Wall clock time and date at job start Tue Mar 31 2020 13:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47334 * 2 1 4 4 N 1.30618 * 125.42289 * 90.01826 * 3 2 1 5 5 C 1.33696 * 108.99866 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.27532 * 180.02562 * 5 4 3 7 7 C 1.36338 * 107.44812 * 0.02562 * 5 4 3 8 8 C 1.46725 * 126.64309 * 180.02562 * 7 5 4 9 9 O 1.21690 * 119.99839 * 353.83037 * 8 7 5 10 10 N 1.34776 * 120.00335 * 173.83390 * 8 7 5 11 11 C 1.46504 * 119.99658 * 4.24525 * 10 8 7 12 12 C 1.50696 * 109.47105 * 83.69231 * 11 10 8 13 13 H 1.07999 * 120.00392 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99884 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00118 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46745 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47247 * 120.00001 * 16 14 12 19 19 H 1.48503 * 109.47142 * 240.00626 * 16 14 12 20 20 C 1.46502 * 120.00130 * 184.24641 * 10 8 7 21 21 C 1.50697 * 109.46871 * 86.30663 * 20 10 8 22 22 C 1.34515 * 125.79563 * 90.00009 * 21 20 10 23 23 C 1.41375 * 106.84486 * 179.97438 * 22 21 20 24 24 C 1.34516 * 106.84064 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.42165 * 359.73663 * 24 23 22 26 26 O 1.33665 * 125.42322 * 270.02387 * 3 2 1 27 27 H 1.09000 * 109.47631 * 300.00065 * 1 2 3 28 28 H 1.08999 * 109.47327 * 59.99755 * 1 2 3 29 29 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47631 * 239.99935 * 2 1 3 31 31 H 1.09008 * 109.47238 * 120.00034 * 2 1 3 32 32 H 1.08992 * 109.47535 * 89.97732 * 6 5 4 33 33 H 1.09002 * 109.47183 * 209.98114 * 6 5 4 34 34 H 1.09005 * 109.47289 * 329.97399 * 6 5 4 35 35 H 1.09007 * 109.46734 * 203.69487 * 11 10 8 36 36 H 1.09001 * 109.46956 * 323.68962 * 11 10 8 37 37 H 0.96998 * 120.00008 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46896 * 206.30160 * 20 10 8 39 39 H 1.09001 * 109.46846 * 326.30658 * 20 10 8 40 40 H 1.07997 * 126.57616 * 359.96039 * 22 21 20 41 41 H 1.07998 * 126.58142 * 179.97438 * 23 22 21 42 42 H 1.08010 * 125.79026 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2850 2.1344 1.0644 5 6 2.7119 3.3437 0.6864 6 6 3.1121 4.4737 1.5996 7 6 2.7187 3.3671 -0.6768 8 6 3.1158 4.4919 -1.5313 9 8 3.3780 5.5710 -1.0338 10 7 3.1900 4.3299 -2.8672 11 6 2.7852 3.0596 -3.4746 12 6 1.2914 3.0514 -3.6736 13 1 0.7024 3.9066 -3.3769 14 6 0.6767 1.9521 -4.2344 15 7 1.3939 0.9104 -4.5953 16 14 -1.1750 1.9416 -4.4804 17 1 -1.7462 3.2231 -3.9939 18 1 -1.4816 1.7789 -5.9243 19 1 -1.7693 0.8143 -3.7180 20 6 3.6755 5.4240 -3.7120 21 6 5.1790 5.3654 -3.7947 22 6 5.8906 4.6902 -4.7151 23 6 7.2556 4.9100 -4.4198 24 6 7.2966 5.7060 -3.3362 25 8 6.0359 5.9831 -2.9652 26 8 2.2902 2.1514 -1.0892 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.1774 4.4036 1.8191 33 1 2.9034 5.4261 1.1122 34 1 2.5448 4.4088 2.5281 35 1 3.2808 2.9435 -4.4385 36 1 3.0689 2.2365 -2.8187 37 1 0.9614 0.1369 -4.9895 38 1 3.2525 5.3262 -4.7118 39 1 3.3721 6.3780 -3.2807 40 1 5.4951 4.0942 -5.5243 41 1 8.1028 4.5141 -4.9599 42 1 8.1916 6.0655 -2.8500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293499382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:51 Heat of formation + Delta-G solvation = 2.102604 kcal Electronic energy + Delta-G solvation = -27617.152888 eV Core-core repulsion = 23759.065338 eV Total energy + Delta-G solvation = -3858.087550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82531 -42.24112 -38.98143 -35.64642 -34.46698 -33.82423 -32.88308 -32.56465 -30.78272 -30.06494 -27.52869 -27.36528 -25.51530 -24.20256 -23.05633 -21.41915 -21.31717 -20.81159 -20.26882 -19.22738 -17.22536 -16.94448 -16.48935 -16.05641 -15.98672 -15.55097 -15.23335 -14.63459 -14.53481 -14.30485 -13.90539 -13.64026 -13.11215 -12.89840 -12.66948 -12.57892 -12.52890 -12.47566 -12.29847 -12.24470 -11.90515 -11.46824 -11.45538 -11.43591 -11.01206 -10.95573 -10.83311 -10.44250 -10.29058 -10.14168 -9.88952 -9.64345 -9.48554 -8.60407 -8.35191 -8.24843 -7.91104 -6.21623 -4.27284 1.44494 1.95086 2.82033 2.89099 3.10502 3.16728 3.26010 3.27375 3.30993 3.73900 3.87809 4.28317 4.35007 4.97834 5.11126 5.13099 5.17088 5.28618 5.30216 5.38452 5.39720 5.51467 5.67670 5.91439 5.92121 5.95033 5.96036 6.04674 6.08938 6.15150 6.20441 6.32246 6.34983 6.38963 6.42820 6.54061 6.76326 6.77520 7.22856 7.32919 7.45233 7.71296 7.97053 7.99302 8.18618 8.61878 8.79684 9.38622 10.85835 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005949 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.747192 B = 4705.704592 C = 6386.198655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C 0.204 3.796 4 N -0.499 5.499 5 C 0.054 3.946 6 C -0.073 4.073 7 C -0.092 4.092 8 C 0.607 3.393 9 O -0.540 6.540 10 N -0.583 5.583 11 C 0.233 3.767 12 C -0.530 4.530 13 H 0.059 0.941 14 C 0.071 3.929 15 N -0.887 5.887 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.198 3.802 21 C -0.019 4.019 22 C -0.200 4.200 23 C -0.217 4.217 24 C -0.050 4.050 25 O -0.166 6.166 26 O -0.130 6.130 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 1.938 4.192 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 C -0.001 4.001 4 N -0.230 5.230 5 C -0.071 4.071 6 C -0.130 4.130 7 C -0.148 4.148 8 C 0.395 3.605 9 O -0.421 6.421 10 N -0.312 5.312 11 C 0.115 3.885 12 C -0.569 4.569 13 H 0.078 0.922 14 C -0.132 4.132 15 N -0.526 5.526 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.207 1.207 20 C 0.075 3.925 21 C -0.071 4.071 22 C -0.220 4.220 23 C -0.236 4.236 24 C -0.118 4.118 25 O -0.061 6.061 26 O -0.013 6.013 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 5.517 2.222 5.099 7.834 hybrid contribution -0.732 -0.264 -1.206 1.435 sum 4.785 1.958 3.893 6.472 Atomic orbital electron populations 1.21748 0.93213 1.02572 1.03132 1.20041 0.96908 0.84603 1.04862 1.26463 0.97122 0.96884 0.79662 1.70227 1.18801 1.03620 1.30377 1.21882 0.99827 0.94156 0.91283 1.20262 1.01167 0.94425 0.97158 1.22766 1.10852 0.86886 0.94289 1.16489 0.77256 0.84928 0.81817 1.90756 1.52402 1.24686 1.74254 1.48238 1.60981 1.17052 1.04962 1.19750 0.95800 0.78572 0.94402 1.21397 0.91734 1.02240 1.41525 0.92248 1.24825 0.98168 0.95143 0.95050 1.69932 1.35466 1.05616 1.41542 0.86575 0.85452 0.78297 0.78030 1.19725 1.20784 1.20662 1.19750 0.83096 0.92293 0.97408 1.23155 0.93418 0.98607 0.91917 1.21674 0.92961 1.04525 1.02816 1.21791 0.97573 1.04141 1.00118 1.23986 0.85921 1.02925 0.98967 1.84106 1.15450 1.58164 1.48359 1.85093 1.60926 1.20890 1.34405 0.92197 0.91463 0.91290 0.88374 0.88284 0.90946 0.88851 0.91182 0.94094 0.93086 0.92648 0.86578 0.88887 0.83329 0.83805 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 37.15 0.37 -1.74 16 2 C -0.03 -0.39 6.56 -27.89 -0.18 -0.57 16 3 C 0.20 3.93 7.57 -12.79 -0.10 3.84 16 4 N -0.50 -9.73 11.26 -7.07 -0.08 -9.81 16 5 C 0.05 1.07 7.16 -82.47 -0.59 0.48 16 6 C -0.07 -1.20 9.94 36.00 0.36 -0.84 16 7 C -0.09 -2.00 6.78 -36.84 -0.25 -2.25 16 8 C 0.61 13.43 7.56 -12.83 -0.10 13.33 16 9 O -0.54 -12.03 14.38 5.20 0.07 -11.95 16 10 N -0.58 -12.48 2.47 -177.96 -0.44 -12.91 16 11 C 0.23 5.53 4.75 -5.19 -0.02 5.50 16 12 C -0.53 -13.54 8.53 -34.44 -0.29 -13.83 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -23.42 13.29 55.43 0.74 -22.69 16 16 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 C 0.20 3.59 5.91 -5.19 -0.03 3.56 16 21 C -0.02 -0.34 6.88 -35.63 -0.25 -0.59 16 22 C -0.20 -3.25 10.81 -39.71 -0.43 -3.68 16 23 C -0.22 -3.08 10.91 -39.71 -0.43 -3.51 16 24 C -0.05 -0.69 12.09 29.42 0.36 -0.34 16 25 O -0.17 -2.91 10.65 5.69 0.06 -2.85 16 26 O -0.13 -2.89 6.87 4.41 0.03 -2.86 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.60 6.36 -51.93 -0.33 1.27 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.99 8.02 -51.93 -0.42 0.58 16 36 H 0.05 1.31 5.37 -51.93 -0.28 1.03 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.12 1.92 8.04 -51.93 -0.42 1.50 16 39 H 0.09 1.64 7.48 -51.93 -0.39 1.26 16 40 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -30.38 363.11 -6.46 -36.84 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.60 Total: 4.56 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.69 Total: 1.10 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.22 Total: -45.41 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.38 -6.46 -36.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293499382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.946 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds