * 299.99778 * 1 2 3 29 29 H 1.08999 * 109.46870 * 59.99954 * 1 2 3 30 30 H 1.08008 * 126.40114 * 359.97438 * 3 2 1 31 31 H 1.08001 * 126.74102 * 180.28451 * 4 3 2 32 32 H 1.08000 * 120.00123 * 359.72939 * 6 5 4 33 33 H 1.08006 * 120.00199 * 0.02562 * 7 6 5 34 34 H 1.08997 * 109.60626 * 115.45674 * 11 10 8 35 35 H 1.08998 * 109.60430 * 354.95196 * 11 10 8 36 36 H 1.09008 * 109.60405 * 190.83472 * 12 11 10 37 37 H 1.08997 * 109.61382 * 70.32389 * 12 11 10 38 38 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.61170 * 64.26142 * 24 13 12 40 40 H 1.09003 * 109.61151 * 184.77730 * 24 13 12 41 41 H 1.09010 * 109.60830 * 244.54033 * 25 10 8 42 42 H 1.09001 * 109.61575 * 5.04949 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6239 0.6605 0.0065 5 6 3.5818 -0.7183 0.0008 6 6 4.7000 -1.5873 0.0013 7 6 4.5147 -2.9307 0.0010 8 6 5.6324 -3.7993 0.0020 9 8 6.7579 -3.3434 -0.0887 10 7 5.4509 -5.1311 0.1031 11 6 6.6027 -6.0361 0.2213 12 6 6.5189 -7.0843 -0.8951 13 7 5.1655 -7.6574 -0.9006 14 6 4.9841 -8.9890 -0.7995 15 8 5.9376 -9.7202 -0.6073 16 6 3.6400 -9.5557 -0.9209 17 1 2.7846 -8.9026 -1.0102 18 6 3.4632 -10.9451 -0.9212 19 7 4.4983 -11.7354 -0.8136 20 14 1.7479 -11.6683 -1.0755 21 1 1.8316 -13.1507 -1.0506 22 1 0.9096 -11.2003 0.0575 23 1 1.1387 -11.2289 -2.3566 24 6 4.0140 -6.7528 -1.0244 25 6 4.0976 -5.7040 0.0975 26 8 2.2850 -1.0912 0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9556 2.1271 -0.0004 31 1 4.5087 1.2798 0.0125 32 1 5.7003 -1.1801 0.0020 33 1 3.5144 -3.3380 0.0000 34 1 6.5800 -6.5323 1.1915 35 1 7.5269 -5.4670 0.1202 36 1 7.2492 -7.8727 -0.7122 37 1 6.7200 -6.6118 -1.8565 38 1 4.3758 -12.6976 -0.8135 39 1 4.0408 -6.2571 -1.9949 40 1 3.0895 -7.3220 -0.9270 41 1 3.8965 -6.1766 1.0591 42 1 3.3672 -4.9157 -0.0852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288008403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:41 Heat of formation + Delta-G solvation = -22.058191 kcal Electronic energy + Delta-G solvation = -25844.606866 eV Core-core repulsion = 21985.471625 eV Total energy + Delta-G solvation = -3859.135241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.86895 -40.12718 -38.02273 -35.88228 -34.54188 -33.57524 -33.08366 -32.49386 -31.71097 -30.82594 -27.86331 -27.02912 -25.87106 -23.73180 -22.97421 -22.17368 -21.69995 -20.48741 -19.44679 -18.30672 -17.78841 -16.65657 -16.56737 -16.08257 -15.91530 -15.53943 -15.06165 -14.74762 -14.49776 -14.24545 -14.08493 -13.96835 -13.54796 -13.46719 -13.27891 -13.01017 -12.84297 -12.76671 -12.33545 -12.19640 -11.81946 -11.65353 -11.38471 -11.17491 -11.01610 -10.95298 -10.80755 -10.74271 -10.29096 -10.10958 -10.08605 -9.73020 -8.93412 -8.65071 -8.08845 -7.66879 -7.25224 -6.26315 -4.72452 0.24927 1.81470 2.45627 2.53787 3.10842 3.15486 3.17410 3.19684 3.45204 4.02788 4.32161 4.43287 4.49804 4.50265 4.61810 4.83473 4.89358 5.03436 5.04267 5.25747 5.30776 5.32500 5.40430 5.50000 5.53236 5.58263 5.64630 5.79511 5.81656 5.94558 5.96697 6.04785 6.11666 6.20140 6.28078 6.37187 6.53034 6.75383 6.80737 7.37955 7.48523 7.57694 8.03248 8.24672 8.28567 8.94842 9.33585 10.49881 10.68276 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002847 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.227037 B = 9834.234331 C =11491.294194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.006 3.994 3 C -0.218 4.218 4 C -0.163 4.163 5 C -0.007 4.007 6 C 0.002 3.998 7 C -0.201 4.201 8 C 0.547 3.453 9 O -0.557 6.557 10 N -0.598 5.598 11 C 0.099 3.901 12 C 0.107 3.893 13 N -0.643 5.643 14 C 0.559 3.441 15 O -0.575 6.575 16 C -0.545 4.545 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.109 3.891 25 C 0.086 3.914 26 O -0.163 6.163 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.270 0.730 39 H 0.048 0.952 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 23.153 1.960 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C -0.237 4.237 4 C -0.182 4.182 5 C -0.056 4.056 6 C -0.018 4.018 7 C -0.221 4.221 8 C 0.339 3.661 9 O -0.439 6.439 10 N -0.330 5.330 11 C -0.025 4.025 12 C -0.017 4.017 13 N -0.382 5.382 14 C 0.365 3.635 15 O -0.458 6.458 16 C -0.582 4.582 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.395 5.395 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.192 1.192 23 H -0.192 1.192 24 C -0.016 4.016 25 C -0.037 4.037 26 O -0.059 6.059 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.363 22.400 2.032 23.667 hybrid contribution -0.944 -0.140 -0.098 0.959 sum -8.307 22.260 1.934 23.838 Atomic orbital electron populations 1.20402 0.84820 1.04516 1.03791 1.22745 0.94271 0.84045 1.03564 1.21497 0.92705 0.99555 1.09966 1.22330 0.98466 0.93165 1.04278 1.19842 0.82006 0.93525 1.10252 1.20643 0.95417 0.92158 0.93591 1.22283 0.99960 0.94217 1.05644 1.16963 0.89334 0.82387 0.77435 1.90797 1.25519 1.76120 1.51490 1.48015 1.08236 1.05673 1.71098 1.22097 0.89044 0.91337 0.99975 1.21513 0.88422 0.95623 0.96183 1.48191 1.03327 1.07065 1.79619 1.18280 0.90632 0.78227 0.76323 1.90599 1.43589 1.57625 1.53965 1.20911 0.91674 0.91593 1.53998 0.90929 1.25731 0.97787 0.97140 0.92594 1.69996 1.30512 1.04228 1.34751 0.86436 0.82764 0.78108 0.79495 1.20530 1.19196 1.19230 1.21897 0.92776 0.91280 0.95679 1.22504 0.82722 0.97293 1.01227 1.84062 1.16343 1.34771 1.70728 0.90195 0.89377 0.89344 0.83038 0.82639 0.82289 0.84780 0.91216 0.88847 0.88542 0.93463 0.91925 0.93373 0.87570 0.90654 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 36.01 0.37 -0.01 16 2 C 0.01 0.05 7.30 -35.40 -0.26 -0.21 16 3 C -0.22 -1.78 10.76 -39.90 -0.43 -2.21 16 4 C -0.16 -1.48 10.90 -38.90 -0.42 -1.91 16 5 C -0.01 -0.08 6.84 -38.40 -0.26 -0.34 16 6 C 0.00 0.02 9.39 -39.23 -0.37 -0.35 16 7 C -0.20 -2.55 8.80 -39.26 -0.35 -2.90 16 8 C 0.55 8.61 7.45 -14.99 -0.11 8.50 16 9 O -0.56 -10.21 15.53 5.12 0.08 -10.13 16 10 N -0.60 -9.61 2.95 -175.64 -0.52 -10.13 16 11 C 0.10 1.71 6.60 -3.60 -0.02 1.68 16 12 C 0.11 2.14 6.60 -3.60 -0.02 2.12 16 13 N -0.64 -14.30 2.94 -173.88 -0.51 -14.82 16 14 C 0.56 15.49 7.62 -12.99 -0.10 15.39 16 15 O -0.58 -18.27 14.45 5.20 0.08 -18.19 16 16 C -0.55 -14.70 8.87 -35.63 -0.32 -15.02 16 17 H 0.07 1.74 5.66 -52.49 -0.30 1.45 16 18 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 19 N -0.77 -22.49 11.84 55.55 0.66 -21.83 16 20 Si 0.91 19.41 29.56 -169.99 -5.02 14.38 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C 0.11 1.92 6.51 -3.37 -0.02 1.90 16 25 C 0.09 1.26 6.48 -3.37 -0.02 1.24 16 26 O -0.16 -1.79 10.18 4.70 0.05 -1.74 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.16 1.73 7.47 -52.49 -0.39 1.34 16 33 H 0.13 1.52 5.43 -52.48 -0.28 1.24 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.57 6.99 -51.93 -0.36 1.20 16 36 H 0.10 2.10 6.99 -51.92 -0.36 1.74 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.89 5.34 -51.93 -0.28 1.61 16 41 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 42 H 0.09 1.00 5.33 -51.93 -0.28 0.72 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -35.95 353.40 -7.49 -43.44 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.19 Total: 3.53 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -2.43 Total: 10.16 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.37 Total: -46.78 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: 0.20 Total: -30.06 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.95 -7.49 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288008403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.378 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds