Wall clock time and date at job start Tue Mar 31 2020 13:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 C 1.53001 * 109.46656 * 184.99854 * 3 2 1 5 5 O 1.42896 * 109.47132 * 64.99569 * 3 2 1 6 6 C 1.42899 * 113.99866 * 60.00233 * 5 3 2 7 7 C 1.50697 * 109.46870 * 304.99554 * 3 2 1 8 8 N 1.30059 * 126.18043 * 299.97689 * 7 3 2 9 9 O 1.21281 * 110.50616 * 180.02562 * 8 7 3 10 10 C 1.34241 * 109.68874 * 359.97438 * 9 8 7 11 11 C 1.47583 * 126.68508 * 179.97438 * 10 9 8 12 12 C 1.39614 * 120.18943 * 180.02562 * 11 10 9 13 13 C 1.37871 * 119.91883 * 179.72062 * 12 11 10 14 14 C 1.38537 * 120.31545 * 0.02602 * 13 12 11 15 15 C 1.38072 * 120.38802 * 359.97190 * 14 13 12 16 16 C 1.38783 * 120.07278 * 0.02562 * 15 14 13 17 17 O 1.35572 * 120.15550 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99986 * 354.39484 * 17 16 15 19 19 H 1.08008 * 119.99693 * 5.07213 * 18 17 16 20 20 C 1.38678 * 120.00138 * 185.06187 * 18 17 16 21 21 N 1.31531 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47338 * 90.00401 * 22 20 18 24 24 H 1.48499 * 109.47169 * 210.00745 * 22 20 18 25 25 H 1.48504 * 109.47012 * 330.00407 * 22 20 18 26 26 N 1.32227 * 106.62523 * 0.22511 * 10 9 8 27 27 H 1.08998 * 109.47255 * 300.00306 * 1 2 3 28 28 H 1.09005 * 109.46911 * 60.00478 * 1 2 3 29 29 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47255 * 239.99693 * 2 1 3 31 31 H 1.09005 * 109.46911 * 119.99522 * 2 1 3 32 32 H 1.08999 * 109.46992 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47267 * 299.99538 * 4 3 2 34 34 H 1.08997 * 109.47319 * 59.99685 * 4 3 2 35 35 H 1.09001 * 109.47669 * 59.99810 * 6 5 3 36 36 H 1.09002 * 109.47253 * 179.97438 * 6 5 3 37 37 H 1.09001 * 109.47187 * 299.99379 * 6 5 3 38 38 H 1.08003 * 120.04086 * 359.70287 * 12 11 10 39 39 H 1.07999 * 119.84224 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.80714 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.95758 * 179.97438 * 15 14 13 42 42 H 0.97000 * 119.99535 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 -0.1257 5 8 1.6618 2.0815 1.2210 6 6 2.1823 1.4503 2.3926 7 6 1.4391 2.1877 -1.1639 8 7 1.5760 1.8862 -2.4217 9 8 0.9725 2.6765 -3.1161 10 6 0.3698 3.5917 -2.3407 11 6 -0.4609 4.7234 -2.7959 12 6 -1.0253 5.5986 -1.8660 13 6 -1.7956 6.6574 -2.2976 14 6 -2.0136 6.8577 -3.6510 15 6 -1.4617 6.0001 -4.5817 16 6 -0.6836 4.9291 -4.1651 17 8 -0.1404 4.0863 -5.0776 18 6 -0.4879 4.2734 -6.3666 19 1 -1.1046 5.1160 -6.6428 20 6 -0.0534 3.3841 -7.3380 21 7 0.6974 2.3579 -7.0016 22 14 -0.5344 3.6438 -9.1242 23 1 0.4869 4.4885 -9.7941 24 1 -0.6174 2.3296 -9.8106 25 1 -1.8551 4.3199 -9.1880 26 7 0.6700 3.2847 -1.0901 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.9281 2.4720 -0.1262 33 1 3.9994 0.9054 0.7161 34 1 3.8532 0.9570 -1.0570 35 1 3.2716 1.4518 2.3528 36 1 1.8507 1.9951 3.2766 37 1 1.8219 0.4228 2.4423 38 1 -0.8588 5.4463 -0.8098 39 1 -2.2319 7.3335 -1.5772 40 1 -2.6188 7.6895 -3.9800 41 1 -1.6365 6.1624 -5.6350 42 1 1.0010 1.7357 -7.6810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290586281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:36 Heat of formation + Delta-G solvation = 4.972679 kcal Electronic energy + Delta-G solvation = -27085.740893 eV Core-core repulsion = 23227.777799 eV Total energy + Delta-G solvation = -3857.963094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.34959 -40.90176 -40.34092 -38.30338 -36.56920 -35.04945 -34.38044 -33.48644 -31.49259 -31.03000 -30.46442 -28.19109 -27.43829 -25.60778 -25.22400 -24.54488 -23.13139 -22.90099 -20.90683 -19.93040 -19.34205 -18.94829 -18.40429 -17.33048 -16.85681 -16.61914 -16.44630 -16.38880 -16.10352 -15.69300 -15.32921 -15.20880 -14.76027 -14.50156 -14.37579 -14.32073 -13.60843 -13.53705 -13.39463 -13.31125 -13.15079 -12.94755 -12.73534 -12.64558 -12.57105 -12.34946 -12.31364 -12.11762 -12.06785 -12.00222 -11.71237 -11.44579 -11.32743 -10.84068 -10.54778 -9.68822 -9.07009 -8.48229 -6.17536 -0.39989 0.64979 0.74225 1.36817 1.43605 1.46699 1.54633 1.92456 2.14648 2.23773 2.60483 2.80100 3.11985 3.29611 3.37598 3.53268 3.75602 3.97128 4.10441 4.11754 4.25594 4.28373 4.39993 4.44550 4.50590 4.52888 4.54978 4.62388 4.68993 4.74174 4.82924 4.88077 4.92275 4.97134 5.01367 5.03735 5.07393 5.14364 5.18609 5.50872 5.55824 5.65902 5.93612 6.08557 6.15039 6.92517 7.21769 7.65569 8.71278 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.004216 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.494458 B = 6640.064716 C = 8139.767528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.211 3.789 4 C -0.171 4.171 5 O -0.382 6.382 6 C 0.014 3.986 7 C 0.186 3.814 8 N -0.413 5.413 9 O 0.068 5.932 10 C 0.242 3.758 11 C -0.150 4.150 12 C -0.016 4.016 13 C -0.192 4.192 14 C -0.029 4.029 15 C -0.244 4.244 16 C 0.149 3.851 17 O -0.200 6.200 18 C -0.420 4.420 19 H 0.115 0.885 20 C -0.015 4.015 21 N -0.902 5.902 22 Si 1.019 2.981 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.246 1.246 26 N -0.489 5.489 27 H 0.065 0.935 28 H 0.008 0.992 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 1.357 14.363 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.170 3.830 4 C -0.228 4.228 5 O -0.300 6.300 6 C -0.082 4.082 7 C -0.088 4.088 8 N -0.128 5.128 9 O 0.016 5.984 10 C 0.029 3.971 11 C -0.154 4.154 12 C -0.035 4.035 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.263 4.263 16 C 0.093 3.907 17 O -0.103 6.103 18 C -0.495 4.495 19 H 0.132 0.868 20 C -0.216 4.216 21 N -0.537 5.537 22 Si 0.838 3.162 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.169 1.169 26 N -0.225 5.225 27 H 0.084 0.916 28 H 0.028 0.972 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.184 0.816 40 H 0.182 0.818 41 H 0.155 0.845 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.112 0.491 14.440 14.448 hybrid contribution 0.144 -0.297 -1.346 1.386 sum 0.032 0.195 13.093 13.095 Atomic orbital electron populations 1.21646 0.95500 1.02229 1.00596 1.22183 0.96974 0.93730 1.04990 1.19496 0.93569 0.89906 0.80057 1.22404 0.92330 1.03380 1.04731 1.88054 1.74668 1.54082 1.13232 1.23176 0.99511 0.99077 0.86391 1.25740 0.96844 0.92996 0.93238 1.74526 1.18393 1.14985 1.04894 1.85653 1.47673 1.29960 1.35153 1.26734 0.93768 0.92416 0.84211 1.16814 1.09728 0.97700 0.91202 1.21064 0.92592 0.91568 0.98287 1.21168 1.03561 0.99873 0.96433 1.21539 0.94152 0.96594 0.92429 1.21309 1.05241 0.97815 1.01906 1.19879 0.91456 0.90740 0.88640 1.83985 1.59591 1.49394 1.17288 1.22012 1.34452 1.13332 0.79692 0.86808 1.26659 0.95688 0.94090 1.05124 1.70250 1.33257 1.13866 1.36353 0.84583 0.79720 0.78300 0.73614 1.18818 1.20100 1.16936 1.72134 1.17831 1.14443 1.18058 0.91566 0.97243 0.90311 0.90921 0.86271 0.92516 0.86961 0.91426 0.92054 0.87878 0.91925 0.83976 0.81631 0.81808 0.84531 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.49 71.98 0.68 -3.37 16 2 C -0.14 -3.61 4.77 30.60 0.15 -3.46 16 3 C 0.21 6.48 0.79 -11.54 -0.01 6.47 16 4 C -0.17 -4.36 8.23 71.98 0.59 -3.77 16 5 O -0.38 -10.99 9.66 -148.98 -1.44 -12.42 16 6 C 0.01 0.23 10.21 113.37 1.16 1.39 16 7 C 0.19 7.78 5.00 138.53 0.69 8.48 16 8 N -0.41 -20.08 12.15 -58.47 -0.71 -20.79 16 9 O 0.07 3.72 10.01 86.92 0.87 4.59 16 10 C 0.24 11.79 7.96 87.22 0.69 12.48 16 11 C -0.15 -6.74 5.89 -19.99 -0.12 -6.86 16 12 C -0.02 -0.54 9.70 22.52 0.22 -0.32 16 13 C -0.19 -5.33 10.03 22.25 0.22 -5.11 16 14 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16 15 C -0.24 -9.55 9.16 22.36 0.20 -9.35 16 16 C 0.15 7.19 6.66 22.89 0.15 7.34 16 17 O -0.20 -11.66 8.21 -2.96 -0.02 -11.68 16 18 C -0.42 -23.30 9.49 67.93 0.64 -22.66 16 19 H 0.11 5.59 5.21 -2.91 -0.02 5.57 16 20 C -0.02 -0.85 5.49 84.84 0.47 -0.39 16 21 N -0.90 -54.93 13.67 21.62 0.30 -54.64 16 22 Si 1.02 41.37 29.55 68.60 2.03 43.39 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 24 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 26 N -0.49 -21.77 10.98 -302.63 -3.32 -25.09 16 27 H 0.07 1.80 7.82 -2.39 -0.02 1.78 16 28 H 0.01 0.32 7.07 -2.38 -0.02 0.30 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.12 2.05 6.29 -2.38 -0.01 2.03 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.90 6.54 -2.39 -0.02 1.88 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 0.84 6.42 -2.39 -0.02 0.82 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 0.85 6.31 -2.39 -0.02 0.83 16 38 H 0.14 4.56 7.88 -2.91 -0.02 4.54 16 39 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.14 5.25 5.64 -2.91 -0.02 5.23 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.73 352.76 4.72 -72.01 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.06 Total: 24.37 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 5.97 Total: -19.73 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.74 Total: -100.52 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.59 Total: -19.52 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -76.73 4.72 -72.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290586281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.983 kcal (2) G-P(sol) polarization free energy of solvation -76.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds