Wall clock time and date at job start Tue Mar 31 2020 13:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35149 * 125.47885 * 2 1 4 4 C 1.40318 * 107.20309 * 179.72259 * 3 2 1 5 5 C 1.37951 * 106.52782 * 0.40595 * 4 3 2 6 6 C 1.41607 * 126.10552 * 179.84713 * 5 4 3 7 7 C 1.35620 * 120.00121 * 179.71906 * 6 5 4 8 8 C 1.41548 * 120.00175 * 180.02562 * 7 6 5 9 9 O 1.21781 * 119.99924 * 355.00935 * 8 7 6 10 10 N 1.34784 * 120.00231 * 175.01866 * 8 7 6 11 11 C 1.46966 * 120.59447 * 185.26422 * 10 8 7 12 12 C 1.53367 * 108.63177 * 235.20390 * 11 10 8 13 13 N 1.46964 * 108.63613 * 310.57334 * 12 11 10 14 14 C 1.34774 * 120.59450 * 235.20641 * 13 12 11 15 15 O 1.21690 * 120.00328 * 5.21864 * 14 13 12 16 16 C 1.46375 * 119.99952 * 185.22225 * 14 13 12 17 17 H 1.07994 * 120.00111 * 354.97743 * 16 14 13 18 18 C 1.40053 * 119.99940 * 174.98247 * 16 14 13 19 19 N 1.30669 * 119.99924 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99701 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47081 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47312 * 299.99781 * 20 18 16 23 23 H 1.48500 * 109.47347 * 60.00232 * 20 18 16 24 24 C 1.46958 * 118.81054 * 55.48498 * 13 12 11 25 25 C 1.46958 * 120.59086 * 5.24369 * 10 8 7 26 26 O 1.34012 * 125.48300 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46606 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47199 * 299.99778 * 1 2 3 29 29 H 1.08999 * 109.46870 * 59.99954 * 1 2 3 30 30 H 1.08008 * 126.40114 * 359.97438 * 3 2 1 31 31 H 1.08001 * 126.74102 * 180.28451 * 4 3 2 32 32 H 1.08000 * 120.00123 * 359.72939 * 6 5 4 33 33 H 1.08006 * 120.00199 * 0.02562 * 7 6 5 34 34 H 1.08997 * 109.60626 * 115.45674 * 11 10 8 35 35 H 1.08998 * 109.60430 * 354.95196 * 11 10 8 36 36 H 1.09008 * 109.60405 * 190.83472 * 12 11 10 37 37 H 1.08997 * 109.61382 * 70.32389 * 12 11 10 38 38 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.61170 * 64.26142 * 24 13 12 40 40 H 1.09003 * 109.61151 * 184.77730 * 24 13 12 41 41 H 1.09010 * 109.60830 * 244.54033 * 25 10 8 42 42 H 1.09001 * 109.61575 * 5.04949 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2915 1.1006 0.0000 4 6 3.6239 0.6605 0.0065 5 6 3.5818 -0.7183 0.0008 6 6 4.7000 -1.5873 0.0013 7 6 4.5147 -2.9307 0.0010 8 6 5.6324 -3.7993 0.0020 9 8 6.7579 -3.3434 -0.0887 10 7 5.4509 -5.1311 0.1031 11 6 6.6027 -6.0361 0.2213 12 6 6.5189 -7.0843 -0.8951 13 7 5.1655 -7.6574 -0.9006 14 6 4.9841 -8.9890 -0.7995 15 8 5.9376 -9.7202 -0.6073 16 6 3.6400 -9.5557 -0.9209 17 1 2.7846 -8.9026 -1.0102 18 6 3.4632 -10.9451 -0.9212 19 7 4.4983 -11.7354 -0.8136 20 14 1.7479 -11.6683 -1.0755 21 1 1.8316 -13.1507 -1.0506 22 1 0.9096 -11.2003 0.0575 23 1 1.1387 -11.2289 -2.3566 24 6 4.0140 -6.7528 -1.0244 25 6 4.0976 -5.7040 0.0975 26 8 2.2850 -1.0912 0.0005 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9556 2.1271 -0.0004 31 1 4.5087 1.2798 0.0125 32 1 5.7003 -1.1801 0.0020 33 1 3.5144 -3.3380 0.0000 34 1 6.5800 -6.5323 1.1915 35 1 7.5269 -5.4670 0.1202 36 1 7.2492 -7.8727 -0.7122 37 1 6.7200 -6.6118 -1.8565 38 1 4.3758 -12.6976 -0.8135 39 1 4.0408 -6.2571 -1.9949 40 1 3.0895 -7.3220 -0.9270 41 1 3.8965 -6.1766 1.0591 42 1 3.3672 -4.9157 -0.0852 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288008403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:40 Heat of formation + Delta-G solvation = -45.873372 kcal Electronic energy + Delta-G solvation = -25845.639570 eV Core-core repulsion = 21985.471625 eV Total energy + Delta-G solvation = -3860.167944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56492 -41.42897 -39.74819 -37.58427 -35.44383 -34.83943 -34.46259 -34.23480 -32.77591 -31.86892 -29.26147 -28.45582 -27.30416 -24.99265 -24.24273 -23.07671 -22.86488 -21.57722 -20.79539 -19.67029 -18.97539 -18.13904 -17.66821 -17.28063 -17.27165 -16.85112 -16.39181 -16.22450 -15.91124 -15.72554 -15.48440 -15.19814 -14.56334 -14.40655 -14.07559 -13.88581 -13.79422 -13.68348 -13.61107 -13.48082 -13.23323 -13.11968 -12.80081 -12.69446 -12.68290 -12.34405 -12.32160 -12.01824 -11.96448 -11.66351 -11.00163 -10.91026 -10.76044 -10.09646 -9.80692 -9.06959 -8.80718 -8.28885 -6.84315 -0.61967 1.08421 1.42412 1.45591 1.57222 1.67143 1.88041 1.92092 2.25577 2.36543 2.46981 2.80040 3.50572 3.58629 3.81459 3.85614 3.92770 3.95832 4.04037 4.14581 4.20062 4.33410 4.44756 4.50156 4.55945 4.65847 4.69989 4.75284 4.75601 4.82505 4.83289 4.88371 5.03814 5.09615 5.15621 5.25967 5.37144 5.43916 5.56850 5.70347 6.10529 6.10848 6.28845 6.39339 6.87928 7.05974 7.38377 8.44714 8.66848 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002847 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.227037 B = 9834.234331 C =11491.294194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.008 3.992 3 C -0.229 4.229 4 C -0.148 4.148 5 C -0.048 4.048 6 C 0.032 3.968 7 C -0.230 4.230 8 C 0.551 3.449 9 O -0.591 6.591 10 N -0.604 5.604 11 C 0.112 3.888 12 C 0.110 3.890 13 N -0.646 5.646 14 C 0.541 3.459 15 O -0.632 6.632 16 C -0.566 4.566 17 H 0.100 0.900 18 C 0.028 3.972 19 N -0.824 5.824 20 Si 0.997 3.003 21 H -0.280 1.280 22 H -0.250 1.250 23 H -0.252 1.252 24 C 0.105 3.895 25 C 0.096 3.904 26 O -0.180 6.180 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.179 0.821 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.274 0.726 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 26.141 1.890 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 C -0.248 4.248 4 C -0.167 4.167 5 C -0.096 4.096 6 C 0.012 3.988 7 C -0.250 4.250 8 C 0.345 3.655 9 O -0.475 6.475 10 N -0.335 5.335 11 C -0.012 4.012 12 C -0.015 4.015 13 N -0.383 5.383 14 C 0.348 3.652 15 O -0.519 6.519 16 C -0.602 4.602 17 H 0.118 0.882 18 C -0.187 4.187 19 N -0.453 5.453 20 Si 0.816 3.184 21 H -0.205 1.205 22 H -0.174 1.174 23 H -0.176 1.176 24 C -0.019 4.019 25 C -0.027 4.027 26 O -0.077 6.077 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.970 25.467 1.959 27.798 hybrid contribution 0.132 -0.782 -0.097 0.799 sum -10.838 24.685 1.862 27.023 Atomic orbital electron populations 1.20624 0.82319 1.05155 1.05562 1.23597 0.95798 0.83712 1.01253 1.21900 0.92145 1.00839 1.09908 1.22772 0.99883 0.92726 1.01324 1.19848 0.82031 0.94120 1.13598 1.20726 0.95960 0.91895 0.90174 1.22039 0.99165 0.94118 1.09708 1.17359 0.89729 0.82190 0.76173 1.90774 1.26999 1.76492 1.53244 1.48039 1.08142 1.05812 1.71541 1.21803 0.90237 0.90832 0.98354 1.21512 0.86897 0.95412 0.97650 1.48061 1.05457 1.06358 1.78436 1.18736 0.90675 0.79765 0.76053 1.90549 1.45094 1.59803 1.56447 1.21473 0.92267 0.92688 1.53780 0.88178 1.27031 1.02984 0.97469 0.91256 1.70192 1.33993 1.04782 1.36383 0.85079 0.76025 0.76833 0.80453 1.20460 1.17415 1.17620 1.22132 0.90907 0.91189 0.97692 1.22502 0.82934 0.97466 0.99815 1.84052 1.16548 1.35961 1.71184 0.90173 0.87472 0.87490 0.80409 0.80653 0.82151 0.83474 0.91847 0.88382 0.91336 0.92702 0.91650 0.92017 0.87532 0.90836 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.41 71.24 0.74 0.23 16 2 C 0.01 0.12 7.30 24.98 0.18 0.30 16 3 C -0.23 -2.95 10.76 22.06 0.24 -2.71 16 4 C -0.15 -2.27 10.90 22.71 0.25 -2.02 16 5 C -0.05 -0.94 6.84 23.03 0.16 -0.78 16 6 C 0.03 0.69 9.39 22.49 0.21 0.91 16 7 C -0.23 -5.54 8.80 22.48 0.20 -5.34 16 8 C 0.55 17.00 7.45 85.06 0.63 17.64 16 9 O -0.59 -21.61 15.53 -4.61 -0.07 -21.69 16 10 N -0.60 -19.11 2.95 -827.78 -2.44 -21.54 16 11 C 0.11 3.97 6.60 86.41 0.57 4.54 16 12 C 0.11 4.57 6.60 86.41 0.57 5.14 16 13 N -0.65 -29.42 2.94 -822.24 -2.42 -31.84 16 14 C 0.54 31.10 7.62 86.36 0.66 31.76 16 15 O -0.63 -42.44 14.45 -4.32 -0.06 -42.50 16 16 C -0.57 -30.80 8.87 24.83 0.22 -30.58 16 17 H 0.10 4.70 5.66 -2.91 -0.02 4.68 16 18 C 0.03 1.51 5.50 85.31 0.47 1.97 16 19 N -0.82 -50.07 11.84 21.84 0.26 -49.81 16 20 Si 1.00 39.48 29.56 68.60 2.03 41.50 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 23 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 24 C 0.10 3.59 6.51 86.57 0.56 4.15 16 25 C 0.10 2.66 6.48 86.57 0.56 3.22 16 26 O -0.18 -3.56 10.18 -6.10 -0.06 -3.62 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 31 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.16 3.31 7.47 -2.91 -0.02 3.29 16 33 H 0.15 3.03 5.43 -2.91 -0.02 3.01 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.10 3.39 6.99 -2.39 -0.02 3.37 16 36 H 0.07 3.22 6.99 -2.38 -0.02 3.20 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.11 3.63 5.34 -2.39 -0.01 3.62 16 41 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.13 2.55 5.33 -2.39 -0.01 2.53 16 Total: -1.00 -82.18 353.40 4.51 -77.66 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 1.06 Total: 23.42 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 6.22 Total: 28.42 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.60 Total: -103.20 kcal Atomic # 8 Polarization: -67.62 SS G_CDS: -0.20 Total: -67.81 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Total: -82.18 4.51 -77.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288008403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.791 kcal (2) G-P(sol) polarization free energy of solvation -82.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds