Wall clock time and date at job start Tue Mar 31 2020 13:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00341 * 2 1 4 4 N 1.46500 * 109.47192 * 127.23807 * 3 2 1 5 5 C 1.46498 * 120.00192 * 280.42819 * 4 3 2 6 6 C 1.50696 * 109.46848 * 270.00215 * 5 4 3 7 7 H 1.08000 * 120.00694 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99819 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99782 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99971 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47107 * 89.99854 * 10 8 6 12 12 H 1.48503 * 109.47086 * 210.00104 * 10 8 6 13 13 H 1.48504 * 109.46817 * 329.99729 * 10 8 6 14 14 C 1.34774 * 119.99820 * 100.42669 * 4 3 2 15 15 O 1.21553 * 120.00286 * 176.82524 * 14 4 3 16 16 C 1.47856 * 120.00198 * 356.83177 * 14 4 3 17 17 C 1.39591 * 120.14130 * 314.69716 * 16 14 4 18 18 C 1.37937 * 119.85128 * 179.97438 * 17 16 14 19 19 C 1.38385 * 120.14347 * 0.25286 * 18 17 16 20 20 C 1.50701 * 119.85138 * 179.72178 * 19 18 17 21 21 C 1.52999 * 109.47278 * 256.41680 * 20 19 18 22 22 C 1.38340 * 120.29067 * 359.49137 * 19 18 17 23 23 N 1.48017 * 119.92190 * 180.25407 * 22 19 18 24 24 O 1.21803 * 119.99690 * 183.43701 * 23 22 19 25 25 O 1.21793 * 120.00289 * 3.44503 * 23 22 19 26 26 C 1.37974 * 120.14573 * 0.50649 * 22 19 18 27 27 H 1.08003 * 119.99568 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00135 * 179.97438 * 1 2 3 29 29 H 1.08008 * 119.99865 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47072 * 7.23962 * 3 2 1 31 31 H 1.09003 * 109.46811 * 247.23903 * 3 2 1 32 32 H 1.09004 * 109.46974 * 29.99803 * 5 4 3 33 33 H 1.08998 * 109.47157 * 150.00112 * 5 4 3 34 34 H 0.97006 * 119.99535 * 179.97438 * 9 8 6 35 35 H 1.08002 * 120.07411 * 359.95755 * 17 16 14 36 36 H 1.07993 * 119.92573 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47171 * 16.41701 * 20 19 18 38 38 H 1.09002 * 109.46758 * 136.41629 * 20 19 18 39 39 H 1.09005 * 109.47036 * 300.00104 * 21 20 19 40 40 H 1.09002 * 109.47267 * 60.00261 * 21 20 19 41 41 H 1.09002 * 109.47044 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.07447 * 179.77077 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0315 1.3100 1.0996 5 6 2.5872 1.5986 2.4654 6 6 2.6722 3.0817 2.7185 7 1 3.0218 3.7433 1.9397 8 6 2.3026 3.5942 3.9439 9 7 2.3772 4.8886 4.1649 10 14 1.6972 2.4501 5.2908 11 1 2.8501 1.9937 6.1078 12 1 0.7316 3.1727 6.1572 13 1 1.0285 1.2743 4.6778 14 6 4.3309 1.0491 0.8547 15 8 5.1435 1.1098 1.7566 16 6 4.7680 0.6891 -0.5111 17 6 4.0415 -0.2403 -1.2575 18 6 4.4544 -0.5714 -2.5313 19 6 5.5890 0.0118 -3.0676 20 6 6.0377 -0.3594 -4.4575 21 6 7.2346 -1.3085 -4.3707 22 6 6.3105 0.9375 -2.3352 23 7 7.5196 1.5604 -2.9190 24 8 8.1911 2.3280 -2.2531 25 8 7.8431 1.3055 -4.0652 26 6 5.9083 1.2775 -1.0599 27 1 -0.5399 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3624 2.1295 0.1295 31 1 2.5895 1.4208 -0.9477 32 1 1.5562 1.2673 2.5897 33 1 3.2260 1.0718 3.1743 34 1 2.1168 5.2492 5.0270 35 1 3.1583 -0.6994 -0.8383 36 1 3.8935 -1.2906 -3.1096 37 1 5.2203 -0.8526 -4.9836 38 1 6.3269 0.5415 -4.9986 39 1 8.0520 -0.8153 -3.8446 40 1 6.9454 -2.2095 -3.8296 41 1 7.5593 -1.5766 -5.3761 42 1 6.4745 1.9975 -0.4878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292482068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:16 Heat of formation + Delta-G solvation = 3.387373 kcal Electronic energy + Delta-G solvation = -26732.587357 eV Core-core repulsion = 22874.555519 eV Total energy + Delta-G solvation = -3858.031838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.48088 -41.68992 -39.90979 -37.91084 -37.55504 -35.45442 -34.90702 -33.86869 -33.14734 -31.48552 -30.07395 -27.71503 -27.15545 -26.01524 -24.19850 -23.87976 -22.73434 -21.59194 -21.00057 -19.83708 -19.41253 -19.10689 -18.74659 -18.00656 -17.76777 -17.07308 -16.91997 -16.21459 -15.95426 -15.59444 -15.32205 -15.10568 -14.78185 -14.71887 -14.49690 -14.24053 -13.81482 -13.60389 -13.24015 -13.11896 -13.05650 -12.95416 -12.78353 -12.53360 -12.52068 -12.38215 -12.28450 -12.07024 -11.92592 -11.78582 -11.46479 -11.09556 -10.87081 -10.74865 -10.38040 -10.23613 -9.63334 -8.37573 -6.44191 -1.31578 -0.49626 0.18793 0.25587 1.26197 1.31553 1.35401 1.43387 1.47701 2.00761 2.27779 2.28518 2.96642 3.10505 3.21493 3.40697 3.59168 3.66067 3.90280 4.01604 4.10452 4.20157 4.28129 4.39213 4.40803 4.47502 4.69280 4.71867 4.77269 4.83521 4.85951 4.86621 5.00038 5.07565 5.10953 5.20367 5.30541 5.35925 5.41515 5.48139 5.69077 5.87758 6.15835 6.41492 6.47031 6.57578 7.03815 7.21736 8.79548 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003709 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.924574 B = 7546.663208 C = 8643.796046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.195 4.195 3 C 0.123 3.877 4 N -0.580 5.580 5 C 0.229 3.771 6 C -0.542 4.542 7 H 0.025 0.975 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.948 3.052 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.231 1.231 14 C 0.542 3.458 15 O -0.581 6.581 16 C -0.133 4.133 17 C -0.030 4.030 18 C -0.098 4.098 19 C 0.010 3.990 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.063 4.063 23 N 0.033 4.967 24 O -0.246 6.246 25 O -0.104 6.104 26 C -0.026 4.026 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.182 0.818 36 H 0.210 0.790 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -19.201 -20.452 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C 0.001 3.999 4 N -0.309 5.309 5 C 0.107 3.893 6 C -0.580 4.580 7 H 0.043 0.957 8 C -0.187 4.187 9 N -0.585 5.585 10 Si 0.770 3.230 11 H -0.203 1.203 12 H -0.200 1.200 13 H -0.154 1.154 14 C 0.330 3.670 15 O -0.462 6.462 16 C -0.137 4.137 17 C -0.048 4.048 18 C -0.116 4.116 19 C 0.008 3.992 20 C -0.139 4.139 21 C -0.200 4.200 22 C -0.147 4.147 23 N 0.548 4.452 24 O -0.440 6.440 25 O -0.336 6.336 26 C -0.046 4.046 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.199 0.801 36 H 0.227 0.773 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.424 -19.192 -19.408 27.509 hybrid contribution 0.813 1.231 1.346 1.997 sum -2.611 -17.961 -18.062 25.606 Atomic orbital electron populations 1.24158 0.95362 1.03354 0.96061 1.23277 0.96764 0.97354 1.03919 1.21056 0.91749 0.97697 0.89381 1.47893 1.06703 1.66247 1.10031 1.19371 0.95905 0.94129 0.79906 1.21529 1.44470 0.92550 0.99461 0.95701 1.25887 0.95114 0.96746 1.00939 1.70062 1.49423 1.14039 1.24960 0.85714 0.78775 0.79783 0.78702 1.20290 1.19962 1.15382 1.18670 0.82632 0.77498 0.88165 1.90775 1.53331 1.54320 1.47781 1.19720 0.97026 1.02277 0.94680 1.22608 0.97677 0.91024 0.93489 1.21677 0.94707 1.00472 0.94700 1.20591 0.92177 0.88900 0.97509 1.21188 1.00809 1.02558 0.89367 1.21727 0.96289 0.98222 1.03742 1.20867 0.91540 1.05817 0.96459 1.43720 1.01933 0.99183 1.00415 1.94627 1.53283 1.34385 1.61658 1.94367 1.73356 1.63669 1.02210 1.20793 0.94363 0.96954 0.92479 0.88535 0.85493 0.84835 0.90576 0.88196 0.92286 0.95994 0.92193 0.80139 0.77335 0.85721 0.88511 0.95312 0.91633 0.89389 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 14.32 67.78 0.97 -1.44 16 2 C -0.19 -3.60 8.54 25.65 0.22 -3.39 16 3 C 0.12 3.34 5.33 85.63 0.46 3.80 16 4 N -0.58 -22.55 2.46 -833.92 -2.05 -24.60 16 5 C 0.23 10.76 4.18 85.63 0.36 11.12 16 6 C -0.54 -31.73 9.94 25.60 0.25 -31.47 16 7 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 8 C 0.01 0.67 5.47 84.66 0.46 1.13 16 9 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 10 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.23 -9.25 6.54 99.48 0.65 -8.60 16 14 C 0.54 22.11 7.25 86.79 0.63 22.73 16 15 O -0.58 -30.05 16.60 -3.88 -0.06 -30.12 16 16 C -0.13 -3.94 4.87 -20.09 -0.10 -4.04 16 17 C -0.03 -0.53 7.60 22.53 0.17 -0.35 16 18 C -0.10 -1.08 9.65 22.23 0.21 -0.86 16 19 C 0.01 0.16 5.16 -19.80 -0.10 0.06 16 20 C -0.10 -1.15 5.35 29.85 0.16 -0.99 16 21 C -0.14 -1.74 9.33 71.98 0.67 -1.07 16 22 C -0.06 -1.67 6.79 36.34 0.25 -1.42 16 23 N 0.03 1.01 4.38 -46.55 -0.20 0.81 16 24 O -0.25 -8.99 18.45 18.88 0.35 -8.64 16 25 O -0.10 -2.73 13.40 18.89 0.25 -2.48 16 26 C -0.03 -0.82 9.20 22.53 0.21 -0.61 16 27 H 0.10 1.67 7.85 -2.91 -0.02 1.64 16 28 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.13 1.85 6.14 -2.91 -0.02 1.83 16 30 H 0.08 2.32 7.80 -2.39 -0.02 2.30 16 31 H 0.10 2.28 5.54 -2.39 -0.01 2.26 16 32 H 0.06 2.50 7.11 -2.39 -0.02 2.48 16 33 H 0.02 1.11 6.89 -2.39 -0.02 1.09 16 34 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 35 H 0.18 2.32 3.91 -2.91 -0.01 2.31 16 36 H 0.21 0.08 8.00 -2.91 -0.02 0.05 16 37 H 0.12 0.42 7.96 -2.38 -0.02 0.40 16 38 H 0.10 1.35 6.01 -2.39 -0.01 1.34 16 39 H 0.03 0.52 6.39 -2.38 -0.02 0.50 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.13 4.79 7.61 -2.91 -0.02 4.77 16 Total: -1.00 -84.15 352.36 6.29 -77.86 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.00 Total: 8.16 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 4.82 Total: -6.80 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.95 Total: -83.45 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: 0.54 Total: -41.23 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Total: -84.15 6.29 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292482068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.251 kcal (2) G-P(sol) polarization free energy of solvation -84.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds