Wall clock time and date at job start Tue Mar 31 2020 13:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00341 * 2 1 4 4 N 1.46500 * 109.47192 * 127.23807 * 3 2 1 5 5 C 1.46498 * 120.00192 * 280.42819 * 4 3 2 6 6 C 1.50696 * 109.46848 * 270.00215 * 5 4 3 7 7 H 1.08000 * 120.00694 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99819 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99782 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47107 * 89.99854 * 10 8 6 12 12 H 1.48503 * 109.47086 * 210.00104 * 10 8 6 13 13 H 1.48504 * 109.46817 * 329.99729 * 10 8 6 14 14 C 1.34774 * 119.99820 * 100.42669 * 4 3 2 15 15 O 1.21553 * 120.00286 * 176.82524 * 14 4 3 16 16 C 1.47856 * 120.00198 * 356.83177 * 14 4 3 17 17 C 1.39591 * 120.14130 * 314.69716 * 16 14 4 18 18 C 1.37937 * 119.85128 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14347 * 0.25286 * 18 17 16 20 20 C 1.50701 * 119.85138 * 179.72178 * 19 18 17 21 21 C 1.52999 * 109.47278 * 256.41680 * 20 19 18 22 22 C 1.38340 * 120.29067 * 359.49137 * 19 18 17 23 23 N 1.48017 * 119.92190 * 180.25407 * 22 19 18 24 24 O 1.21803 * 119.99690 * 183.43701 * 23 22 19 25 25 O 1.21793 * 120.00289 * 3.44503 * 23 22 19 26 26 C 1.37974 * 120.14573 * 0.50649 * 22 19 18 27 27 H 1.08003 * 119.99568 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00135 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.99865 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47072 * 7.23962 * 3 2 1 31 31 H 1.09003 * 109.46811 * 247.23903 * 3 2 1 32 32 H 1.09004 * 109.46974 * 29.99803 * 5 4 3 33 33 H 1.08998 * 109.47157 * 150.00112 * 5 4 3 34 34 H 0.97006 * 119.99535 * 179.97438 * 9 8 6 35 35 H 1.08002 * 120.07411 * 359.95755 * 17 16 14 36 36 H 1.07993 * 119.92573 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47171 * 16.41701 * 20 19 18 38 38 H 1.09002 * 109.46758 * 136.41629 * 20 19 18 39 39 H 1.09005 * 109.47036 * 300.00104 * 21 20 19 40 40 H 1.09002 * 109.47267 * 60.00261 * 21 20 19 41 41 H 1.09002 * 109.47044 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.07447 * 179.77077 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0315 1.3100 1.0996 5 6 2.5872 1.5986 2.4654 6 6 2.6722 3.0817 2.7185 7 1 3.0218 3.7433 1.9397 8 6 2.3026 3.5942 3.9439 9 7 2.3772 4.8886 4.1649 10 14 1.6972 2.4501 5.2908 11 1 2.8501 1.9937 6.1078 12 1 0.7316 3.1727 6.1572 13 1 1.0285 1.2743 4.6778 14 6 4.3309 1.0491 0.8547 15 8 5.1435 1.1098 1.7566 16 6 4.7680 0.6891 -0.5111 17 6 4.0415 -0.2403 -1.2575 18 6 4.4544 -0.5714 -2.5313 19 6 5.5890 0.0118 -3.0676 20 6 6.0377 -0.3594 -4.4575 21 6 7.2346 -1.3085 -4.3707 22 6 6.3105 0.9375 -2.3352 23 7 7.5196 1.5604 -2.9190 24 8 8.1911 2.3280 -2.2531 25 8 7.8431 1.3055 -4.0652 26 6 5.9083 1.2775 -1.0599 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3624 2.1295 0.1295 31 1 2.5895 1.4208 -0.9477 32 1 1.5562 1.2673 2.5897 33 1 3.2260 1.0718 3.1743 34 1 2.1168 5.2492 5.0270 35 1 3.1583 -0.6994 -0.8383 36 1 3.8935 -1.2906 -3.1096 37 1 5.2203 -0.8526 -4.9836 38 1 6.3269 0.5415 -4.9986 39 1 8.0520 -0.8153 -3.8446 40 1 6.9454 -2.2095 -3.8296 41 1 7.5593 -1.5766 -5.3761 42 1 6.4745 1.9975 -0.4878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292482068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:17 Heat of formation + Delta-G solvation = 23.961692 kcal Electronic energy + Delta-G solvation = -26731.695188 eV Core-core repulsion = 22874.555519 eV Total energy + Delta-G solvation = -3857.139669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36569 -40.45285 -38.68138 -36.78029 -36.15535 -34.40172 -33.33811 -32.33812 -32.12109 -30.43108 -28.39256 -26.64436 -25.95988 -24.77733 -22.93119 -22.65821 -21.74806 -20.47609 -19.87558 -18.71134 -18.09142 -17.61627 -17.02073 -16.87625 -16.44357 -16.01264 -15.70640 -14.83879 -14.54190 -14.48291 -14.23341 -14.07780 -13.84450 -13.43691 -13.19709 -12.85972 -12.41891 -12.30287 -12.14183 -11.96554 -11.86970 -11.71975 -11.59091 -11.40158 -11.37851 -11.06311 -10.98757 -10.64588 -10.61376 -10.28342 -9.86534 -9.70503 -9.50407 -9.47023 -9.20809 -8.66973 -8.01232 -6.16421 -4.16616 -0.27173 0.52826 1.21514 1.31320 2.13848 2.73850 3.21322 3.24133 3.28762 3.31007 3.56571 4.06801 4.10221 4.31769 4.38420 4.55198 4.61848 4.83021 4.90515 4.96066 5.00522 5.06703 5.15690 5.23485 5.28808 5.37403 5.43587 5.61139 5.62387 5.76062 5.78351 5.84629 5.92490 5.94942 5.99215 6.42099 6.49727 6.52255 6.62913 6.77253 7.08953 7.49262 7.62482 7.91591 8.33905 8.60331 8.86253 9.42321 10.96698 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003709 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.924574 B = 7546.663208 C = 8643.796046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.183 4.183 3 C 0.128 3.872 4 N -0.577 5.577 5 C 0.218 3.782 6 C -0.534 4.534 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.549 3.451 15 O -0.518 6.518 16 C -0.117 4.117 17 C -0.048 4.048 18 C -0.127 4.127 19 C -0.004 4.004 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.051 4.051 23 N 0.034 4.966 24 O -0.163 6.163 25 O -0.157 6.157 26 C -0.004 4.004 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 -14.420 -17.598 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.202 4.202 3 C 0.005 3.995 4 N -0.306 5.306 5 C 0.098 3.902 6 C -0.572 4.572 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.531 5.531 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.190 1.190 14 C 0.334 3.666 15 O -0.395 6.395 16 C -0.121 4.121 17 C -0.066 4.066 18 C -0.145 4.145 19 C -0.005 4.005 20 C -0.139 4.139 21 C -0.198 4.198 22 C -0.135 4.135 23 N 0.551 4.449 24 O -0.377 6.377 25 O -0.371 6.371 26 C -0.024 4.024 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.374 -14.501 -16.648 22.081 hybrid contribution -0.106 -0.234 0.737 0.781 sum -0.480 -14.735 -15.911 21.691 Atomic orbital electron populations 1.23915 0.95733 1.02235 0.98731 1.23440 0.96515 0.98568 1.01637 1.20799 0.92590 0.95832 0.90324 1.47852 1.05654 1.66914 1.10217 1.19734 0.95109 0.97807 0.77511 1.21269 1.45116 0.90364 1.00449 0.90636 1.24842 0.94958 0.94991 0.98019 1.69893 1.47734 1.11562 1.23954 0.86877 0.79277 0.81165 0.82548 1.19808 1.20939 1.19037 1.17937 0.83190 0.78788 0.86692 1.90827 1.51777 1.51547 1.45305 1.20166 0.95863 0.99593 0.96508 1.22344 0.98022 0.93149 0.93128 1.21071 0.96135 1.01434 0.95905 1.20051 0.92675 0.91023 0.96767 1.21033 0.99262 1.02555 0.91072 1.21698 0.97254 0.98101 1.02761 1.20772 0.91633 1.04464 0.96620 1.43500 1.01563 0.99377 1.00487 1.94596 1.51178 1.31114 1.60840 1.94428 1.74182 1.65892 1.02635 1.21066 0.93745 0.96260 0.91343 0.87883 0.88373 0.87276 0.88862 0.90104 0.94688 0.94395 0.92421 0.82521 0.83204 0.90186 0.87576 0.92347 0.92916 0.91290 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 14.32 29.02 0.42 -1.30 16 2 C -0.18 -2.06 8.54 -36.03 -0.31 -2.37 16 3 C 0.13 1.82 5.33 -5.19 -0.03 1.79 16 4 N -0.58 -11.00 2.46 -177.55 -0.44 -11.43 16 5 C 0.22 5.05 4.18 -5.20 -0.02 5.03 16 6 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 10 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 14 C 0.55 10.63 7.25 -12.33 -0.09 10.54 16 15 O -0.52 -12.37 16.60 5.32 0.09 -12.28 16 16 C -0.12 -1.72 4.87 -104.97 -0.51 -2.23 16 17 C -0.05 -0.51 7.60 -39.19 -0.30 -0.81 16 18 C -0.13 -1.08 9.65 -39.64 -0.38 -1.46 16 19 C 0.00 -0.04 5.16 -104.53 -0.54 -0.58 16 20 C -0.10 -0.84 5.35 -27.88 -0.15 -0.99 16 21 C -0.14 -1.15 9.33 37.16 0.35 -0.81 16 22 C -0.05 -0.68 6.79 -80.01 -0.54 -1.22 16 23 N 0.03 0.49 4.38 33.93 0.15 0.64 16 24 O -0.16 -2.65 18.45 -29.46 -0.54 -3.20 16 25 O -0.16 -2.11 13.40 -29.46 -0.39 -2.51 16 26 C 0.00 -0.06 9.20 -39.19 -0.36 -0.42 16 27 H 0.10 1.06 7.85 -52.48 -0.41 0.64 16 28 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 29 H 0.11 1.06 6.14 -52.48 -0.32 0.74 16 30 H 0.09 1.42 7.80 -51.93 -0.41 1.01 16 31 H 0.08 0.99 5.54 -51.93 -0.29 0.70 16 32 H 0.04 0.77 7.11 -51.93 -0.37 0.40 16 33 H 0.04 0.94 6.89 -51.93 -0.36 0.58 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.16 1.42 3.91 -52.49 -0.21 1.21 16 36 H 0.15 0.75 8.00 -52.49 -0.42 0.33 16 37 H 0.08 0.46 7.96 -51.93 -0.41 0.04 16 38 H 0.11 0.97 6.01 -51.93 -0.31 0.65 16 39 H 0.06 0.60 6.39 -51.93 -0.33 0.27 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.16 2.59 7.61 -52.49 -0.40 2.19 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -33.47 352.36 -7.73 -41.19 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.09 Total: 0.21 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.91 Total: -7.94 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.49 Total: -37.05 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.85 Total: -17.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.47 -7.73 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292482068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.154 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds