Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48504 * 109.47139 * 270.00683 * 3 2 1 5 5 H 1.48506 * 109.47009 * 30.00137 * 3 2 1 6 6 H 1.48498 * 109.47276 * 150.00372 * 3 2 1 7 7 C 1.38651 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99877 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00040 * 174.97825 * 9 7 2 11 11 C 1.38949 * 120.03534 * 185.37467 * 10 9 7 12 12 C 1.38122 * 120.07496 * 180.02562 * 11 10 9 13 13 C 1.38205 * 120.13572 * 0.03923 * 12 11 10 14 14 C 1.38920 * 120.06682 * 359.95920 * 13 12 11 15 15 N 1.39924 * 120.03202 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00362 * 35.13009 * 15 14 13 17 17 O 1.21288 * 120.00099 * 355.49254 * 16 15 14 18 18 C 1.50700 * 120.00560 * 175.49559 * 16 15 14 19 19 C 1.52998 * 109.47710 * 179.97438 * 18 16 15 20 20 H 1.08999 * 109.12689 * 304.48135 * 19 18 16 21 21 C 1.52917 * 109.30291 * 185.00020 * 19 18 16 22 22 C 1.53346 * 108.67265 * 188.93597 * 21 19 18 23 23 C 1.53069 * 108.42460 * 67.53241 * 22 21 19 24 24 C 1.50180 * 109.89057 * 311.09520 * 23 22 21 25 25 O 1.21279 * 118.24454 * 197.60663 * 24 23 22 26 26 N 1.33343 * 123.50611 * 17.58911 * 24 23 22 27 27 C 1.38738 * 120.03185 * 5.67285 * 10 9 7 28 28 H 0.97001 * 120.00186 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.96106 * 0.02562 * 11 10 9 30 30 H 1.07996 * 119.93568 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.96626 * 179.97438 * 13 12 11 32 32 H 0.97005 * 119.99873 * 215.12165 * 15 14 13 33 33 H 1.08998 * 109.47186 * 59.99205 * 18 16 15 34 34 H 1.09004 * 109.47070 * 300.00515 * 18 16 15 35 35 H 1.08992 * 109.60370 * 69.17780 * 21 19 18 36 36 H 1.09001 * 109.60163 * 308.68931 * 21 19 18 37 37 H 1.09000 * 109.67058 * 187.26594 * 22 21 19 38 38 H 1.08995 * 109.67594 * 307.75763 * 22 21 19 39 39 H 1.08999 * 109.40434 * 71.23034 * 23 22 21 40 40 H 1.09001 * 109.39693 * 190.96916 * 23 22 21 41 41 H 0.97005 * 117.94698 * 177.77692 * 26 24 23 42 42 H 1.07997 * 120.06891 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4401 0.6999 7 6 2.0087 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1070 11 6 1.4354 -4.7350 -0.2259 12 6 2.1827 -5.8916 -0.3337 13 6 3.5633 -5.8292 -0.3228 14 6 4.2036 -4.6021 -0.2042 15 7 5.6014 -4.5397 -0.1938 16 6 6.3198 -5.3954 -0.9474 17 8 5.7594 -6.2720 -1.5709 18 6 7.8195 -5.2634 -1.0155 19 6 8.3861 -6.3497 -1.9318 20 1 8.0555 -7.3254 -1.5759 21 6 9.9139 -6.2912 -1.9003 22 6 10.4634 -7.2264 -2.9843 23 6 10.0983 -6.6474 -4.3534 24 6 8.6401 -6.2892 -4.3842 25 8 8.1116 -6.1274 -5.4638 26 7 7.8955 -6.1400 -3.2882 27 6 3.4556 -3.4390 -0.0909 28 1 -0.4850 0.8400 0.0004 29 1 0.3566 -4.7871 -0.2340 30 1 1.6872 -6.8467 -0.4264 31 1 4.1449 -6.7354 -0.4069 32 1 6.0534 -3.8804 0.3557 33 1 8.2398 -5.3758 -0.0162 34 1 8.0802 -4.2816 -1.4109 35 1 10.2721 -6.6140 -0.9229 36 1 10.2449 -5.2712 -2.0953 37 1 11.5473 -7.2970 -2.8929 38 1 10.0207 -8.2163 -2.8739 39 1 10.6946 -5.7543 -4.5396 40 1 10.3058 -7.3874 -5.1264 41 1 6.9690 -5.8754 -3.4006 42 1 3.9510 -2.4842 0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288910731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -108.121621 kcal Electronic energy + Delta-G solvation = -25863.135601 eV Core-core repulsion = 22000.268370 eV Total energy + Delta-G solvation = -3862.867231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87162 -41.10464 -40.27987 -38.33452 -37.56982 -35.67331 -34.25686 -34.07206 -32.51139 -31.01075 -30.31656 -28.48079 -27.28612 -24.83153 -23.65101 -23.49251 -22.90966 -21.38518 -20.02425 -19.80429 -19.32727 -18.33895 -17.99084 -17.31206 -17.22588 -16.78601 -16.42933 -16.36096 -15.93048 -15.71909 -15.58387 -15.34796 -15.08490 -14.65217 -14.47485 -14.26044 -14.22957 -14.00491 -13.60038 -13.26035 -12.97958 -12.80697 -12.69775 -12.56121 -12.44253 -12.21735 -12.12146 -11.87157 -11.77977 -11.45781 -11.25423 -10.93205 -10.77799 -10.64488 -10.09719 -9.36892 -8.90237 -8.47438 -6.16555 0.38394 0.68519 1.35059 1.44460 1.52707 1.58242 1.62228 2.05357 2.17301 2.35571 2.82552 3.14261 3.46812 3.50154 3.64724 3.69155 3.97040 4.01723 4.12007 4.24106 4.30830 4.32477 4.43619 4.57806 4.63323 4.66458 4.71390 4.77490 4.92533 5.01137 5.02368 5.09910 5.12976 5.15189 5.38161 5.40522 5.46425 5.64448 5.66363 5.75854 6.00558 6.16568 6.42107 6.48542 6.96797 7.11404 7.21222 7.76656 8.75757 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.002813 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.479718 B = 9949.709542 C =10754.831670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.132 3.868 11 C -0.216 4.216 12 C -0.056 4.056 13 C -0.198 4.198 14 C 0.184 3.816 15 N -0.660 5.660 16 C 0.503 3.497 17 O -0.557 6.557 18 C -0.143 4.143 19 C 0.149 3.851 20 H 0.079 0.921 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.130 4.130 24 C 0.505 3.495 25 O -0.626 6.626 26 N -0.711 5.711 27 C -0.260 4.260 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.425 0.575 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.389 0.611 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.815 -11.564 2.187 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.169 1.169 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.080 3.920 11 C -0.236 4.236 12 C -0.075 4.075 13 C -0.219 4.219 14 C 0.090 3.910 15 N -0.306 5.306 16 C 0.294 3.706 17 O -0.435 6.435 18 C -0.183 4.183 19 C 0.044 3.956 20 H 0.097 0.903 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.170 4.170 24 C 0.294 3.706 25 O -0.510 6.510 26 N -0.361 5.361 27 C -0.281 4.281 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.264 0.736 33 H 0.176 0.824 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.225 0.775 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 26.068 -11.997 1.279 28.725 hybrid contribution -1.010 1.309 -0.013 1.653 sum 25.058 -10.688 1.266 27.272 Atomic orbital electron populations 1.70189 1.08135 1.28834 1.48762 1.26617 0.96835 1.02829 0.95820 0.84586 0.78076 0.74473 0.79078 1.19263 1.19735 1.16937 1.21825 0.92567 0.81293 1.53252 0.87804 1.83978 1.35715 1.12510 1.81216 1.19613 0.90936 0.87967 0.93446 1.20491 1.00169 0.90565 1.12335 1.20947 0.93412 0.97333 0.95763 1.21004 0.94470 0.96777 1.09631 1.17461 0.83362 0.92621 0.97593 1.43514 1.03571 1.37392 1.46091 1.21716 0.91615 0.80142 0.77173 1.90722 1.73405 1.34483 1.44885 1.22262 0.87816 1.02771 1.05411 1.21034 0.96312 0.98476 0.79737 0.90290 1.22016 0.90240 1.02013 1.02094 1.21680 1.03552 0.98940 0.91440 1.21707 0.89201 1.04461 1.01594 1.21136 0.91350 0.75271 0.82798 1.90737 1.74615 1.54773 1.30825 1.45958 1.14839 1.68359 1.06910 1.20869 0.93138 0.98295 1.15827 0.91849 0.86616 0.83173 0.84487 0.73627 0.82388 0.86103 0.86216 0.89425 0.87416 0.91416 0.86625 0.88270 0.77540 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.29 13.67 21.61 0.30 -55.99 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 3 Si 1.02 41.78 29.55 68.60 2.03 43.80 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.41 -23.56 9.49 67.92 0.64 -22.92 16 8 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.60 9.76 -22.75 -0.22 -13.82 16 10 C 0.13 6.55 6.64 22.56 0.15 6.70 16 11 C -0.22 -9.44 9.99 22.41 0.22 -9.22 16 12 C -0.06 -2.03 10.03 22.23 0.22 -1.81 16 13 C -0.20 -7.01 8.69 22.43 0.19 -6.81 16 14 C 0.18 6.44 6.29 38.14 0.24 6.68 16 15 N -0.66 -15.72 5.33 -303.57 -1.62 -17.34 16 16 C 0.50 10.85 7.32 87.66 0.64 11.49 16 17 O -0.56 -16.64 11.93 -3.06 -0.04 -16.67 16 18 C -0.14 -1.36 5.35 29.85 0.16 -1.20 16 19 C 0.15 1.75 2.65 45.10 0.12 1.87 16 20 H 0.08 1.06 7.96 -2.39 -0.02 1.04 16 21 C -0.13 -0.50 5.30 30.68 0.16 -0.34 16 22 C -0.12 -0.68 6.03 30.73 0.19 -0.49 16 23 C -0.13 -1.63 6.03 29.71 0.18 -1.45 16 24 C 0.51 12.05 7.71 87.72 0.68 12.72 16 25 O -0.63 -22.29 17.78 -3.03 -0.05 -22.35 16 26 N -0.71 -15.14 5.00 -446.65 -2.23 -17.38 16 27 C -0.26 -10.98 9.08 22.51 0.20 -10.77 16 28 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.14 4.57 6.23 -2.91 -0.02 4.55 16 32 H 0.43 7.01 8.82 -92.70 -0.82 6.19 16 33 H 0.16 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.12 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.09 0.23 8.11 -2.39 -0.02 0.22 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.07 0.49 8.13 -2.39 -0.02 0.47 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.39 10.87 6.84 -92.70 -0.63 10.24 16 42 H 0.13 5.36 5.64 -2.91 -0.02 5.35 16 Total: -1.00 -86.46 350.67 2.26 -84.21 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.37 Total: 31.94 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.47 Total: -16.40 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.56 Total: -90.71 kcal Atomic # 8 Polarization: -52.53 SS G_CDS: -0.31 Total: -52.84 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -86.46 2.26 -84.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288910731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.913 kcal (2) G-P(sol) polarization free energy of solvation -86.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds