Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86812 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46607 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46863 * 300.00131 * 3 2 1 6 6 H 1.48496 * 109.46893 * 60.00330 * 3 2 1 7 7 C 1.38653 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99955 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99693 * 174.97269 * 9 7 2 11 11 C 1.38953 * 120.02911 * 185.35253 * 10 9 7 12 12 C 1.38126 * 120.06765 * 180.02562 * 11 10 9 13 13 C 1.38200 * 120.14419 * 0.02562 * 12 11 10 14 14 C 1.38928 * 120.06137 * 359.97438 * 13 12 11 15 15 N 1.39926 * 120.03570 * 179.97438 * 14 13 12 16 16 C 1.34769 * 120.00078 * 324.89902 * 15 14 13 17 17 O 1.21296 * 119.99908 * 4.50429 * 16 15 14 18 18 C 1.50699 * 120.00236 * 184.50367 * 16 15 14 19 19 C 1.52995 * 109.47329 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.29995 * 54.99883 * 19 18 16 21 21 C 1.52918 * 109.30253 * 174.58122 * 19 18 16 22 22 C 1.53274 * 108.71580 * 171.25970 * 21 19 18 23 23 C 1.53072 * 108.24443 * 292.18431 * 22 21 19 24 24 C 1.50178 * 109.89154 * 48.97117 * 23 22 21 25 25 O 1.21277 * 118.24755 * 162.39149 * 24 23 22 26 26 N 1.33354 * 123.50508 * 342.41031 * 24 23 22 27 27 C 1.38724 * 120.03682 * 5.34885 * 10 9 7 28 28 H 0.97004 * 119.99535 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96706 * 0.02695 * 11 10 9 30 30 H 1.08004 * 119.92911 * 179.97438 * 12 11 10 31 31 H 1.07991 * 119.97539 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99794 * 144.89315 * 15 14 13 33 33 H 1.09004 * 109.46954 * 300.00374 * 18 16 15 34 34 H 1.08995 * 109.46793 * 59.99929 * 18 16 15 35 35 H 1.09000 * 109.60726 * 290.82122 * 21 19 18 36 36 H 1.09004 * 109.60073 * 51.31067 * 21 19 18 37 37 H 1.09001 * 109.70668 * 172.54135 * 22 21 19 38 38 H 1.08996 * 109.84570 * 51.91271 * 22 21 19 39 39 H 1.08991 * 109.40499 * 288.83721 * 23 22 21 40 40 H 1.09006 * 109.39613 * 169.09063 * 23 22 21 41 41 H 0.97003 * 117.94429 * 182.20147 * 26 24 23 42 42 H 1.08008 * 120.06739 * 0.26091 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1071 11 6 1.4353 -4.7350 -0.2255 12 6 2.1827 -5.8916 -0.3335 13 6 3.5632 -5.8293 -0.3235 14 6 4.2036 -4.6021 -0.2053 15 7 5.6015 -4.5396 -0.1947 16 6 6.3155 -5.5224 0.3889 17 8 5.7515 -6.5003 0.8325 18 6 7.8146 -5.4064 0.4903 19 6 8.3760 -6.6461 1.1893 20 1 8.0423 -7.5395 0.6613 21 6 9.9040 -6.5889 1.1700 22 6 10.4495 -7.7135 2.0572 23 6 10.0894 -7.3948 3.5104 24 6 8.6335 -7.0404 3.6102 25 8 8.1072 -7.0775 4.7022 26 7 7.8882 -6.6875 2.5622 27 6 3.4556 -3.4384 -0.0979 28 1 -0.4850 0.8401 0.0004 29 1 0.3566 -4.7871 -0.2333 30 1 1.6871 -6.8468 -0.4250 31 1 4.1449 -6.7353 -0.4076 32 1 6.0566 -3.7890 -0.6075 33 1 8.2415 -5.3289 -0.5097 34 1 8.0720 -4.5169 1.0652 35 1 10.2623 -6.7259 0.1498 36 1 10.2386 -5.6240 1.5512 37 1 11.5328 -7.7720 1.9519 38 1 10.0008 -8.6637 1.7678 39 1 10.6911 -6.5546 3.8567 40 1 10.2935 -8.2658 4.1333 41 1 6.9634 -6.4434 2.7236 42 1 3.9511 -2.4835 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288910730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = -81.428301 kcal Electronic energy + Delta-G solvation = -25841.351114 eV Core-core repulsion = 21979.641392 eV Total energy + Delta-G solvation = -3861.709722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91037 -39.96130 -38.72394 -37.08517 -36.35342 -34.35806 -33.49937 -32.29171 -31.64867 -29.55355 -28.81931 -27.64466 -25.36097 -24.05604 -22.86800 -21.89338 -21.73243 -20.12205 -19.43785 -18.05827 -17.85321 -17.49558 -16.81173 -16.46194 -15.89241 -15.47244 -15.26231 -15.03965 -14.63993 -14.38269 -14.20415 -14.13036 -14.01771 -13.63898 -13.48013 -13.36899 -13.00842 -12.63981 -12.27564 -11.94309 -11.79919 -11.70282 -11.54223 -11.42964 -11.40115 -11.22445 -11.05476 -10.82228 -10.47576 -9.99262 -9.92021 -9.62119 -9.45203 -9.22626 -8.85284 -7.81007 -7.21746 -6.48638 -4.08641 1.87843 2.32484 2.51712 2.67187 3.07281 3.08869 3.10818 3.13277 3.14779 3.92054 4.09627 4.21726 4.26823 4.42041 4.52602 4.63877 4.76786 4.83396 5.02136 5.05574 5.11319 5.16827 5.24200 5.33204 5.44808 5.46983 5.52401 5.66490 5.77169 5.94776 6.00528 6.17476 6.22705 6.57990 6.70094 6.88910 6.92984 7.07150 7.25463 7.26855 7.37743 7.58270 7.75180 7.95224 8.10294 8.16957 8.96659 9.66762 10.69428 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.002752 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.955121 B =10172.695106 C =10907.043703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.176 6.176 10 C 0.167 3.833 11 C -0.197 4.197 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.173 3.827 15 N -0.666 5.666 16 C 0.507 3.493 17 O -0.520 6.520 18 C -0.157 4.157 19 C 0.157 3.843 20 H 0.086 0.914 21 C -0.134 4.134 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.515 3.485 25 O -0.561 6.561 26 N -0.709 5.709 27 C -0.255 4.255 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.407 0.593 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.407 0.593 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.146 -10.631 -2.277 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.217 4.217 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.310 5.310 16 C 0.294 3.706 17 O -0.395 6.395 18 C -0.197 4.197 19 C 0.051 3.949 20 H 0.104 0.896 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.176 4.176 24 C 0.302 3.698 25 O -0.440 6.440 26 N -0.363 5.363 27 C -0.277 4.277 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.242 0.758 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.246 0.754 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.312 -11.190 -1.390 24.111 hybrid contribution 0.346 1.503 -0.281 1.567 sum 21.658 -9.687 -1.672 23.784 Atomic orbital electron populations 1.70046 1.05946 1.27585 1.46031 1.25287 0.95840 0.98810 0.96560 0.85655 0.78993 0.80463 0.78303 1.19225 1.20124 1.20120 1.21313 0.91676 0.80846 1.53068 0.89198 1.84010 1.33992 1.11354 1.78569 1.19072 0.89417 0.88194 0.92046 1.20290 0.99807 0.90297 1.11302 1.20567 0.93184 0.96866 0.97807 1.20668 0.94346 0.96371 1.11079 1.17424 0.80806 0.94248 0.99449 1.43476 1.05735 1.25122 1.56667 1.20677 0.89529 0.82871 0.77529 1.90736 1.71952 1.30050 1.46805 1.22171 0.92527 1.00957 1.04085 1.20708 0.93838 0.97640 0.82700 0.89632 1.21961 0.93351 1.00122 1.01727 1.21643 1.01841 0.98999 0.93600 1.21664 0.92861 1.04314 0.98766 1.20188 0.89424 0.76375 0.83792 1.90775 1.73012 1.53697 1.26492 1.45708 1.15903 1.68280 1.06378 1.20817 0.93992 0.97570 1.15313 0.92023 0.86356 0.86605 0.85832 0.75769 0.86966 0.87792 0.89467 0.90521 0.90292 0.90861 0.88319 0.88270 0.75435 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 9 O -0.18 -4.96 9.76 0.04 0.00 -4.96 16 10 C 0.17 3.99 6.65 -39.14 -0.26 3.73 16 11 C -0.20 -4.20 9.99 -39.36 -0.39 -4.59 16 12 C -0.07 -1.21 10.03 -39.64 -0.40 -1.61 16 13 C -0.20 -3.77 8.70 -39.34 -0.34 -4.11 16 14 C 0.17 3.15 6.30 -83.72 -0.53 2.62 16 15 N -0.67 -8.85 5.33 -9.88 -0.05 -8.90 16 16 C 0.51 6.18 7.32 -10.99 -0.08 6.10 16 17 O -0.52 -8.18 11.97 5.54 0.07 -8.12 16 18 C -0.16 -1.10 5.35 -27.89 -0.15 -1.25 16 19 C 0.16 1.19 2.65 -68.38 -0.18 1.01 16 20 H 0.09 0.71 7.95 -51.93 -0.41 0.29 16 21 C -0.13 -0.61 5.28 -26.63 -0.14 -0.75 16 22 C -0.12 -0.60 6.04 -26.55 -0.16 -0.76 16 23 C -0.14 -1.00 6.02 -28.10 -0.17 -1.17 16 24 C 0.52 6.23 7.71 -11.87 -0.09 6.14 16 25 O -0.56 -9.58 17.78 5.56 0.10 -9.48 16 26 N -0.71 -7.91 5.00 -54.86 -0.27 -8.18 16 27 C -0.26 -5.37 9.08 -39.21 -0.36 -5.72 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 30 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.12 2.21 6.22 -52.49 -0.33 1.88 16 32 H 0.41 4.08 8.82 -40.82 -0.36 3.72 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.41 5.63 6.90 -40.82 -0.28 5.35 16 42 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -35.70 350.73 -7.50 -43.20 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.31 Total: 10.20 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.05 Total: -9.84 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.43 Total: -41.32 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.55 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.70 -7.50 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288910730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.225 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds