Wall clock time and date at job start Tue Mar 31 2020 12:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86812 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46607 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46863 * 300.00131 * 3 2 1 6 6 H 1.48496 * 109.46893 * 60.00330 * 3 2 1 7 7 C 1.38653 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99955 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.35756 * 116.99693 * 174.97269 * 9 7 2 11 11 C 1.38953 * 120.02911 * 185.35253 * 10 9 7 12 12 C 1.38126 * 120.06765 * 180.02562 * 11 10 9 13 13 C 1.38200 * 120.14419 * 0.02562 * 12 11 10 14 14 C 1.38928 * 120.06137 * 359.97438 * 13 12 11 15 15 N 1.39926 * 120.03570 * 179.97438 * 14 13 12 16 16 C 1.34769 * 120.00078 * 324.89902 * 15 14 13 17 17 O 1.21296 * 119.99908 * 4.50429 * 16 15 14 18 18 C 1.50699 * 120.00236 * 184.50367 * 16 15 14 19 19 C 1.52995 * 109.47329 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.29995 * 54.99883 * 19 18 16 21 21 C 1.52918 * 109.30253 * 174.58122 * 19 18 16 22 22 C 1.53274 * 108.71580 * 171.25970 * 21 19 18 23 23 C 1.53072 * 108.24443 * 292.18431 * 22 21 19 24 24 C 1.50178 * 109.89154 * 48.97117 * 23 22 21 25 25 O 1.21277 * 118.24755 * 162.39149 * 24 23 22 26 26 N 1.33354 * 123.50508 * 342.41031 * 24 23 22 27 27 C 1.38724 * 120.03682 * 5.34885 * 10 9 7 28 28 H 0.97004 * 119.99535 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96706 * 0.02695 * 11 10 9 30 30 H 1.08004 * 119.92911 * 179.97438 * 12 11 10 31 31 H 1.07991 * 119.97539 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99794 * 144.89315 * 15 14 13 33 33 H 1.09004 * 109.46954 * 300.00374 * 18 16 15 34 34 H 1.08995 * 109.46793 * 59.99929 * 18 16 15 35 35 H 1.09000 * 109.60726 * 290.82122 * 21 19 18 36 36 H 1.09004 * 109.60073 * 51.31067 * 21 19 18 37 37 H 1.09001 * 109.70668 * 172.54135 * 22 21 19 38 38 H 1.08996 * 109.84570 * 51.91271 * 22 21 19 39 39 H 1.08991 * 109.40499 * 288.83721 * 23 22 21 40 40 H 1.09006 * 109.39613 * 169.09063 * 23 22 21 41 41 H 0.97003 * 117.94429 * 182.20147 * 26 24 23 42 42 H 1.08008 * 120.06739 * 0.26091 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1071 11 6 1.4353 -4.7350 -0.2255 12 6 2.1827 -5.8916 -0.3335 13 6 3.5632 -5.8293 -0.3235 14 6 4.2036 -4.6021 -0.2053 15 7 5.6015 -4.5396 -0.1947 16 6 6.3155 -5.5224 0.3889 17 8 5.7515 -6.5003 0.8325 18 6 7.8146 -5.4064 0.4903 19 6 8.3760 -6.6461 1.1893 20 1 8.0423 -7.5395 0.6613 21 6 9.9040 -6.5889 1.1700 22 6 10.4495 -7.7135 2.0572 23 6 10.0894 -7.3948 3.5104 24 6 8.6335 -7.0404 3.6102 25 8 8.1072 -7.0775 4.7022 26 7 7.8882 -6.6875 2.5622 27 6 3.4556 -3.4384 -0.0979 28 1 -0.4850 0.8401 0.0004 29 1 0.3566 -4.7871 -0.2333 30 1 1.6871 -6.8468 -0.4250 31 1 4.1449 -6.7353 -0.4076 32 1 6.0566 -3.7890 -0.6075 33 1 8.2415 -5.3289 -0.5097 34 1 8.0720 -4.5169 1.0652 35 1 10.2623 -6.7259 0.1498 36 1 10.2386 -5.6240 1.5512 37 1 11.5328 -7.7720 1.9519 38 1 10.0008 -8.6637 1.7678 39 1 10.6911 -6.5546 3.8567 40 1 10.2935 -8.2658 4.1333 41 1 6.9634 -6.4434 2.7236 42 1 3.9511 -2.4835 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288910730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:42 Heat of formation + Delta-G solvation = -108.192639 kcal Electronic energy + Delta-G solvation = -25842.511703 eV Core-core repulsion = 21979.641392 eV Total energy + Delta-G solvation = -3862.870310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86919 -41.10773 -40.27987 -38.33356 -37.57345 -35.67061 -34.25452 -34.07765 -32.50756 -31.00974 -30.31534 -28.47844 -27.28608 -24.83159 -23.64942 -23.49109 -22.90993 -21.38356 -20.02928 -19.80454 -19.32647 -18.34092 -17.99273 -17.30968 -17.22964 -16.78547 -16.42485 -16.34991 -15.92069 -15.71979 -15.55319 -15.38493 -15.08577 -14.64580 -14.47690 -14.25673 -14.24620 -14.00872 -13.58685 -13.27290 -12.98093 -12.81240 -12.69367 -12.56243 -12.43818 -12.21533 -12.08568 -11.86780 -11.78125 -11.46290 -11.25133 -10.92988 -10.77833 -10.65296 -10.09891 -9.36837 -8.90165 -8.47255 -6.16392 0.38420 0.68573 1.35599 1.43993 1.54063 1.58260 1.62185 2.05624 2.17399 2.35401 2.82545 3.15274 3.47226 3.48955 3.64832 3.69107 3.96744 4.01800 4.12061 4.24245 4.30890 4.32599 4.43730 4.57752 4.63388 4.66515 4.71431 4.77542 4.92488 5.01163 5.02409 5.10496 5.12839 5.15204 5.38294 5.40609 5.46539 5.64560 5.66444 5.75625 6.00922 6.16638 6.42039 6.48475 6.97028 7.11459 7.21065 7.76916 8.76119 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.002752 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.955121 B =10172.695106 C =10907.043703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.132 3.868 11 C -0.216 4.216 12 C -0.056 4.056 13 C -0.198 4.198 14 C 0.184 3.816 15 N -0.660 5.660 16 C 0.503 3.497 17 O -0.557 6.557 18 C -0.143 4.143 19 C 0.149 3.851 20 H 0.079 0.921 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.130 4.130 24 C 0.506 3.494 25 O -0.625 6.625 26 N -0.711 5.711 27 C -0.260 4.260 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.425 0.575 33 H 0.158 0.842 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.389 0.611 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.815 -11.056 -3.716 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.135 6.135 10 C 0.080 3.920 11 C -0.236 4.236 12 C -0.075 4.075 13 C -0.219 4.219 14 C 0.090 3.910 15 N -0.306 5.306 16 C 0.294 3.706 17 O -0.435 6.435 18 C -0.182 4.182 19 C 0.045 3.955 20 H 0.097 0.903 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.170 4.170 24 C 0.295 3.705 25 O -0.509 6.509 26 N -0.361 5.361 27 C -0.281 4.281 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.224 0.776 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 26.072 -11.656 -2.890 28.704 hybrid contribution -1.018 1.304 0.150 1.661 sum 25.054 -10.351 -2.739 27.246 Atomic orbital electron populations 1.70200 1.08154 1.28765 1.48830 1.26631 0.96841 1.02852 0.95827 0.84513 0.78481 0.74694 0.78403 1.16891 1.19352 1.19782 1.21867 0.92583 0.81263 1.53150 0.87764 1.83980 1.35731 1.12544 1.81218 1.19613 0.90923 0.87962 0.93452 1.20493 1.00167 0.90548 1.12347 1.20949 0.93413 0.97271 0.95829 1.21005 0.94482 0.96991 1.09388 1.17464 0.83366 0.93046 0.97161 1.43517 1.03610 1.26438 1.57024 1.21714 0.91624 0.81515 0.75792 1.90725 1.73173 1.31575 1.48008 1.22256 0.87876 1.01248 1.06858 1.21036 0.96325 0.97712 0.80455 0.90276 1.22007 0.90293 1.00512 1.03594 1.21674 1.03586 0.98900 0.91442 1.21712 0.89271 1.04905 1.01098 1.21132 0.91282 0.75191 0.82917 1.90736 1.74622 1.56586 1.28982 1.45953 1.14988 1.67152 1.07964 1.20865 0.93123 0.98733 1.15407 0.91858 0.86617 0.83172 0.84479 0.73637 0.82407 0.86100 0.86280 0.89392 0.87417 0.91398 0.86619 0.88284 0.77574 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.67 21.61 0.30 -55.88 16 2 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 3 Si 1.02 41.58 29.55 68.60 2.03 43.61 16 4 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 8 H 0.11 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.63 9.76 -22.77 -0.22 -13.85 16 10 C 0.13 6.55 6.65 22.56 0.15 6.70 16 11 C -0.22 -9.44 9.99 22.41 0.22 -9.22 16 12 C -0.06 -2.03 10.03 22.23 0.22 -1.81 16 13 C -0.20 -7.00 8.70 22.43 0.20 -6.81 16 14 C 0.18 6.44 6.30 38.14 0.24 6.68 16 15 N -0.66 -15.74 5.33 -303.55 -1.62 -17.36 16 16 C 0.50 10.83 7.32 87.66 0.64 11.47 16 17 O -0.56 -16.58 11.97 -3.08 -0.04 -16.62 16 18 C -0.14 -1.35 5.35 29.85 0.16 -1.19 16 19 C 0.15 1.74 2.65 45.10 0.12 1.86 16 20 H 0.08 1.07 7.95 -2.39 -0.02 1.05 16 21 C -0.13 -0.50 5.28 30.66 0.16 -0.34 16 22 C -0.12 -0.67 6.04 30.71 0.19 -0.48 16 23 C -0.13 -1.62 6.02 29.71 0.18 -1.44 16 24 C 0.51 11.96 7.71 87.71 0.68 12.64 16 25 O -0.63 -22.14 17.78 -3.02 -0.05 -22.20 16 26 N -0.71 -15.02 5.00 -446.65 -2.24 -17.25 16 27 C -0.26 -10.98 9.08 22.51 0.20 -10.78 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.14 4.57 6.22 -2.92 -0.02 4.55 16 32 H 0.43 7.05 8.82 -92.71 -0.82 6.23 16 33 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.09 0.23 8.10 -2.38 -0.02 0.21 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.07 0.49 8.13 -2.39 -0.02 0.47 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.39 10.76 6.90 -92.71 -0.64 10.12 16 42 H 0.13 5.36 5.64 -2.91 -0.02 5.35 16 Total: -1.00 -86.27 350.73 2.25 -84.02 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.38 Total: 31.92 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.47 Total: -16.40 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -3.56 Total: -90.49 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.31 Total: -52.66 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -86.27 2.25 -84.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288910730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.171 kcal (2) G-P(sol) polarization free energy of solvation -86.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds