Wall clock time and date at job start Tue Mar 31 2020 12:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99881 * 179.97438 * 18 16 15 20 20 C 1.34782 * 119.99814 * 179.97438 * 19 18 16 21 21 O 1.21279 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99867 * 180.02562 * 20 19 18 23 23 C 1.52991 * 109.47075 * 180.02562 * 22 20 19 24 24 C 1.52999 * 117.50027 * 243.62282 * 23 22 20 25 25 C 1.52999 * 60.00378 * 252.51121 * 24 23 22 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 34 34 H 0.97000 * 120.00264 * 0.02562 * 19 18 16 35 35 H 1.09004 * 109.47112 * 300.00919 * 22 20 19 36 36 H 1.09005 * 109.46849 * 60.00212 * 22 20 19 37 37 H 1.08998 * 115.55123 * 29.33043 * 23 22 20 38 38 H 1.09006 * 117.49946 * 0.02562 * 24 23 22 39 39 H 1.08997 * 117.50617 * 145.02044 * 24 23 22 40 40 H 1.09003 * 117.49480 * 252.51171 * 25 24 23 41 41 H 1.09004 * 117.50003 * 107.48326 * 25 24 23 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 7 0.4406 -9.5427 -2.3082 20 6 -0.1634 -10.7407 -2.4372 21 8 -0.5170 -11.3509 -1.4506 22 6 -0.3993 -11.3219 -3.8075 23 6 -1.0957 -12.6775 -3.6734 24 6 -0.3379 -13.9127 -4.1642 25 6 -1.5295 -13.3794 -4.9620 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 0.3769 -9.4904 -0.2452 34 1 0.7238 -9.0548 -3.0973 35 1 -1.0292 -10.6456 -4.3854 36 1 0.5559 -11.4524 -4.3161 37 1 -1.7342 -12.7934 -2.7977 38 1 0.6572 -13.7595 -4.5822 39 1 -0.4775 -14.8416 -3.6113 40 1 -2.4532 -13.9574 -4.9337 41 1 -1.3187 -12.8752 -5.9051 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294312249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:41 Heat of formation + Delta-G solvation = -20.054873 kcal Electronic energy + Delta-G solvation = -24752.647757 eV Core-core repulsion = 20893.599387 eV Total energy + Delta-G solvation = -3859.048370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61313 -39.53492 -38.74530 -37.47621 -36.52072 -35.36640 -32.68375 -32.23749 -31.58688 -29.51245 -29.04673 -26.88621 -25.22301 -22.78547 -22.32423 -21.86777 -21.56282 -20.80137 -20.12725 -18.11385 -17.92882 -17.52394 -16.88250 -16.44981 -16.05165 -15.69377 -15.30213 -14.96736 -14.46874 -14.45281 -14.31946 -14.23838 -13.90844 -13.49167 -13.46597 -13.06924 -12.65851 -12.44532 -11.98117 -11.92692 -11.89410 -11.60252 -11.35078 -11.27781 -10.84463 -10.80925 -10.79975 -10.62802 -10.55493 -10.43716 -10.36315 -10.00871 -9.32851 -8.82124 -8.53989 -8.08576 -7.21437 -6.42438 -4.01496 1.55858 2.10518 2.19008 2.40552 2.63798 3.14336 3.14921 3.19830 3.36410 3.78581 3.98340 4.21303 4.28480 4.49180 4.55734 4.67461 4.80838 4.95180 5.03980 5.08378 5.10657 5.17957 5.20920 5.24820 5.45663 5.49778 5.63013 5.71112 5.74165 5.88348 5.93040 6.17444 6.33915 6.47087 6.50730 6.66786 6.91680 7.08166 7.25057 7.32734 7.37535 7.44879 7.69527 7.82495 8.02458 8.22558 9.03259 9.73785 10.75741 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.002020 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.393981 B =13855.090971 C =14446.339274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.082 4.082 16 C 0.515 3.485 17 O -0.518 6.518 18 N -0.533 5.533 19 N -0.524 5.524 20 C 0.515 3.485 21 O -0.541 6.541 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.173 4.173 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.430 0.570 34 H 0.432 0.568 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 -22.847 -5.373 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.037 4.037 15 C -0.123 4.123 16 C 0.302 3.698 17 O -0.390 6.390 18 N -0.284 5.284 19 N -0.271 5.271 20 C 0.302 3.698 21 O -0.417 6.417 22 C -0.142 4.142 23 C -0.161 4.161 24 C -0.215 4.215 25 C -0.215 4.215 26 C -0.192 4.192 27 H 0.079 0.921 28 H 0.144 0.856 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.272 0.728 34 H 0.274 0.726 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.294 -22.592 -5.407 23.231 hybrid contribution 0.542 0.851 -0.083 1.013 sum 0.837 -21.741 -5.489 22.438 Atomic orbital electron populations 1.70044 1.05936 1.27583 1.46317 1.25284 0.95847 0.98800 0.96639 0.85713 0.78903 0.80126 0.78687 1.19921 1.20284 1.19211 1.21316 0.91781 0.80832 1.52799 0.89104 1.83976 1.34239 1.11374 1.78675 1.19272 0.90253 0.87981 0.92460 1.21198 0.93836 0.99038 1.10665 1.20682 0.98427 0.92295 0.97927 1.20355 0.93227 0.96983 1.10831 1.18580 0.93226 0.91413 1.00477 1.20503 1.03267 0.95974 0.92536 1.21191 0.76829 0.78698 0.93071 1.90782 1.49576 1.59043 1.39629 1.45163 1.63332 1.20659 0.99240 1.44968 1.61711 1.20011 1.00417 1.20863 0.77122 0.79236 0.92601 1.90713 1.51262 1.59889 1.39822 1.21149 1.02947 0.96798 0.93298 1.22032 1.03582 0.91151 0.99298 1.23061 0.96645 0.98042 1.03778 1.23022 0.99270 1.03949 0.95304 1.19952 0.99117 0.89971 1.10175 0.92081 0.85569 0.87408 0.87831 0.87699 0.87547 0.72823 0.72624 0.87727 0.88147 0.86200 0.88713 0.88653 0.88524 0.88574 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 9 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 10 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 12 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.19 -3.41 9.70 -39.54 -0.38 -3.79 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 15 C -0.08 -1.02 5.83 -29.03 -0.17 -1.19 16 16 C 0.52 7.06 7.94 -10.99 -0.09 6.98 16 17 O -0.52 -9.29 15.87 5.56 0.09 -9.20 16 18 N -0.53 -5.92 6.26 31.22 0.20 -5.73 16 19 N -0.52 -5.32 6.26 31.22 0.20 -5.12 16 20 C 0.52 5.00 7.95 -10.98 -0.09 4.91 16 21 O -0.54 -6.92 15.40 5.56 0.09 -6.84 16 22 C -0.10 -0.63 5.98 -27.89 -0.17 -0.80 16 23 C -0.14 -1.01 5.41 -90.62 -0.49 -1.50 16 24 C -0.18 -1.09 10.18 -26.73 -0.27 -1.36 16 25 C -0.18 -0.98 10.25 -26.73 -0.27 -1.26 16 26 C -0.17 -3.70 9.65 -39.40 -0.38 -4.08 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.43 4.07 8.00 -182.59 -1.46 2.61 16 34 H 0.43 4.02 8.00 -182.60 -1.46 2.56 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.45 7.88 -51.93 -0.41 0.05 16 37 H 0.12 1.06 7.31 -51.93 -0.38 0.68 16 38 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -35.86 367.47 -9.38 -45.24 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.63 Total: 7.10 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.59 Total: -16.69 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 1.15 Total: -35.65 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.17 Total: -21.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.86 -9.38 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294312249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.187 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds