Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.40101 * 119.99881 * 179.97438 * 18 16 15 20 20 C 1.34782 * 119.99814 * 179.97438 * 19 18 16 21 21 O 1.21279 * 120.00146 * 0.02562 * 20 19 18 22 22 C 1.50702 * 119.99867 * 180.02562 * 20 19 18 23 23 C 1.52991 * 109.47075 * 180.02562 * 22 20 19 24 24 C 1.52999 * 117.50027 * 243.62282 * 23 22 20 25 25 C 1.52999 * 60.00378 * 252.51121 * 24 23 22 26 26 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 27 27 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 30 30 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 31 31 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 32 32 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 33 33 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 34 34 H 0.97000 * 120.00264 * 0.02562 * 19 18 16 35 35 H 1.09004 * 109.47112 * 300.00919 * 22 20 19 36 36 H 1.09005 * 109.46849 * 60.00212 * 22 20 19 37 37 H 1.08998 * 115.55123 * 29.33043 * 23 22 20 38 38 H 1.09006 * 117.49946 * 0.02562 * 24 23 22 39 39 H 1.08997 * 117.50617 * 145.02044 * 24 23 22 40 40 H 1.09003 * 117.49480 * 252.51171 * 25 24 23 41 41 H 1.09004 * 117.50003 * 107.48326 * 25 24 23 42 42 H 1.08006 * 120.03219 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 7 0.4406 -9.5427 -2.3082 20 6 -0.1634 -10.7407 -2.4372 21 8 -0.5170 -11.3509 -1.4506 22 6 -0.3993 -11.3219 -3.8075 23 6 -1.0957 -12.6775 -3.6734 24 6 -0.3379 -13.9127 -4.1642 25 6 -1.5295 -13.3794 -4.9620 26 6 1.4365 -4.7345 0.2253 27 1 -0.4849 0.8401 -0.0004 28 1 3.9527 -2.4857 -0.0140 29 1 5.2811 -4.5471 0.1902 30 1 4.1533 -6.7247 0.4045 31 1 2.1300 -7.9004 1.0433 32 1 0.5456 -7.0924 0.9734 33 1 0.3769 -9.4904 -0.2452 34 1 0.7238 -9.0548 -3.0973 35 1 -1.0292 -10.6456 -4.3854 36 1 0.5559 -11.4524 -4.3161 37 1 -1.7342 -12.7934 -2.7977 38 1 0.6572 -13.7595 -4.5822 39 1 -0.4775 -14.8416 -3.6113 40 1 -2.4532 -13.9574 -4.9337 41 1 -1.3187 -12.8752 -5.9051 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294312249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -45.149623 kcal Electronic energy + Delta-G solvation = -24753.735947 eV Core-core repulsion = 20893.599387 eV Total energy + Delta-G solvation = -3860.136560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56885 -40.82743 -40.13522 -38.28576 -37.95424 -36.35331 -34.34888 -33.77455 -32.65796 -30.90462 -30.07003 -28.19087 -27.19929 -23.48292 -23.21862 -23.10777 -22.79519 -21.99884 -20.95935 -19.53377 -18.98674 -18.84881 -18.52326 -17.27637 -16.99274 -16.73977 -16.50674 -16.30832 -16.10294 -15.78341 -15.54020 -15.25634 -14.97271 -14.84706 -14.71755 -14.34618 -14.00741 -13.67039 -13.56635 -12.97749 -12.93146 -12.48119 -12.43313 -12.41121 -12.37993 -12.30792 -12.21566 -12.10286 -11.46117 -11.32505 -11.20017 -11.07173 -10.84329 -10.79336 -9.65187 -9.46585 -8.97465 -8.46421 -6.14810 0.41468 0.75296 0.93405 1.24339 1.34612 1.44392 1.52471 1.68393 2.18120 2.76514 2.87965 3.03370 3.20149 3.43595 3.56957 3.73341 3.79650 4.02849 4.07497 4.11514 4.18335 4.32515 4.41628 4.50119 4.58280 4.62518 4.63160 4.73100 4.75280 4.83787 5.06014 5.07210 5.13672 5.29436 5.30802 5.34681 5.57758 5.65363 5.69883 5.73225 5.75843 6.03469 6.24098 6.46090 6.83845 6.98243 7.29746 7.79928 8.77031 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024786 B = 0.002020 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.393981 B =13855.090971 C =14446.339274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.244 4.244 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.027 4.027 15 C -0.080 4.080 16 C 0.520 3.480 17 O -0.567 6.567 18 N -0.523 5.523 19 N -0.525 5.525 20 C 0.516 3.484 21 O -0.574 6.574 22 C -0.094 4.094 23 C -0.159 4.159 24 C -0.182 4.182 25 C -0.167 4.167 26 C -0.190 4.190 27 H 0.272 0.728 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.128 0.872 33 H 0.439 0.561 34 H 0.436 0.564 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 -25.198 -5.665 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.263 4.263 12 C -0.092 4.092 13 C -0.195 4.195 14 C -0.028 4.028 15 C -0.121 4.121 16 C 0.307 3.693 17 O -0.444 6.444 18 N -0.272 5.272 19 N -0.273 5.273 20 C 0.305 3.695 21 O -0.452 6.452 22 C -0.134 4.134 23 C -0.178 4.178 24 C -0.219 4.219 25 C -0.204 4.204 26 C -0.209 4.209 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.283 0.717 34 H 0.279 0.721 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.129 0.871 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.438 -25.029 -5.684 25.782 hybrid contribution -0.061 1.164 0.027 1.166 sum 2.377 -23.865 -5.657 24.641 Atomic orbital electron populations 1.70193 1.08016 1.28723 1.49093 1.26610 0.96894 1.02758 0.95951 0.84575 0.77831 0.74516 0.79197 1.18938 1.19488 1.17579 1.21817 0.92493 0.81485 1.53126 0.88198 1.83935 1.35918 1.12564 1.81740 1.19887 0.91682 0.87952 0.94468 1.21318 0.93131 1.00305 1.11578 1.21137 1.00262 0.91473 0.96346 1.20994 0.93439 0.98115 1.06973 1.19083 0.93726 0.92461 0.97545 1.20618 1.04969 0.93794 0.92699 1.21238 0.76378 0.78870 0.92766 1.90778 1.52037 1.60434 1.41103 1.45001 1.61980 1.19975 1.00283 1.45183 1.61796 1.20218 1.00086 1.21536 0.75891 0.78536 0.93537 1.90702 1.52556 1.60687 1.41240 1.21232 1.04459 0.96403 0.91334 1.21979 1.04258 0.92057 0.99476 1.23153 0.97452 0.97448 1.03825 1.23103 0.99108 1.03088 0.95073 1.20234 0.99378 0.90437 1.10895 0.91892 0.86494 0.83676 0.83271 0.83098 0.85389 0.71713 0.72097 0.85791 0.85786 0.88579 0.87635 0.89005 0.88307 0.87062 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.64 13.67 21.61 0.30 -57.35 16 2 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 3 Si 1.02 43.68 29.55 68.60 2.03 45.70 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -24.69 9.49 67.92 0.64 -24.04 16 8 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 9 O -0.23 -14.57 9.76 -22.74 -0.22 -14.79 16 10 C 0.11 5.68 6.65 22.58 0.15 5.83 16 11 C -0.24 -11.00 9.17 22.39 0.21 -10.80 16 12 C -0.07 -2.61 10.04 22.25 0.22 -2.38 16 13 C -0.18 -5.49 9.70 22.30 0.22 -5.28 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.08 -1.72 5.83 29.10 0.17 -1.55 16 16 C 0.52 12.98 7.94 87.66 0.70 13.68 16 17 O -0.57 -19.56 15.87 -3.04 -0.05 -19.61 16 18 N -0.52 -10.39 6.26 -173.54 -1.09 -11.48 16 19 N -0.52 -9.68 6.26 -173.53 -1.09 -10.77 16 20 C 0.52 9.18 7.95 87.66 0.70 9.88 16 21 O -0.57 -14.11 15.40 -3.03 -0.05 -14.16 16 22 C -0.09 -0.97 5.98 29.85 0.18 -0.79 16 23 C -0.16 -2.03 5.41 -10.79 -0.06 -2.09 16 24 C -0.18 -1.92 10.18 30.59 0.31 -1.61 16 25 C -0.17 -1.50 10.25 30.60 0.31 -1.19 16 26 C -0.19 -8.30 9.65 22.39 0.22 -8.09 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 29 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 31 H 0.15 1.91 8.08 -2.39 -0.02 1.89 16 32 H 0.13 2.26 8.08 -2.39 -0.02 2.24 16 33 H 0.44 7.17 8.00 -213.32 -1.71 5.46 16 34 H 0.44 7.37 8.00 -213.32 -1.71 5.67 16 35 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.12 0.73 7.88 -2.38 -0.02 0.71 16 37 H 0.10 1.70 7.31 -2.39 -0.02 1.68 16 38 H 0.11 0.87 8.03 -2.38 -0.02 0.85 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -85.10 367.47 1.84 -83.26 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -2.34 Total: 29.59 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.34 Total: -30.40 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.88 Total: -79.60 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.32 Total: -48.56 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -85.10 1.84 -83.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294312249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -85.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds