Wall clock time and date at job start Tue Mar 31 2020 13:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47047 * 2 1 4 4 C 1.52998 * 109.47051 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46791 * 299.99550 * 3 2 1 6 6 C 1.42893 * 114.00278 * 299.99908 * 5 3 2 7 7 C 1.50706 * 109.47029 * 59.99679 * 3 2 1 8 8 N 1.30052 * 126.18037 * 4.97169 * 7 3 2 9 9 O 1.21278 * 110.50802 * 179.74673 * 8 7 3 10 10 C 1.34242 * 109.68566 * 0.43840 * 9 8 7 11 11 C 1.47579 * 126.68711 * 179.83365 * 10 9 8 12 12 C 1.39615 * 120.19049 * 179.68264 * 11 10 9 13 13 C 1.37880 * 119.91933 * 180.02562 * 12 11 10 14 14 C 1.38547 * 120.30962 * 0.02562 * 13 12 11 15 15 C 1.38060 * 120.39495 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.07082 * 0.02562 * 15 14 13 17 17 O 1.35568 * 120.15469 * 179.97438 * 16 15 14 18 18 C 1.34810 * 116.99959 * 354.40823 * 17 16 15 19 19 H 1.07993 * 120.00177 * 5.05956 * 18 17 16 20 20 C 1.38688 * 119.99891 * 185.06227 * 18 17 16 21 21 N 1.31528 * 119.99847 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47348 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47308 * 120.00004 * 22 20 18 25 25 H 1.48506 * 109.47059 * 240.00059 * 22 20 18 26 26 N 1.32226 * 106.62449 * 359.57402 * 10 9 8 27 27 H 1.08996 * 109.46832 * 60.00656 * 1 2 3 28 28 H 1.08999 * 109.46519 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47502 * 300.00101 * 1 2 3 30 30 H 1.08995 * 109.47502 * 239.99899 * 2 1 3 31 31 H 1.09004 * 109.47167 * 119.99327 * 2 1 3 32 32 H 1.08996 * 109.47116 * 299.99521 * 4 3 2 33 33 H 1.08995 * 109.47213 * 60.00073 * 4 3 2 34 34 H 1.09000 * 109.46988 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47010 * 300.00376 * 6 5 3 36 36 H 1.09001 * 109.47137 * 60.00004 * 6 5 3 37 37 H 1.09000 * 109.47519 * 179.97438 * 6 5 3 38 38 H 1.07995 * 120.04599 * 0.05114 * 12 11 10 39 39 H 1.07997 * 119.84441 * 180.02562 * 13 12 11 40 40 H 1.07997 * 119.79764 * 179.71865 * 14 13 12 41 41 H 1.07996 * 119.96382 * 180.02562 * 15 14 13 42 42 H 0.96996 * 120.00378 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9855 1.5198 -2.3950 7 6 1.5376 2.1530 1.2305 8 7 0.8629 1.6171 2.2047 9 8 0.6086 2.4467 3.0520 10 6 1.1064 3.6375 2.6829 11 6 1.0098 4.9045 3.4334 12 6 1.5865 6.0689 2.9226 13 6 1.4933 7.2494 3.6288 14 6 0.8301 7.2865 4.8446 15 6 0.2551 6.1428 5.3618 16 6 0.3392 4.9457 4.6645 17 8 -0.2243 3.8215 5.1710 18 6 -0.7511 3.9053 6.4090 19 1 -0.7857 4.8572 6.9178 20 6 -1.2486 2.7690 7.0293 21 7 -1.2069 1.6098 6.4094 22 14 -1.9792 2.8853 8.7445 23 1 -1.9085 4.2909 9.2185 24 1 -3.3970 2.4450 8.7096 25 1 -1.2124 2.0124 9.6694 26 7 1.7050 3.4527 1.5185 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 3.9330 0.9290 0.8909 33 1 3.9337 0.9286 -0.8891 34 1 3.9333 2.4702 0.0011 35 1 3.0743 1.5214 -2.4446 36 1 1.6210 0.4937 -2.4447 37 1 1.5823 2.0890 -3.2326 38 1 2.1045 6.0451 1.9753 39 1 1.9395 8.1495 3.2323 40 1 0.7660 8.2147 5.3929 41 1 -0.2606 6.1797 6.3099 42 1 -1.5552 0.8151 6.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290586285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:40 Heat of formation + Delta-G solvation = 8.322216 kcal Electronic energy + Delta-G solvation = -27075.190210 eV Core-core repulsion = 23217.372362 eV Total energy + Delta-G solvation = -3857.817847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.36889 -40.90218 -40.35662 -38.30407 -36.60750 -35.11680 -34.37966 -33.37690 -31.30089 -31.17613 -30.53708 -28.16420 -27.44289 -25.71844 -25.12196 -24.46283 -23.12491 -22.87397 -21.02070 -19.93130 -19.42346 -18.90500 -18.39078 -17.27562 -16.98764 -16.62837 -16.48184 -16.38179 -16.14848 -15.68923 -15.35312 -14.97488 -14.65908 -14.50620 -14.29770 -14.28989 -13.76211 -13.57221 -13.32341 -13.27000 -13.10192 -12.90703 -12.76058 -12.64865 -12.60351 -12.35448 -12.32882 -12.11016 -12.07862 -11.95622 -11.78115 -11.32786 -11.28037 -10.85319 -10.60066 -9.68588 -9.06683 -8.48392 -6.17533 -0.40456 0.64782 0.69067 1.36760 1.37046 1.45706 1.55532 1.92233 2.14451 2.33362 2.70884 2.80187 3.12105 3.28338 3.30285 3.54476 3.72387 4.03951 4.12566 4.18269 4.26394 4.31102 4.41504 4.46575 4.51197 4.54765 4.56817 4.62866 4.69664 4.77314 4.85437 4.86680 4.93871 4.95642 5.05972 5.07616 5.11394 5.14437 5.33141 5.51118 5.55939 5.66192 5.93733 6.08734 6.11948 6.92518 7.19876 7.65679 8.71310 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.004303 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.262778 B = 6505.412476 C = 8237.250626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.212 3.788 4 C -0.166 4.166 5 O -0.393 6.393 6 C 0.016 3.984 7 C 0.178 3.822 8 N -0.400 5.400 9 O 0.069 5.931 10 C 0.244 3.756 11 C -0.150 4.150 12 C -0.015 4.015 13 C -0.192 4.192 14 C -0.029 4.029 15 C -0.244 4.244 16 C 0.149 3.851 17 O -0.200 6.200 18 C -0.418 4.418 19 H 0.115 0.885 20 C -0.016 4.016 21 N -0.902 5.902 22 Si 1.019 2.981 23 H -0.243 1.243 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.493 5.493 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.783 4.013 -11.249 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.170 3.830 4 C -0.224 4.224 5 O -0.312 6.312 6 C -0.079 4.079 7 C -0.096 4.096 8 N -0.114 5.114 9 O 0.015 5.985 10 C 0.031 3.969 11 C -0.154 4.154 12 C -0.035 4.035 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.263 4.263 16 C 0.093 3.907 17 O -0.103 6.103 18 C -0.494 4.494 19 H 0.132 0.868 20 C -0.216 4.216 21 N -0.537 5.537 22 Si 0.838 3.162 23 H -0.166 1.166 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.229 5.229 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.161 0.839 39 H 0.184 0.816 40 H 0.182 0.818 41 H 0.154 0.846 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.573 2.966 -11.651 14.209 hybrid contribution -0.622 -0.551 1.050 1.339 sum 6.950 2.415 -10.601 12.904 Atomic orbital electron populations 1.21796 0.95734 1.02238 1.01345 1.22071 0.96973 0.93949 1.04520 1.19545 0.94353 0.89647 0.79418 1.22340 0.91561 1.03919 1.04588 1.87998 1.74921 1.54393 1.13861 1.23147 1.00885 0.99412 0.84458 1.25784 0.97235 0.88376 0.98210 1.74616 1.18980 1.15928 1.01926 1.85667 1.58207 1.15991 1.38639 1.26657 0.90625 0.89429 0.90207 1.16814 1.13937 0.88878 0.95819 1.21068 0.93775 0.89672 0.98975 1.21175 1.05399 0.97988 0.96459 1.21538 0.91188 0.97455 0.94545 1.21306 1.09258 0.92297 1.03410 1.19883 0.90302 0.88442 0.92060 1.83983 1.63251 1.30788 1.32255 1.22049 1.39621 0.97688 0.90015 0.86783 1.26658 0.97098 0.93453 1.04382 1.70249 1.43603 1.00082 1.39798 0.84524 0.77528 0.80015 0.74131 1.16578 1.19713 1.19680 1.72022 1.24174 1.15241 1.11433 0.92270 0.90965 0.94986 0.86749 0.91131 0.91537 0.87270 0.91545 0.91610 0.92153 0.88086 0.83852 0.81602 0.81848 0.84582 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.47 71.98 0.68 -4.05 16 2 C -0.14 -3.68 4.31 30.60 0.13 -3.55 16 3 C 0.21 6.50 0.79 -11.54 -0.01 6.49 16 4 C -0.17 -4.02 8.23 71.98 0.59 -3.42 16 5 O -0.39 -11.65 9.66 -148.98 -1.44 -13.09 16 6 C 0.02 0.29 10.21 113.37 1.16 1.45 16 7 C 0.18 7.44 6.30 138.53 0.87 8.32 16 8 N -0.40 -19.37 9.44 -58.49 -0.55 -19.92 16 9 O 0.07 3.71 10.01 86.91 0.87 4.58 16 10 C 0.24 11.77 7.96 87.22 0.69 12.46 16 11 C -0.15 -6.66 5.89 -19.99 -0.12 -6.78 16 12 C -0.02 -0.53 9.70 22.52 0.22 -0.31 16 13 C -0.19 -5.23 10.03 22.26 0.22 -5.01 16 14 C -0.03 -0.82 10.03 22.30 0.22 -0.60 16 15 C -0.24 -9.49 9.16 22.36 0.20 -9.28 16 16 C 0.15 7.15 6.66 22.89 0.15 7.31 16 17 O -0.20 -11.62 8.21 -2.88 -0.02 -11.64 16 18 C -0.42 -23.16 9.49 67.93 0.64 -22.52 16 19 H 0.11 5.59 5.21 -2.91 -0.02 5.57 16 20 C -0.02 -0.87 5.49 84.85 0.47 -0.40 16 21 N -0.90 -54.87 13.67 21.62 0.30 -54.58 16 22 Si 1.02 41.35 29.55 68.60 2.03 43.37 16 23 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 26 N -0.49 -21.59 11.26 -302.66 -3.41 -25.00 16 27 H 0.06 1.72 7.68 -2.39 -0.02 1.70 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 1.26 5.69 -2.39 -0.01 1.25 16 30 H 0.11 2.09 6.54 -2.39 -0.02 2.08 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.11 1.75 6.55 -2.39 -0.02 1.73 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 0.91 6.42 -2.39 -0.02 0.89 16 36 H 0.06 0.89 6.42 -2.39 -0.02 0.88 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.14 4.45 7.88 -2.91 -0.02 4.43 16 39 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.14 5.21 5.64 -2.91 -0.02 5.19 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.17 350.00 4.96 -71.21 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 1.06 Total: 24.97 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 6.14 Total: -19.90 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.67 Total: -99.50 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.59 Total: -20.15 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -76.17 4.96 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290586285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.530 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds