Wall clock time and date at job start Tue Mar 31 2020 13:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47334 * 2 1 4 4 N 1.30618 * 125.42289 * 90.01826 * 3 2 1 5 5 C 1.33696 * 108.99866 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.27532 * 180.02562 * 5 4 3 7 7 C 1.36338 * 107.44812 * 0.02562 * 5 4 3 8 8 C 1.46725 * 126.64309 * 180.02562 * 7 5 4 9 9 O 1.21690 * 119.99839 * 353.83037 * 8 7 5 10 10 N 1.34776 * 120.00335 * 173.83390 * 8 7 5 11 11 C 1.46504 * 119.99658 * 4.24525 * 10 8 7 12 12 C 1.50696 * 109.47105 * 83.69231 * 11 10 8 13 13 H 1.07999 * 120.00392 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99884 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99923 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00118 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46745 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47247 * 120.00001 * 16 14 12 19 19 H 1.48503 * 109.47142 * 240.00626 * 16 14 12 20 20 C 1.46502 * 120.00130 * 184.24641 * 10 8 7 21 21 C 1.50697 * 109.46871 * 86.30663 * 20 10 8 22 22 C 1.34515 * 125.79563 * 90.00009 * 21 20 10 23 23 C 1.41375 * 106.84486 * 179.97438 * 22 21 20 24 24 C 1.34516 * 106.84064 * 0.02562 * 23 22 21 25 25 O 1.34302 * 108.42165 * 359.73663 * 24 23 22 26 26 O 1.33665 * 125.42322 * 270.02387 * 3 2 1 27 27 H 1.09000 * 109.47631 * 300.00065 * 1 2 3 28 28 H 1.08999 * 109.47327 * 59.99755 * 1 2 3 29 29 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47631 * 239.99935 * 2 1 3 31 31 H 1.09008 * 109.47238 * 120.00034 * 2 1 3 32 32 H 1.08992 * 109.47535 * 89.97732 * 6 5 4 33 33 H 1.09002 * 109.47183 * 209.98114 * 6 5 4 34 34 H 1.09005 * 109.47289 * 329.97399 * 6 5 4 35 35 H 1.09007 * 109.46734 * 203.69487 * 11 10 8 36 36 H 1.09001 * 109.46956 * 323.68962 * 11 10 8 37 37 H 0.96998 * 120.00008 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.46896 * 206.30160 * 20 10 8 39 39 H 1.09001 * 109.46846 * 326.30658 * 20 10 8 40 40 H 1.07997 * 126.57616 * 359.96039 * 22 21 20 41 41 H 1.07998 * 126.58142 * 179.97438 * 23 22 21 42 42 H 1.08010 * 125.79026 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2850 2.1344 1.0644 5 6 2.7119 3.3437 0.6864 6 6 3.1121 4.4737 1.5996 7 6 2.7187 3.3671 -0.6768 8 6 3.1158 4.4919 -1.5313 9 8 3.3780 5.5710 -1.0338 10 7 3.1900 4.3299 -2.8672 11 6 2.7852 3.0596 -3.4746 12 6 1.2914 3.0514 -3.6736 13 1 0.7024 3.9066 -3.3769 14 6 0.6767 1.9521 -4.2344 15 7 1.3939 0.9104 -4.5953 16 14 -1.1750 1.9416 -4.4804 17 1 -1.7462 3.2231 -3.9939 18 1 -1.4816 1.7789 -5.9243 19 1 -1.7693 0.8143 -3.7180 20 6 3.6755 5.4240 -3.7120 21 6 5.1790 5.3654 -3.7947 22 6 5.8906 4.6902 -4.7151 23 6 7.2556 4.9100 -4.4198 24 6 7.2966 5.7060 -3.3362 25 8 6.0359 5.9831 -2.9652 26 8 2.2902 2.1514 -1.0892 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.1774 4.4036 1.8191 33 1 2.9034 5.4261 1.1122 34 1 2.5448 4.4088 2.5281 35 1 3.2808 2.9435 -4.4385 36 1 3.0689 2.2365 -2.8187 37 1 0.9614 0.1369 -4.9895 38 1 3.2525 5.3262 -4.7118 39 1 3.3721 6.3780 -3.2807 40 1 5.4951 4.0942 -5.5243 41 1 8.1028 4.5141 -4.9599 42 1 8.1916 6.0655 -2.8500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293499382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:50 Heat of formation + Delta-G solvation = -16.719230 kcal Electronic energy + Delta-G solvation = -27617.969064 eV Core-core repulsion = 23759.065338 eV Total energy + Delta-G solvation = -3858.903726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.38709 -43.47756 -40.64356 -37.32336 -36.03647 -35.12702 -34.71793 -33.88374 -32.21972 -31.44861 -29.29824 -28.85831 -26.92196 -25.64483 -24.86276 -22.83145 -22.62150 -22.24454 -21.60460 -20.78852 -18.90806 -18.45990 -18.09124 -17.72675 -17.54329 -17.03548 -16.62013 -16.38759 -16.07358 -15.61371 -15.35795 -14.99011 -14.64569 -14.40157 -14.19100 -14.12989 -13.91826 -13.72811 -13.59160 -13.54680 -13.33041 -13.18772 -13.02782 -12.74454 -12.63921 -12.56098 -12.22086 -12.13360 -11.91979 -11.77628 -11.75450 -11.16590 -10.84781 -10.58296 -9.99078 -9.62445 -9.43594 -8.19467 -6.31480 -0.14921 0.68912 1.35273 1.36715 1.40658 1.49393 1.54144 1.70165 1.95091 2.18032 2.33623 2.42821 2.90541 3.11829 3.54307 3.73313 3.80366 4.05661 4.14050 4.16344 4.21010 4.23913 4.35930 4.49330 4.57568 4.63768 4.69688 4.71209 4.84795 4.89613 4.90984 4.96384 5.00927 5.04288 5.17112 5.24301 5.28066 5.39021 5.54275 5.61413 5.72430 6.02831 6.17242 6.29511 6.58801 6.76112 6.98177 7.37472 8.87666 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005949 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.747192 B = 4705.704592 C = 6386.198655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C 0.204 3.796 4 N -0.504 5.504 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.132 4.132 8 C 0.601 3.399 9 O -0.550 6.550 10 N -0.586 5.586 11 C 0.254 3.746 12 C -0.538 4.538 13 H 0.043 0.957 14 C 0.037 3.963 15 N -0.909 5.909 16 Si 0.941 3.059 17 H -0.279 1.279 18 H -0.275 1.275 19 H -0.271 1.271 20 C 0.197 3.803 21 C -0.048 4.048 22 C -0.202 4.202 23 C -0.224 4.224 24 C -0.041 4.041 25 O -0.189 6.189 26 O -0.156 6.156 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.174 0.826 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 1.285 4.978 7.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C 0.000 4.000 4 N -0.234 5.234 5 C -0.064 4.064 6 C -0.126 4.126 7 C -0.188 4.188 8 C 0.390 3.610 9 O -0.432 6.432 10 N -0.315 5.315 11 C 0.134 3.866 12 C -0.576 4.576 13 H 0.062 0.938 14 C -0.164 4.164 15 N -0.548 5.548 16 Si 0.767 3.233 17 H -0.204 1.204 18 H -0.201 1.201 19 H -0.196 1.196 20 C 0.075 3.925 21 C -0.099 4.099 22 C -0.222 4.222 23 C -0.243 4.243 24 C -0.109 4.109 25 O -0.085 6.085 26 O -0.041 6.041 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.191 0.809 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.977 1.582 5.876 8.530 hybrid contribution -0.805 -0.090 -1.409 1.625 sum 5.172 1.492 4.468 6.996 Atomic orbital electron populations 1.21727 0.92402 1.04277 1.01679 1.20362 0.97434 0.82254 1.06412 1.27513 0.95492 0.98057 0.78979 1.70294 1.19406 1.03531 1.30198 1.22462 0.97960 0.94917 0.91105 1.20348 1.02458 0.92564 0.97232 1.22892 1.13477 0.87216 0.95186 1.16633 0.77196 0.85125 0.82038 1.90724 1.53133 1.24983 1.74372 1.48225 1.61088 1.17011 1.05179 1.19316 0.94727 0.79244 0.93311 1.21442 0.92560 1.01909 1.41736 0.93840 1.25395 1.01593 0.94760 0.94682 1.70000 1.36883 1.06015 1.41857 0.85764 0.81226 0.78082 0.78210 1.20435 1.20052 1.19635 1.19826 0.84250 0.91193 0.97280 1.22946 0.93104 1.00634 0.93252 1.21916 0.94299 1.03694 1.02332 1.22153 0.97324 1.04284 1.00540 1.24908 0.85731 1.01635 0.98578 1.84082 1.16830 1.58721 1.48874 1.85057 1.61715 1.21424 1.35864 0.91749 0.94697 0.88014 0.88497 0.84930 0.89340 0.89816 0.88847 0.95206 0.94950 0.92271 0.85701 0.88944 0.83152 0.80852 0.74377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.89 71.98 0.71 -3.11 16 2 C -0.03 -0.76 6.56 29.85 0.20 -0.57 16 3 C 0.20 7.84 7.57 88.29 0.67 8.51 16 4 N -0.50 -19.22 11.26 -291.06 -3.28 -22.49 16 5 C 0.06 2.40 7.16 41.83 0.30 2.70 16 6 C -0.07 -2.19 9.94 71.24 0.71 -1.48 16 7 C -0.13 -5.94 6.78 24.05 0.16 -5.77 16 8 C 0.60 27.48 7.56 86.46 0.65 28.13 16 9 O -0.55 -25.11 14.38 -4.32 -0.06 -25.17 16 10 N -0.59 -26.06 2.47 -835.16 -2.06 -28.11 16 11 C 0.25 12.48 4.75 85.63 0.41 12.89 16 12 C -0.54 -28.23 8.53 25.60 0.22 -28.01 16 13 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 14 C 0.04 1.91 5.46 84.65 0.46 2.38 16 15 N -0.91 -48.35 13.29 21.45 0.28 -48.06 16 16 Si 0.94 41.35 29.54 68.60 2.03 43.38 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 C 0.20 7.42 5.91 85.63 0.51 7.93 16 21 C -0.05 -1.73 6.88 24.83 0.17 -1.56 16 22 C -0.20 -6.55 10.81 22.19 0.24 -6.31 16 23 C -0.22 -5.94 10.91 22.19 0.24 -5.70 16 24 C -0.04 -1.07 12.09 66.97 0.81 -0.26 16 25 O -0.19 -6.58 10.65 -2.54 -0.03 -6.60 16 26 O -0.16 -7.12 6.87 -7.13 -0.05 -7.17 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.08 2.85 6.36 -2.39 -0.02 2.83 16 34 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.03 1.51 8.02 -2.38 -0.02 1.49 16 36 H 0.03 1.74 5.37 -2.39 -0.01 1.73 16 37 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 38 H 0.13 4.32 8.04 -2.39 -0.02 4.30 16 39 H 0.09 3.42 7.48 -2.39 -0.02 3.40 16 40 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 42 H 0.24 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -66.35 363.11 4.33 -62.02 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.04 Total: 22.45 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.46 Total: 9.77 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -5.05 Total: -98.67 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.14 Total: -38.95 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -66.35 4.33 -62.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293499382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.300 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds