Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48504 * 109.47139 * 270.00683 * 3 2 1 5 5 H 1.48506 * 109.47009 * 30.00137 * 3 2 1 6 6 H 1.48498 * 109.47276 * 150.00372 * 3 2 1 7 7 C 1.38651 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00040 * 174.97825 * 9 7 2 11 11 C 1.38949 * 120.03534 * 185.37467 * 10 9 7 12 12 C 1.38122 * 120.07496 * 180.02562 * 11 10 9 13 13 C 1.38205 * 120.13572 * 0.03923 * 12 11 10 14 14 C 1.38920 * 120.06682 * 359.95920 * 13 12 11 15 15 N 1.39924 * 120.03202 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00362 * 35.13009 * 15 14 13 17 17 O 1.21288 * 120.00099 * 355.49254 * 16 15 14 18 18 C 1.50700 * 120.00560 * 175.49559 * 16 15 14 19 19 C 1.52998 * 109.47710 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.12689 * 304.48135 * 19 18 16 21 21 C 1.52917 * 109.30291 * 185.00020 * 19 18 16 22 22 C 1.53346 * 108.67265 * 188.93597 * 21 19 18 23 23 C 1.53069 * 108.42460 * 67.53241 * 22 21 19 24 24 C 1.50180 * 109.89057 * 311.09520 * 23 22 21 25 25 O 1.21279 * 118.24454 * 197.60663 * 24 23 22 26 26 N 1.33343 * 123.50611 * 17.58911 * 24 23 22 27 27 C 1.38738 * 120.03185 * 5.67285 * 10 9 7 28 28 H 0.97001 * 120.00186 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.96106 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.93568 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.96626 * 179.97438 * 13 12 11 32 32 H 0.97005 * 119.99873 * 215.12165 * 15 14 13 33 33 H 1.08998 * 109.47186 * 59.99205 * 18 16 15 34 34 H 1.09004 * 109.47070 * 300.00515 * 18 16 15 35 35 H 1.08992 * 109.60370 * 69.17780 * 21 19 18 36 36 H 1.09001 * 109.60163 * 308.68931 * 21 19 18 37 37 H 1.09000 * 109.67058 * 187.26594 * 22 21 19 38 38 H 1.08995 * 109.67594 * 307.75763 * 22 21 19 39 39 H 1.08999 * 109.40434 * 71.23034 * 23 22 21 40 40 H 1.09001 * 109.39693 * 190.96916 * 23 22 21 41 41 H 0.97005 * 117.94698 * 177.77692 * 26 24 23 42 42 H 1.07997 * 120.06891 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4401 0.6999 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1070 11 6 1.4354 -4.7350 -0.2259 12 6 2.1827 -5.8916 -0.3337 13 6 3.5633 -5.8292 -0.3228 14 6 4.2036 -4.6021 -0.2042 15 7 5.6014 -4.5397 -0.1938 16 6 6.3198 -5.3954 -0.9474 17 8 5.7594 -6.2720 -1.5709 18 6 7.8195 -5.2634 -1.0155 19 6 8.3861 -6.3497 -1.9318 20 1 8.0555 -7.3254 -1.5759 21 6 9.9139 -6.2912 -1.9003 22 6 10.4634 -7.2264 -2.9843 23 6 10.0983 -6.6474 -4.3534 24 6 8.6401 -6.2892 -4.3842 25 8 8.1116 -6.1274 -5.4638 26 7 7.8955 -6.1400 -3.2882 27 6 3.4556 -3.4390 -0.0909 28 1 -0.4850 0.8400 0.0004 29 1 0.3566 -4.7871 -0.2340 30 1 1.6872 -6.8467 -0.4264 31 1 4.1449 -6.7354 -0.4069 32 1 6.0534 -3.8804 0.3557 33 1 8.2398 -5.3758 -0.0162 34 1 8.0802 -4.2816 -1.4109 35 1 10.2721 -6.6140 -0.9229 36 1 10.2449 -5.2712 -2.0953 37 1 11.5473 -7.2970 -2.8929 38 1 10.0207 -8.2163 -2.8739 39 1 10.6946 -5.7543 -4.5396 40 1 10.3058 -7.3874 -5.1264 41 1 6.9690 -5.8754 -3.4006 42 1 3.9510 -2.4842 0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288910731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -81.288788 kcal Electronic energy + Delta-G solvation = -25861.972042 eV Core-core repulsion = 22000.268370 eV Total energy + Delta-G solvation = -3861.703672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.90825 -39.95569 -38.72279 -37.07929 -36.35117 -34.35952 -33.48987 -32.28972 -31.64886 -29.55400 -28.81854 -27.64471 -25.35722 -24.05289 -22.86528 -21.89405 -21.73106 -20.12122 -19.42941 -18.05659 -17.85357 -17.48993 -16.80721 -16.45601 -15.88989 -15.47170 -15.26117 -15.03941 -14.64624 -14.37761 -14.20184 -14.13425 -14.01287 -13.62363 -13.49370 -13.36998 -13.00951 -12.60064 -12.28157 -11.94265 -11.81217 -11.68959 -11.53143 -11.42750 -11.40055 -11.21561 -11.06078 -10.82329 -10.49596 -9.98141 -9.91020 -9.63750 -9.44182 -9.21940 -8.84531 -7.80953 -7.21712 -6.48223 -4.08313 1.87908 2.32516 2.52362 2.67358 3.08067 3.08588 3.11789 3.13891 3.14337 3.92544 4.09690 4.21891 4.27156 4.42557 4.52682 4.63889 4.76914 4.83508 5.02372 5.04707 5.11260 5.16991 5.25897 5.33468 5.45097 5.47337 5.52497 5.66640 5.77264 5.94682 6.00502 6.17458 6.22700 6.57972 6.70965 6.88889 6.93009 7.06975 7.25971 7.27174 7.37801 7.58278 7.75208 7.95485 8.10835 8.17208 8.96970 9.66852 10.69787 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002813 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.479718 B = 9949.709542 C =10754.831670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.167 3.833 11 C -0.197 4.197 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.174 3.826 15 N -0.666 5.666 16 C 0.507 3.493 17 O -0.520 6.520 18 C -0.157 4.157 19 C 0.157 3.843 20 H 0.085 0.915 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.515 3.485 25 O -0.561 6.561 26 N -0.708 5.708 27 C -0.256 4.256 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.407 0.593 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.408 0.592 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.142 -10.891 0.937 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.217 4.217 12 C -0.084 4.084 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.310 5.310 16 C 0.294 3.706 17 O -0.395 6.395 18 C -0.198 4.198 19 C 0.051 3.949 20 H 0.103 0.897 21 C -0.171 4.171 22 C -0.161 4.161 23 C -0.176 4.176 24 C 0.302 3.698 25 O -0.440 6.440 26 N -0.363 5.363 27 C -0.277 4.277 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.242 0.758 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.246 0.754 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.304 -11.274 -0.031 24.103 hybrid contribution 0.352 1.433 0.400 1.529 sum 21.655 -9.840 0.369 23.789 Atomic orbital electron populations 1.70033 1.05946 1.27705 1.45934 1.25279 0.95839 0.98803 0.96537 0.85725 0.78838 0.80174 0.78728 1.19872 1.20217 1.19296 1.21265 0.91644 0.80858 1.53186 0.89257 1.84008 1.33993 1.11339 1.78553 1.19071 0.89421 0.88202 0.92041 1.20287 0.99807 0.90313 1.11298 1.20566 0.93182 0.96920 0.97741 1.20667 0.94335 0.96139 1.11348 1.17421 0.80797 0.93817 0.99882 1.43475 1.05700 1.36390 1.45426 1.20676 0.89512 0.81585 0.78820 1.90732 1.72186 1.32911 1.43703 1.22176 0.92491 1.02167 1.02927 1.20699 0.93818 0.98552 0.81833 0.89676 1.21968 0.93311 1.01275 1.00576 1.21650 1.01802 0.99393 0.93241 1.21659 0.92827 1.03564 0.99535 1.20187 0.89472 0.76500 0.83642 1.90776 1.73001 1.51762 1.28429 1.45710 1.15759 1.69508 1.05288 1.20816 0.94010 0.97137 1.15742 0.91968 0.86357 0.86605 0.85839 0.75782 0.86976 0.87798 0.89432 0.90546 0.90301 0.90888 0.88319 0.88259 0.75378 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.78 9.49 30.88 0.29 -10.49 16 8 H 0.09 2.24 5.20 -52.49 -0.27 1.97 16 9 O -0.18 -4.95 9.76 0.05 0.00 -4.95 16 10 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16 11 C -0.20 -4.20 9.99 -39.36 -0.39 -4.59 16 12 C -0.07 -1.21 10.03 -39.64 -0.40 -1.61 16 13 C -0.20 -3.78 8.69 -39.34 -0.34 -4.12 16 14 C 0.17 3.15 6.29 -83.72 -0.53 2.63 16 15 N -0.67 -8.84 5.33 -9.88 -0.05 -8.89 16 16 C 0.51 6.20 7.32 -10.99 -0.08 6.12 16 17 O -0.52 -8.20 11.93 5.55 0.07 -8.14 16 18 C -0.16 -1.10 5.35 -27.88 -0.15 -1.25 16 19 C 0.16 1.19 2.65 -68.37 -0.18 1.01 16 20 H 0.09 0.70 7.96 -51.93 -0.41 0.29 16 21 C -0.13 -0.61 5.30 -26.59 -0.14 -0.75 16 22 C -0.12 -0.60 6.03 -26.52 -0.16 -0.76 16 23 C -0.14 -1.01 6.03 -28.10 -0.17 -1.18 16 24 C 0.52 6.27 7.71 -11.87 -0.09 6.18 16 25 O -0.56 -9.64 17.78 5.56 0.10 -9.54 16 26 N -0.71 -7.97 5.00 -54.86 -0.27 -8.25 16 27 C -0.26 -5.37 9.08 -39.21 -0.36 -5.72 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.12 2.21 6.23 -52.48 -0.33 1.88 16 32 H 0.41 4.06 8.82 -40.82 -0.36 3.70 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.41 5.69 6.84 -40.82 -0.28 5.41 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -35.77 350.67 -7.50 -43.27 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.31 Total: 10.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.05 Total: -9.83 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.43 Total: -41.44 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.77 -7.50 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288910731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.020 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds