Wall clock time and date at job start Tue Mar 31 2020 13:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38189 * 119.96295 * 2 1 4 4 C 1.38141 * 120.13688 * 180.27683 * 3 2 1 5 5 C 1.38947 * 120.06666 * 359.49555 * 4 3 2 6 6 N 1.39924 * 120.03383 * 180.23144 * 5 4 3 7 7 C 1.34777 * 119.99872 * 144.90530 * 6 5 4 8 8 O 1.21286 * 120.00201 * 4.61308 * 7 6 5 9 9 C 1.50704 * 119.99836 * 184.62259 * 7 6 5 10 10 C 1.52996 * 109.47031 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99557 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00383 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 89.99398 * 15 13 11 17 17 H 1.48496 * 109.46884 * 209.99728 * 15 13 11 18 18 H 1.48501 * 109.47056 * 329.99824 * 15 13 11 19 19 C 1.38728 * 119.92820 * 0.24809 * 5 4 3 20 20 C 1.38758 * 119.86415 * 0.02562 * 19 5 4 21 21 N 1.39953 * 120.03453 * 180.02562 * 20 19 5 22 22 C 1.47096 * 125.55397 * 269.72022 * 21 20 19 23 23 C 1.54091 * 103.77229 * 179.87192 * 22 21 20 24 24 O 1.45701 * 104.01376 * 0.37424 * 23 22 21 25 25 C 1.33788 * 109.46920 * 359.75452 * 24 23 22 26 26 O 1.21508 * 123.06548 * 179.97438 * 25 24 23 27 27 H 1.09006 * 109.46983 * 270.23452 * 1 2 3 28 28 H 1.09002 * 109.47044 * 30.22924 * 1 2 3 29 29 H 1.08994 * 109.47661 * 150.23357 * 1 2 3 30 30 H 1.07996 * 119.93142 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.96475 * 179.76319 * 4 3 2 32 32 H 0.96997 * 119.99700 * 324.90240 * 6 5 4 33 33 H 1.08998 * 109.46814 * 299.99304 * 9 7 6 34 34 H 1.09001 * 109.47029 * 59.99701 * 9 7 6 35 35 H 1.09009 * 109.47162 * 299.99651 * 10 9 7 36 36 H 1.08994 * 109.47476 * 59.99277 * 10 9 7 37 37 H 0.97001 * 120.00048 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.06576 * 179.97438 * 19 5 4 39 39 H 1.09002 * 110.56768 * 298.56901 * 22 21 20 40 40 H 1.08995 * 110.56357 * 61.42839 * 22 21 20 41 41 H 1.08998 * 110.73136 * 241.63521 * 23 22 21 42 42 H 1.09004 * 110.43160 * 118.96370 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5785 1.2014 -0.0058 5 6 4.2783 0.0010 -0.0010 6 7 5.6776 0.0061 -0.0020 7 6 6.3553 -0.9435 0.6728 8 8 5.7555 -1.8500 1.2109 9 6 7.8585 -0.8789 0.7588 10 6 8.3741 -2.0660 1.5748 11 6 9.8773 -2.0018 1.6603 12 1 10.4115 -1.1952 1.1802 13 6 10.5707 -2.9727 2.3513 14 7 11.8825 -2.9169 2.4255 15 14 9.6468 -4.3682 3.1811 16 1 9.5014 -5.4998 2.2305 17 1 10.4025 -4.8200 4.3768 18 1 8.3019 -3.8940 3.5954 19 6 3.5883 -1.2024 0.0043 20 6 2.2007 -1.2033 0.0044 21 7 1.5009 -2.4153 0.0103 22 6 1.0682 -3.1589 -1.1828 23 6 0.3581 -4.3984 -0.6049 24 8 0.4560 -4.2205 0.8379 25 6 1.1109 -3.0845 1.1037 26 8 1.3314 -2.6952 2.2334 27 1 -0.3633 0.0042 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6554 2.1315 0.0004 31 1 4.1151 2.1386 -0.0096 32 1 6.1597 0.6931 -0.4883 33 1 8.2818 -0.9164 -0.2450 34 1 8.1551 0.0511 1.2437 35 1 7.9508 -2.0281 2.5786 36 1 8.0775 -2.9962 1.0903 37 1 12.3704 -3.6002 2.9113 38 1 4.1300 -2.1368 0.0076 39 1 0.3766 -2.5612 -1.7766 40 1 1.9290 -3.4574 -1.7810 41 1 0.8659 -5.3124 -0.9126 42 1 -0.6860 -4.4189 -0.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291832625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:24 Heat of formation + Delta-G solvation = -73.238876 kcal Electronic energy + Delta-G solvation = -26286.207043 eV Core-core repulsion = 22424.852441 eV Total energy + Delta-G solvation = -3861.354602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99154 -40.42204 -38.80887 -37.28825 -35.96059 -34.59314 -33.57852 -31.96431 -31.10468 -31.08337 -29.36458 -27.20247 -25.61295 -24.28568 -23.72989 -22.41919 -21.48885 -20.63080 -19.83811 -18.49293 -17.70857 -17.29227 -17.08948 -16.42865 -16.19857 -15.68913 -15.58101 -15.06845 -14.83931 -14.48261 -14.42956 -14.12929 -13.84828 -13.81746 -13.46256 -13.36037 -12.93760 -12.77138 -12.60965 -12.56168 -12.20023 -11.93534 -11.67498 -11.46148 -11.00422 -10.96478 -10.83461 -10.24432 -10.17993 -10.09404 -9.81145 -9.52684 -9.28123 -9.22317 -9.00220 -8.53375 -8.10051 -6.05643 -4.05009 0.94154 1.18506 2.12531 2.55234 2.84963 3.12553 3.22307 3.37001 3.44295 3.52254 3.56088 3.76530 4.24692 4.49290 4.60322 4.63117 4.72574 4.80778 4.89780 5.02771 5.06334 5.17502 5.19738 5.25649 5.29881 5.36704 5.48696 5.63904 5.71992 5.94575 5.98132 6.05672 6.12896 6.20264 6.36060 6.53658 6.59644 6.92134 7.06355 7.30083 7.37696 7.50074 7.74627 7.88515 8.37368 8.49682 8.96527 9.57252 11.06992 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.003346 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.813539 B = 8365.943667 C = 9731.153634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.096 4.096 3 C -0.095 4.095 4 C -0.135 4.135 5 C 0.159 3.841 6 N -0.684 5.684 7 C 0.508 3.492 8 O -0.515 6.515 9 C -0.120 4.120 10 C 0.001 3.999 11 C -0.526 4.526 12 H 0.073 0.927 13 C 0.070 3.930 14 N -0.902 5.902 15 Si 0.876 3.124 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.261 1.261 19 C -0.107 4.107 20 C 0.169 3.831 21 N -0.585 5.585 22 C 0.067 3.933 23 C 0.042 3.958 24 O -0.325 6.325 25 C 0.646 3.354 26 O -0.502 6.502 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.412 0.588 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.066 6.388 -13.921 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.155 4.155 5 C 0.063 3.937 6 N -0.330 5.330 7 C 0.297 3.703 8 O -0.388 6.388 9 C -0.159 4.159 10 C -0.037 4.037 11 C -0.564 4.564 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.703 3.297 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.185 1.185 19 C -0.128 4.128 20 C 0.080 3.920 21 N -0.330 5.330 22 C -0.056 4.056 23 C -0.033 4.033 24 O -0.235 6.235 25 C 0.400 3.600 26 O -0.384 6.384 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.163 0.837 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.242 5.607 -12.640 29.662 hybrid contribution 0.022 -0.438 0.007 0.439 sum -26.220 5.169 -12.633 29.560 Atomic orbital electron populations 1.20688 0.90925 1.02275 1.02575 1.20009 0.96393 0.92053 1.01399 1.20659 0.93276 0.97032 1.00424 1.21026 0.94392 0.96770 1.03342 1.17598 0.83629 0.93091 0.99362 1.43870 1.03833 1.32609 1.52700 1.21888 0.91853 0.80396 0.76117 1.90697 1.70463 1.33271 1.44405 1.21708 0.86799 1.03856 1.03572 1.19393 0.96609 0.92292 0.95445 1.21069 0.89388 1.11661 1.34302 0.90858 1.24957 0.94698 0.97802 0.95663 1.69906 1.06347 1.35205 1.42640 0.86819 0.80816 0.82681 0.79405 1.20228 1.21329 1.18490 1.21464 0.92686 0.99138 0.99539 1.16575 0.89099 0.82085 1.04279 1.44977 1.58901 1.22792 1.06287 1.22899 1.00938 0.92643 0.89088 1.24313 1.03227 0.99040 0.76767 1.87326 1.71323 1.39175 1.25671 1.18451 0.77247 0.78978 0.85306 1.91102 1.58443 1.68263 1.20622 0.91069 0.91257 0.92131 0.85020 0.85060 0.75191 0.89169 0.89071 0.95664 0.96230 0.92653 0.83706 0.88744 0.88647 0.87324 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.76 36.00 0.35 -0.56 16 2 C -0.10 -1.06 5.90 -104.40 -0.62 -1.67 16 3 C -0.09 -0.91 9.69 -39.64 -0.38 -1.30 16 4 C -0.13 -1.40 9.96 -39.35 -0.39 -1.79 16 5 C 0.16 2.13 6.30 -83.72 -0.53 1.60 16 6 N -0.68 -9.00 5.34 -9.88 -0.05 -9.05 16 7 C 0.51 9.04 7.67 -10.98 -0.08 8.95 16 8 O -0.51 -11.38 13.42 5.55 0.07 -11.30 16 9 C -0.12 -2.22 5.64 -27.88 -0.16 -2.38 16 10 C 0.00 0.01 3.33 -27.89 -0.09 -0.08 16 11 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 12 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 15 Si 0.88 22.80 27.47 -169.99 -4.67 18.14 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 19 C -0.11 -1.61 8.61 -39.21 -0.34 -1.95 16 20 C 0.17 2.24 5.44 -83.71 -0.46 1.78 16 21 N -0.58 -7.07 1.99 -118.29 -0.24 -7.31 16 22 C 0.07 0.44 7.36 -3.15 -0.02 0.41 16 23 C 0.04 0.24 8.23 37.73 0.31 0.55 16 24 O -0.32 -3.98 11.09 -37.87 -0.42 -4.40 16 25 C 0.65 9.86 8.81 53.71 0.47 10.34 16 26 O -0.50 -10.17 17.66 -19.11 -0.34 -10.50 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.06 0.46 6.65 -51.93 -0.35 0.12 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.41 3.81 8.82 -40.82 -0.36 3.45 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.03 0.66 7.16 -51.92 -0.37 0.29 16 36 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.15 2.55 6.22 -52.49 -0.33 2.23 16 39 H 0.09 0.38 7.58 -51.93 -0.39 -0.02 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 356.83 15.07 5.38 5.38 Total: -1.00 -39.50 356.83 -7.43 -46.93 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.58 Total: -1.32 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.36 Total: 0.62 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.48 Total: -43.53 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.68 Total: -26.21 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.50 -7.43 -46.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291832625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.310 kcal (2) G-P(sol) polarization free energy of solvation -39.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds