Wall clock time and date at job start Tue Mar 31 2020 13:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 C 1.53001 * 109.46656 * 184.99854 * 3 2 1 5 5 O 1.42896 * 109.47132 * 64.99569 * 3 2 1 6 6 C 1.42899 * 113.99866 * 60.00233 * 5 3 2 7 7 C 1.50697 * 109.46870 * 304.99554 * 3 2 1 8 8 N 1.30059 * 126.18043 * 299.97689 * 7 3 2 9 9 O 1.21281 * 110.50616 * 180.02562 * 8 7 3 10 10 C 1.34241 * 109.68874 * 359.97438 * 9 8 7 11 11 C 1.47583 * 126.68508 * 179.97438 * 10 9 8 12 12 C 1.39614 * 120.18943 * 180.02562 * 11 10 9 13 13 C 1.37871 * 119.91883 * 179.72062 * 12 11 10 14 14 C 1.38537 * 120.31545 * 0.02602 * 13 12 11 15 15 C 1.38072 * 120.38802 * 359.97190 * 14 13 12 16 16 C 1.38783 * 120.07278 * 0.02562 * 15 14 13 17 17 O 1.35572 * 120.15550 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99986 * 354.39484 * 17 16 15 19 19 H 1.08008 * 119.99693 * 5.07213 * 18 17 16 20 20 C 1.38678 * 120.00138 * 185.06187 * 18 17 16 21 21 N 1.31531 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47338 * 90.00401 * 22 20 18 24 24 H 1.48499 * 109.47169 * 210.00745 * 22 20 18 25 25 H 1.48504 * 109.47012 * 330.00407 * 22 20 18 26 26 N 1.32227 * 106.62523 * 0.22511 * 10 9 8 27 27 H 1.08998 * 109.47255 * 300.00306 * 1 2 3 28 28 H 1.09005 * 109.46911 * 60.00478 * 1 2 3 29 29 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47255 * 239.99693 * 2 1 3 31 31 H 1.09005 * 109.46911 * 119.99522 * 2 1 3 32 32 H 1.08999 * 109.46992 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47267 * 299.99538 * 4 3 2 34 34 H 1.08997 * 109.47319 * 59.99685 * 4 3 2 35 35 H 1.09001 * 109.47669 * 59.99810 * 6 5 3 36 36 H 1.09002 * 109.47253 * 179.97438 * 6 5 3 37 37 H 1.09001 * 109.47187 * 299.99379 * 6 5 3 38 38 H 1.08003 * 120.04086 * 359.70287 * 12 11 10 39 39 H 1.07999 * 119.84224 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.80714 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.95758 * 179.97438 * 15 14 13 42 42 H 0.97000 * 119.99535 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 -0.1257 5 8 1.6618 2.0815 1.2210 6 6 2.1823 1.4503 2.3926 7 6 1.4391 2.1877 -1.1639 8 7 1.5760 1.8862 -2.4217 9 8 0.9725 2.6765 -3.1161 10 6 0.3698 3.5917 -2.3407 11 6 -0.4609 4.7234 -2.7959 12 6 -1.0253 5.5986 -1.8660 13 6 -1.7956 6.6574 -2.2976 14 6 -2.0136 6.8577 -3.6510 15 6 -1.4617 6.0001 -4.5817 16 6 -0.6836 4.9291 -4.1651 17 8 -0.1404 4.0863 -5.0776 18 6 -0.4879 4.2734 -6.3666 19 1 -1.1046 5.1160 -6.6428 20 6 -0.0534 3.3841 -7.3380 21 7 0.6974 2.3579 -7.0016 22 14 -0.5344 3.6438 -9.1242 23 1 0.4869 4.4885 -9.7941 24 1 -0.6174 2.3296 -9.8106 25 1 -1.8551 4.3199 -9.1880 26 7 0.6700 3.2847 -1.0901 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.9281 2.4720 -0.1262 33 1 3.9994 0.9054 0.7161 34 1 3.8532 0.9570 -1.0570 35 1 3.2716 1.4518 2.3528 36 1 1.8507 1.9951 3.2766 37 1 1.8219 0.4228 2.4423 38 1 -0.8588 5.4463 -0.8098 39 1 -2.2319 7.3335 -1.5772 40 1 -2.6188 7.6895 -3.9800 41 1 -1.6365 6.1624 -5.6350 42 1 1.0010 1.7357 -7.6810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290586281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:36 Heat of formation + Delta-G solvation = 26.079545 kcal Electronic energy + Delta-G solvation = -27084.825631 eV Core-core repulsion = 23227.777799 eV Total energy + Delta-G solvation = -3857.047832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.65851 -39.26988 -39.15914 -36.63560 -35.01422 -33.70138 -32.54790 -31.98339 -30.21245 -29.55667 -28.86184 -27.27978 -25.57534 -24.19823 -23.73210 -23.19774 -21.48427 -21.42455 -19.52704 -18.17013 -17.82331 -17.23723 -16.86586 -15.88569 -15.56082 -15.40207 -15.16457 -14.71789 -14.47339 -14.14514 -13.88914 -13.80034 -13.33871 -13.32180 -13.15213 -12.78746 -12.47771 -12.12433 -11.91876 -11.84478 -11.67968 -11.66104 -11.39478 -11.12465 -11.08774 -11.00314 -10.85281 -10.79163 -10.71678 -10.53633 -10.23520 -9.90489 -9.59889 -9.44507 -8.99166 -8.12304 -7.38963 -6.59910 -4.18893 1.26104 2.21531 2.34961 3.05417 3.06279 3.06998 3.11559 3.40875 3.64458 3.82563 4.02782 4.42611 4.55912 4.87808 4.89973 4.92959 5.02148 5.12956 5.19407 5.32493 5.39270 5.48347 5.52626 5.56538 5.57932 5.64369 5.72744 5.82437 5.87681 5.94658 6.07606 6.08352 6.13011 6.30516 6.37365 6.52358 6.59289 6.63779 6.89488 7.03773 7.14028 7.17404 7.20605 7.56644 7.79659 8.81194 8.95074 9.43836 10.54214 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.004216 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.494458 B = 6640.064716 C = 8139.767528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.216 3.784 4 C -0.175 4.175 5 O -0.355 6.355 6 C 0.023 3.977 7 C 0.172 3.828 8 N -0.390 5.390 9 O 0.116 5.884 10 C 0.253 3.747 11 C -0.130 4.130 12 C -0.011 4.011 13 C -0.223 4.223 14 C -0.046 4.046 15 C -0.232 4.232 16 C 0.176 3.824 17 O -0.147 6.147 18 C -0.398 4.398 19 H 0.098 0.902 20 C 0.045 3.955 21 N -0.836 5.836 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 N -0.485 5.485 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -0.419 11.907 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.175 3.825 4 C -0.233 4.233 5 O -0.273 6.273 6 C -0.073 4.073 7 C -0.101 4.101 8 N -0.097 5.097 9 O 0.055 5.945 10 C 0.040 3.960 11 C -0.135 4.135 12 C -0.030 4.030 13 C -0.242 4.242 14 C -0.065 4.065 15 C -0.251 4.251 16 C 0.117 3.883 17 O -0.046 6.046 18 C -0.473 4.473 19 H 0.116 0.884 20 C -0.163 4.163 21 N -0.467 5.467 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.189 1.189 26 N -0.220 5.220 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.216 -1.356 11.968 12.106 hybrid contribution -0.141 0.051 -1.028 1.039 sum 1.076 -1.305 10.940 11.070 Atomic orbital electron populations 1.21671 0.94561 1.01386 1.02694 1.22150 0.97871 0.94932 1.03358 1.19221 0.92611 0.89672 0.81025 1.22412 0.93930 1.03569 1.03405 1.88098 1.73818 1.52967 1.12420 1.22855 0.98353 0.98104 0.87999 1.24752 0.98894 0.93981 0.92511 1.74555 1.17012 1.14364 1.03816 1.85678 1.46329 1.28801 1.33676 1.26224 0.93756 0.92274 0.83773 1.16292 1.09282 0.97160 0.90770 1.20743 0.92585 0.91532 0.98190 1.20542 1.06758 1.01336 0.95558 1.20991 0.95745 0.96819 0.92954 1.21087 1.05257 0.98006 1.00780 1.19290 0.90576 0.90054 0.88362 1.83973 1.56905 1.47066 1.16630 1.21468 1.33954 1.12581 0.79300 0.88424 1.25392 0.95937 0.94647 1.00287 1.70071 1.29967 1.11804 1.34892 0.85678 0.79272 0.78350 0.79989 1.19655 1.20072 1.18937 1.72119 1.17311 1.13697 1.18897 0.91953 0.92856 0.92573 0.90107 0.90500 0.91310 0.91085 0.90456 0.93761 0.89383 0.93685 0.85360 0.86587 0.86743 0.84665 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.49 37.16 0.35 -1.75 16 2 C -0.14 -1.95 4.77 -26.73 -0.13 -2.08 16 3 C 0.22 3.37 0.79 -91.77 -0.07 3.30 16 4 C -0.18 -2.33 8.23 37.16 0.31 -2.03 16 5 O -0.36 -5.40 9.66 -35.23 -0.34 -5.74 16 6 C 0.02 0.24 10.21 101.05 1.03 1.27 16 7 C 0.17 3.46 5.00 -156.56 -0.78 2.67 16 8 N -0.39 -8.78 12.15 31.22 0.38 -8.40 16 9 O 0.12 2.89 10.01 -1.92 -0.02 2.87 16 10 C 0.25 5.79 7.96 -13.90 -0.11 5.68 16 11 C -0.13 -2.84 5.89 -104.82 -0.62 -3.46 16 12 C -0.01 -0.20 9.70 -39.20 -0.38 -0.58 16 13 C -0.22 -3.61 10.03 -39.61 -0.40 -4.01 16 14 C -0.05 -0.76 10.03 -39.53 -0.40 -1.16 16 15 C -0.23 -4.64 9.16 -39.44 -0.36 -5.00 16 16 C 0.18 4.10 6.66 -38.63 -0.26 3.84 16 17 O -0.15 -3.97 8.21 -17.82 -0.15 -4.11 16 18 C -0.40 -10.42 9.49 30.89 0.29 -10.13 16 19 H 0.10 2.31 5.21 -52.48 -0.27 2.04 16 20 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 21 N -0.84 -23.52 13.67 55.48 0.76 -22.76 16 22 Si 0.94 19.40 29.55 -169.99 -5.02 14.38 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 N -0.49 -10.40 10.98 -10.17 -0.11 -10.51 16 27 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 28 H 0.05 0.94 7.07 -51.93 -0.37 0.57 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.80 6.29 -51.93 -0.33 0.48 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.72 6.54 -51.93 -0.34 0.38 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.39 6.42 -51.93 -0.33 0.06 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.40 6.31 -51.93 -0.33 0.07 16 38 H 0.13 2.19 7.88 -52.48 -0.41 1.78 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.14 2.62 5.64 -52.49 -0.30 2.33 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -30.79 352.76 -5.98 -36.77 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.18 Total: 4.54 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.62 Total: -12.34 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 1.03 Total: -41.68 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.51 Total: -6.99 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.79 -5.98 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290586281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.848 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds