Wall clock time and date at job start Tue Mar 31 2020 13:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38189 * 119.96295 * 2 1 4 4 C 1.38141 * 120.13688 * 180.27683 * 3 2 1 5 5 C 1.38947 * 120.06666 * 359.49555 * 4 3 2 6 6 N 1.39924 * 120.03383 * 180.23144 * 5 4 3 7 7 C 1.34777 * 119.99872 * 144.90530 * 6 5 4 8 8 O 1.21286 * 120.00201 * 4.61308 * 7 6 5 9 9 C 1.50704 * 119.99836 * 184.62259 * 7 6 5 10 10 C 1.52996 * 109.47031 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.07999 * 119.99557 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00383 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 89.99398 * 15 13 11 17 17 H 1.48496 * 109.46884 * 209.99728 * 15 13 11 18 18 H 1.48501 * 109.47056 * 329.99824 * 15 13 11 19 19 C 1.38728 * 119.92820 * 0.24809 * 5 4 3 20 20 C 1.38758 * 119.86415 * 0.02562 * 19 5 4 21 21 N 1.39953 * 120.03453 * 180.02562 * 20 19 5 22 22 C 1.47096 * 125.55397 * 269.72022 * 21 20 19 23 23 C 1.54091 * 103.77229 * 179.87192 * 22 21 20 24 24 O 1.45701 * 104.01376 * 0.37424 * 23 22 21 25 25 C 1.33788 * 109.46920 * 359.75452 * 24 23 22 26 26 O 1.21508 * 123.06548 * 179.97438 * 25 24 23 27 27 H 1.09006 * 109.46983 * 270.23452 * 1 2 3 28 28 H 1.09002 * 109.47044 * 30.22924 * 1 2 3 29 29 H 1.08994 * 109.47661 * 150.23357 * 1 2 3 30 30 H 1.07996 * 119.93142 * 0.02562 * 3 2 1 31 31 H 1.07993 * 119.96475 * 179.76319 * 4 3 2 32 32 H 0.96997 * 119.99700 * 324.90240 * 6 5 4 33 33 H 1.08998 * 109.46814 * 299.99304 * 9 7 6 34 34 H 1.09001 * 109.47029 * 59.99701 * 9 7 6 35 35 H 1.09009 * 109.47162 * 299.99651 * 10 9 7 36 36 H 1.08994 * 109.47476 * 59.99277 * 10 9 7 37 37 H 0.97001 * 120.00048 * 180.02562 * 14 13 11 38 38 H 1.08001 * 120.06576 * 179.97438 * 19 5 4 39 39 H 1.09002 * 110.56768 * 298.56901 * 22 21 20 40 40 H 1.08995 * 110.56357 * 61.42839 * 22 21 20 41 41 H 1.08998 * 110.73136 * 241.63521 * 23 22 21 42 42 H 1.09004 * 110.43160 * 118.96370 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5785 1.2014 -0.0058 5 6 4.2783 0.0010 -0.0010 6 7 5.6776 0.0061 -0.0020 7 6 6.3553 -0.9435 0.6728 8 8 5.7555 -1.8500 1.2109 9 6 7.8585 -0.8789 0.7588 10 6 8.3741 -2.0660 1.5748 11 6 9.8773 -2.0018 1.6603 12 1 10.4115 -1.1952 1.1802 13 6 10.5707 -2.9727 2.3513 14 7 11.8825 -2.9169 2.4255 15 14 9.6468 -4.3682 3.1811 16 1 9.5014 -5.4998 2.2305 17 1 10.4025 -4.8200 4.3768 18 1 8.3019 -3.8940 3.5954 19 6 3.5883 -1.2024 0.0043 20 6 2.2007 -1.2033 0.0044 21 7 1.5009 -2.4153 0.0103 22 6 1.0682 -3.1589 -1.1828 23 6 0.3581 -4.3984 -0.6049 24 8 0.4560 -4.2205 0.8379 25 6 1.1109 -3.0845 1.1037 26 8 1.3314 -2.6952 2.2334 27 1 -0.3633 0.0042 1.0277 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3634 -0.8920 -0.5102 30 1 1.6554 2.1315 0.0004 31 1 4.1151 2.1386 -0.0096 32 1 6.1597 0.6931 -0.4883 33 1 8.2818 -0.9164 -0.2450 34 1 8.1551 0.0511 1.2437 35 1 7.9508 -2.0281 2.5786 36 1 8.0775 -2.9962 1.0903 37 1 12.3704 -3.6002 2.9113 38 1 4.1300 -2.1368 0.0076 39 1 0.3766 -2.5612 -1.7766 40 1 1.9290 -3.4574 -1.7810 41 1 0.8659 -5.3124 -0.9126 42 1 -0.6860 -4.4189 -0.9174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291832625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:24 Heat of formation + Delta-G solvation = -101.050726 kcal Electronic energy + Delta-G solvation = -26287.413055 eV Core-core repulsion = 22424.852441 eV Total energy + Delta-G solvation = -3862.560614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90119 -41.58332 -39.91069 -38.44827 -36.99488 -35.69088 -35.53738 -33.54729 -32.46875 -31.87317 -30.15397 -28.64325 -26.95394 -25.12233 -24.51679 -23.72769 -22.80032 -21.70897 -21.28619 -19.52621 -19.22286 -18.49406 -18.03512 -17.78082 -17.35141 -16.92235 -16.48327 -16.28772 -16.10548 -16.00572 -15.42285 -15.21790 -15.02184 -14.73230 -14.65644 -14.58421 -14.37355 -14.11465 -13.48748 -13.38395 -13.33500 -13.13745 -12.95274 -12.78337 -12.47800 -12.16488 -12.05646 -12.00938 -11.83331 -11.76975 -11.44431 -11.26551 -10.86341 -10.81421 -10.23925 -9.92597 -9.08727 -8.35354 -6.37539 0.03974 0.24621 1.23881 1.27614 1.31106 1.45716 1.45948 1.53232 2.03602 2.30528 2.48773 2.59976 3.00513 3.24289 3.76172 3.84652 3.88413 3.92916 4.00459 4.10746 4.24385 4.32370 4.40125 4.43429 4.45961 4.59292 4.61303 4.67012 4.73088 4.76668 4.94333 5.04518 5.20762 5.25631 5.28655 5.34086 5.38582 5.48812 5.52888 5.57643 5.96786 6.15176 6.19460 6.41342 6.68910 6.82285 7.13873 7.27975 8.80182 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.003346 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.813539 B = 8365.943667 C = 9731.153634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.087 4.087 4 C -0.121 4.121 5 C 0.133 3.867 6 N -0.659 5.659 7 C 0.512 3.488 8 O -0.567 6.567 9 C -0.111 4.111 10 C 0.003 3.997 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.018 3.982 14 N -0.940 5.940 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.269 1.269 19 C -0.135 4.135 20 C 0.148 3.852 21 N -0.581 5.581 22 C 0.062 3.938 23 C 0.037 3.963 24 O -0.342 6.342 25 C 0.641 3.359 26 O -0.571 6.571 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.432 0.568 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.005 0.995 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.591 8.142 -16.073 33.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.039 3.961 6 N -0.307 5.307 7 C 0.302 3.698 8 O -0.445 6.445 9 C -0.151 4.151 10 C -0.035 4.035 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.581 5.581 15 Si 0.757 3.243 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.194 1.194 19 C -0.156 4.156 20 C 0.059 3.941 21 N -0.325 5.325 22 C -0.059 4.059 23 C -0.036 4.036 24 O -0.252 6.252 25 C 0.396 3.604 26 O -0.458 6.458 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.184 0.816 32 H 0.272 0.728 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.023 0.977 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.786 7.388 -14.895 33.243 hybrid contribution 0.738 -0.936 0.538 1.308 sum -28.048 6.452 -14.357 32.163 Atomic orbital electron populations 1.20750 0.88956 1.04281 1.02269 1.20406 0.97928 0.91599 0.99907 1.21175 0.93119 0.98032 0.98269 1.21392 0.94906 0.96659 1.01125 1.17810 0.83279 0.93823 1.01237 1.43443 1.04163 1.31640 1.51443 1.21585 0.91456 0.80616 0.76162 1.90700 1.71196 1.35568 1.46999 1.21513 0.87723 1.01891 1.03957 1.19240 0.94242 0.94609 0.95416 1.21395 0.91234 1.10682 1.33120 0.92529 1.25712 0.95396 1.00263 0.96637 1.70003 1.07623 1.36440 1.44018 0.85931 0.79129 0.80272 0.78964 1.19252 1.20200 1.19423 1.21333 0.93729 0.98522 1.02057 1.16828 0.88755 0.83453 1.05108 1.45096 1.57651 1.22556 1.07156 1.23313 1.02107 0.92851 0.87584 1.24870 1.05982 0.99516 0.73236 1.87273 1.70546 1.37737 1.29673 1.18697 0.77044 0.79516 0.85160 1.91023 1.61266 1.70216 1.23345 0.92387 0.88045 0.91408 0.81014 0.81615 0.72760 0.86847 0.87137 0.97663 0.97418 0.92311 0.87463 0.85245 0.87828 0.85416 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.76 71.23 0.70 -0.78 16 2 C -0.10 -1.90 5.90 -19.72 -0.12 -2.02 16 3 C -0.09 -1.35 9.69 22.23 0.22 -1.13 16 4 C -0.12 -2.11 9.96 22.42 0.22 -1.89 16 5 C 0.13 3.44 6.30 38.14 0.24 3.68 16 6 N -0.66 -16.59 5.34 -303.55 -1.62 -18.21 16 7 C 0.51 18.33 7.67 87.66 0.67 19.00 16 8 O -0.57 -26.23 13.42 -3.05 -0.04 -26.27 16 9 C -0.11 -4.09 5.64 29.85 0.17 -3.92 16 10 C 0.00 0.15 3.33 29.85 0.10 0.25 16 11 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 12 H 0.06 3.38 7.99 -2.91 -0.02 3.36 16 13 C 0.02 1.08 5.47 84.65 0.46 1.54 16 14 N -0.94 -59.04 13.96 21.45 0.30 -58.74 16 15 Si 0.93 48.00 27.47 68.60 1.88 49.88 16 16 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 17 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.27 -14.17 6.54 99.48 0.65 -13.52 16 19 C -0.13 -4.18 8.61 22.51 0.19 -3.99 16 20 C 0.15 3.89 5.44 38.13 0.21 4.10 16 21 N -0.58 -14.04 1.99 -759.88 -1.52 -15.56 16 22 C 0.06 0.69 7.36 86.64 0.64 1.33 16 23 C 0.04 0.36 8.23 72.35 0.60 0.95 16 24 O -0.34 -8.45 11.09 -47.47 -0.53 -8.98 16 25 C 0.64 20.38 8.81 129.91 1.14 21.53 16 26 O -0.57 -24.74 17.66 19.66 0.35 -24.40 16 27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.10 0.76 8.09 -2.39 -0.02 0.74 16 29 H 0.07 0.84 6.65 -2.39 -0.02 0.82 16 30 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.43 6.91 8.82 -92.71 -0.82 6.09 16 33 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 35 H 0.00 0.27 7.16 -2.38 -0.02 0.25 16 36 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 37 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 38 H 0.11 4.11 6.22 -2.91 -0.02 4.09 16 39 H 0.13 0.56 7.58 -2.39 -0.02 0.54 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.15 0.26 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -93.07 356.83 4.70 -88.37 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.18 Total: 5.32 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.69 Total: 8.57 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.84 Total: -92.50 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -0.22 Total: -59.64 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.88 Total: 49.88 kcal Total: -93.07 4.70 -88.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291832625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.679 kcal (2) G-P(sol) polarization free energy of solvation -93.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds