Wall clock time and date at job start Tue Mar 31 2020 13:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47047 * 2 1 4 4 C 1.52998 * 109.47051 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46791 * 299.99550 * 3 2 1 6 6 C 1.42893 * 114.00278 * 299.99908 * 5 3 2 7 7 C 1.50706 * 109.47029 * 59.99679 * 3 2 1 8 8 N 1.30052 * 126.18037 * 4.97169 * 7 3 2 9 9 O 1.21278 * 110.50802 * 179.74673 * 8 7 3 10 10 C 1.34242 * 109.68566 * 0.43840 * 9 8 7 11 11 C 1.47579 * 126.68711 * 179.83365 * 10 9 8 12 12 C 1.39615 * 120.19049 * 179.68264 * 11 10 9 13 13 C 1.37880 * 119.91933 * 180.02562 * 12 11 10 14 14 C 1.38547 * 120.30962 * 0.02562 * 13 12 11 15 15 C 1.38060 * 120.39495 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.07082 * 0.02562 * 15 14 13 17 17 O 1.35568 * 120.15469 * 179.97438 * 16 15 14 18 18 C 1.34810 * 116.99959 * 354.40823 * 17 16 15 19 19 H 1.07993 * 120.00177 * 5.05956 * 18 17 16 20 20 C 1.38688 * 119.99891 * 185.06227 * 18 17 16 21 21 N 1.31528 * 119.99847 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47348 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47308 * 120.00004 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00059 * 22 20 18 26 26 N 1.32226 * 106.62449 * 359.57402 * 10 9 8 27 27 H 1.08996 * 109.46832 * 60.00656 * 1 2 3 28 28 H 1.08999 * 109.46519 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47502 * 300.00101 * 1 2 3 30 30 H 1.08995 * 109.47502 * 239.99899 * 2 1 3 31 31 H 1.09004 * 109.47167 * 119.99327 * 2 1 3 32 32 H 1.08996 * 109.47116 * 299.99521 * 4 3 2 33 33 H 1.08995 * 109.47213 * 60.00073 * 4 3 2 34 34 H 1.09000 * 109.46988 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47010 * 300.00376 * 6 5 3 36 36 H 1.09001 * 109.47137 * 60.00004 * 6 5 3 37 37 H 1.09000 * 109.47519 * 179.97438 * 6 5 3 38 38 H 1.07995 * 120.04599 * 0.05114 * 12 11 10 39 39 H 1.07997 * 119.84441 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.79764 * 179.71865 * 14 13 12 41 41 H 1.07996 * 119.96382 * 180.02562 * 15 14 13 42 42 H 0.96996 * 120.00378 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9855 1.5198 -2.3950 7 6 1.5376 2.1530 1.2305 8 7 0.8629 1.6171 2.2047 9 8 0.6086 2.4467 3.0520 10 6 1.1064 3.6375 2.6829 11 6 1.0098 4.9045 3.4334 12 6 1.5865 6.0689 2.9226 13 6 1.4933 7.2494 3.6288 14 6 0.8301 7.2865 4.8446 15 6 0.2551 6.1428 5.3618 16 6 0.3392 4.9457 4.6645 17 8 -0.2243 3.8215 5.1710 18 6 -0.7511 3.9053 6.4090 19 1 -0.7857 4.8572 6.9178 20 6 -1.2486 2.7690 7.0293 21 7 -1.2069 1.6098 6.4094 22 14 -1.9792 2.8853 8.7445 23 1 -1.9085 4.2909 9.2185 24 1 -3.3970 2.4450 8.7096 25 1 -1.2124 2.0124 9.6694 26 7 1.7050 3.4527 1.5185 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.9330 0.9290 0.8909 33 1 3.9337 0.9286 -0.8891 34 1 3.9333 2.4702 0.0011 35 1 3.0743 1.5214 -2.4446 36 1 1.6210 0.4937 -2.4447 37 1 1.5823 2.0890 -3.2326 38 1 2.1045 6.0451 1.9753 39 1 1.9395 8.1495 3.2323 40 1 0.7660 8.2147 5.3929 41 1 -0.2606 6.1797 6.3099 42 1 -1.5552 0.8151 6.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290586285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:41 Heat of formation + Delta-G solvation = 28.683262 kcal Electronic energy + Delta-G solvation = -27074.307288 eV Core-core repulsion = 23217.372362 eV Total energy + Delta-G solvation = -3856.934926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.68761 -39.28275 -39.16385 -36.64979 -35.05069 -33.76153 -32.54865 -31.87251 -30.11573 -29.65807 -28.92381 -27.24655 -25.58619 -24.29205 -23.63342 -23.11584 -21.49786 -21.39276 -19.65548 -18.18348 -17.89807 -17.20743 -16.83963 -15.86237 -15.59802 -15.42464 -15.29685 -14.72901 -14.52903 -13.98210 -13.86818 -13.67737 -13.30149 -13.22594 -13.09188 -12.81658 -12.56409 -12.17101 -11.88139 -11.83949 -11.67477 -11.60519 -11.31446 -11.15515 -11.10024 -11.04025 -10.87847 -10.83068 -10.64267 -10.52405 -10.29044 -9.74971 -9.60630 -9.54097 -9.00493 -8.13645 -7.40006 -6.60911 -4.19728 1.24145 2.20150 2.26145 2.96315 3.05002 3.05956 3.11961 3.56828 3.66249 3.81803 4.09789 4.41320 4.54434 4.73877 4.89462 5.00653 5.01671 5.19327 5.22122 5.34842 5.43730 5.49007 5.52819 5.59191 5.61983 5.63192 5.70793 5.84181 5.91821 6.01203 6.11084 6.12931 6.19578 6.32306 6.49181 6.55569 6.58423 6.65586 6.88786 7.02377 7.12905 7.14240 7.19566 7.55318 7.78762 8.80282 8.92101 9.42839 10.53264 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.004303 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.262778 B = 6505.412476 C = 8237.250626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.216 3.784 4 C -0.172 4.172 5 O -0.365 6.365 6 C 0.026 3.974 7 C 0.169 3.831 8 N -0.380 5.380 9 O 0.116 5.884 10 C 0.256 3.744 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.223 4.223 14 C -0.046 4.046 15 C -0.232 4.232 16 C 0.177 3.823 17 O -0.147 6.147 18 C -0.397 4.397 19 H 0.099 0.901 20 C 0.045 3.955 21 N -0.835 5.835 22 Si 0.944 3.056 23 H -0.264 1.264 24 H -0.274 1.274 25 H -0.274 1.274 26 N -0.492 5.492 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 1.427 -9.814 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.175 3.825 4 C -0.230 4.230 5 O -0.282 6.282 6 C -0.071 4.071 7 C -0.104 4.104 8 N -0.088 5.088 9 O 0.055 5.945 10 C 0.043 3.957 11 C -0.136 4.136 12 C -0.031 4.031 13 C -0.242 4.242 14 C -0.065 4.065 15 C -0.251 4.251 16 C 0.117 3.883 17 O -0.045 6.045 18 C -0.473 4.473 19 H 0.116 0.884 20 C -0.163 4.163 21 N -0.467 5.467 22 Si 0.768 3.232 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.199 1.199 26 N -0.228 5.228 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.858 0.297 -10.221 11.784 hybrid contribution -0.284 -0.042 0.936 0.979 sum 5.575 0.255 -9.285 10.833 Atomic orbital electron populations 1.21836 0.94397 1.01693 1.03319 1.22047 0.98193 0.94739 1.02994 1.19259 0.92844 0.89624 0.80775 1.22349 0.93842 1.03994 1.02796 1.88047 1.74151 1.53382 1.12668 1.22829 0.99379 0.98521 0.86361 1.24760 0.99493 0.88678 0.97497 1.74586 1.17342 1.15697 1.01181 1.85685 1.56729 1.14930 1.37165 1.26139 0.90725 0.89256 0.89570 1.16288 1.13314 0.88037 0.95932 1.20728 0.94149 0.90121 0.98076 1.20544 1.08416 0.97467 0.97767 1.20990 0.93840 0.97092 0.94570 1.21092 1.08518 0.92203 1.03272 1.19288 0.89896 0.87886 0.91192 1.83971 1.60407 1.28760 1.31409 1.21520 1.39372 0.96797 0.89573 0.88352 1.25400 0.96762 0.94105 1.00020 1.70074 1.40177 0.99043 1.37377 0.85609 0.78741 0.79078 0.79817 1.18841 1.19928 1.19934 1.72008 1.24132 1.14518 1.12099 0.92709 0.92740 0.90746 0.90921 0.90219 0.91178 0.91226 0.90549 0.93623 0.93655 0.89489 0.85435 0.86581 0.86732 0.84643 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.47 37.16 0.35 -2.01 16 2 C -0.14 -1.97 4.31 -26.73 -0.12 -2.09 16 3 C 0.22 3.40 0.79 -91.77 -0.07 3.33 16 4 C -0.17 -2.23 8.23 37.16 0.31 -1.93 16 5 O -0.36 -5.67 9.66 -35.23 -0.34 -6.01 16 6 C 0.03 0.27 10.21 101.05 1.03 1.30 16 7 C 0.17 3.41 6.30 -156.57 -0.99 2.42 16 8 N -0.38 -8.54 9.44 31.21 0.29 -8.25 16 9 O 0.12 2.89 10.01 -1.92 -0.02 2.87 16 10 C 0.26 5.83 7.96 -13.90 -0.11 5.72 16 11 C -0.13 -2.84 5.89 -104.82 -0.62 -3.45 16 12 C -0.01 -0.20 9.70 -39.20 -0.38 -0.58 16 13 C -0.22 -3.58 10.03 -39.60 -0.40 -3.97 16 14 C -0.05 -0.76 10.03 -39.53 -0.40 -1.15 16 15 C -0.23 -4.60 9.16 -39.44 -0.36 -4.96 16 16 C 0.18 4.08 6.66 -38.62 -0.26 3.82 16 17 O -0.15 -3.95 8.21 -17.79 -0.15 -4.09 16 18 C -0.40 -10.37 9.49 30.90 0.29 -10.08 16 19 H 0.10 2.33 5.21 -52.49 -0.27 2.05 16 20 C 0.05 1.17 5.49 -17.52 -0.10 1.07 16 21 N -0.84 -23.43 13.67 55.48 0.76 -22.67 16 22 Si 0.94 19.36 29.55 -169.99 -5.02 14.33 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 26 N -0.49 -10.45 11.26 -10.18 -0.11 -10.57 16 27 H 0.05 0.80 7.68 -51.93 -0.40 0.40 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.39 5.69 -51.93 -0.30 1.10 16 30 H 0.07 0.79 6.54 -51.93 -0.34 0.45 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.41 6.42 -51.93 -0.33 0.07 16 36 H 0.04 0.42 6.42 -51.93 -0.33 0.09 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.13 2.13 7.88 -52.49 -0.41 1.72 16 39 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.14 2.62 5.64 -52.49 -0.30 2.32 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -30.54 350.00 -6.24 -36.78 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.12 Total: 4.89 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.81 Total: -12.56 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.94 Total: -41.49 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.51 Total: -7.24 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.54 -6.24 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290586285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.468 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds