Wall clock time and date at job start Tue Mar 31 2020 13:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47542 * 2 1 4 4 C 1.50697 * 109.47576 * 179.97438 * 3 2 1 5 5 C 1.35322 * 126.66350 * 89.99949 * 4 3 2 6 6 C 1.42267 * 103.91856 * 179.73931 * 5 4 3 7 7 C 1.48338 * 126.93764 * 180.26007 * 6 5 4 8 8 O 1.21496 * 119.99494 * 353.56185 * 7 6 5 9 9 N 1.34774 * 120.00130 * 173.55503 * 7 6 5 10 10 C 1.46497 * 119.99949 * 4.05335 * 9 7 6 11 11 C 1.50696 * 109.47591 * 83.33383 * 10 9 7 12 12 H 1.08005 * 119.99828 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00332 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99850 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00178 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47156 * 89.99635 * 15 13 11 17 17 H 1.48494 * 109.47212 * 209.99860 * 15 13 11 18 18 H 1.48502 * 109.46811 * 329.99728 * 15 13 11 19 19 C 1.46504 * 119.99937 * 184.04253 * 9 7 6 20 20 C 1.50701 * 109.46793 * 90.00702 * 19 9 7 21 21 C 1.34511 * 125.79285 * 90.00002 * 20 19 9 22 22 C 1.41381 * 106.84653 * 180.02562 * 21 20 19 23 23 C 1.34521 * 106.83618 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.42027 * 359.74224 * 23 22 21 25 25 N 1.30983 * 106.12790 * 0.25735 * 6 5 4 26 26 O 1.20900 * 111.43890 * 0.02562 * 25 6 5 27 27 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47298 * 299.99944 * 1 2 3 29 29 H 1.08999 * 109.46975 * 59.99695 * 1 2 3 30 30 H 1.08999 * 109.47120 * 239.99571 * 2 1 3 31 31 H 1.08999 * 109.46975 * 120.00305 * 2 1 3 32 32 H 1.08999 * 109.47263 * 59.99659 * 3 2 1 33 33 H 1.08999 * 109.47234 * 300.00146 * 3 2 1 34 34 H 1.08002 * 128.03635 * 359.97438 * 5 4 3 35 35 H 1.09001 * 109.47154 * 203.33134 * 10 9 7 36 36 H 1.08997 * 109.47208 * 323.32908 * 10 9 7 37 37 H 0.96998 * 120.00275 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.46863 * 210.00512 * 19 9 7 39 39 H 1.09000 * 109.47239 * 330.00624 * 19 9 7 40 40 H 1.08003 * 126.57883 * 359.95782 * 21 20 19 41 41 H 1.07999 * 126.58449 * 179.97438 * 22 21 20 42 42 H 1.08003 * 125.78669 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4422 -1.0845 6 6 5.6673 1.4486 -0.5339 7 6 6.9481 1.4565 -1.2822 8 8 6.9458 1.3401 -2.4916 9 7 8.1143 1.5930 -0.6205 10 6 8.1242 1.6442 0.8435 11 6 8.1003 0.2422 1.3955 12 1 8.0794 -0.6026 0.7230 13 6 8.1041 0.0380 2.7590 14 7 8.1290 1.0667 3.5779 15 14 8.0737 -1.7000 3.4433 16 1 9.4655 -2.1881 3.6165 17 1 7.3811 -1.7028 4.7567 18 1 7.3506 -2.5906 2.5003 19 6 9.3721 1.6898 -1.3654 20 6 9.6658 3.1364 -1.6694 21 6 10.3684 3.9773 -0.8893 22 6 10.3973 5.2249 -1.5538 23 6 9.7110 5.0716 -2.7005 24 8 9.2754 3.8030 -2.7681 25 7 5.5159 1.4462 0.7671 26 8 4.3470 1.4390 1.0759 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 4.0710 1.4417 -2.1264 35 1 9.0263 2.1531 1.1832 36 1 7.2468 2.1877 1.1940 37 1 8.1320 0.9230 4.5372 38 1 10.1819 1.2727 -0.7668 39 1 9.2858 1.1327 -2.2983 40 1 10.8223 3.7444 0.0626 41 1 10.8780 6.1277 -1.2072 42 1 9.5431 5.8375 -3.4433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294609950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:33 Heat of formation + Delta-G solvation = 45.059251 kcal Electronic energy + Delta-G solvation = -26795.307873 eV Core-core repulsion = 22939.083063 eV Total energy + Delta-G solvation = -3856.224810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.45084 -42.21611 -39.00235 -35.66075 -35.26073 -33.42096 -32.73700 -32.49489 -31.40386 -30.21861 -27.32900 -26.85032 -26.05460 -23.66476 -22.80644 -22.22227 -21.46470 -21.35579 -20.24525 -18.56848 -17.26685 -17.03890 -16.85639 -16.46906 -16.02178 -15.90180 -15.24003 -15.04061 -14.60557 -14.48380 -14.06417 -13.75116 -13.41416 -13.18154 -12.89687 -12.56536 -12.49325 -12.44632 -12.40610 -12.17238 -11.73186 -11.60073 -11.42631 -11.33896 -10.95382 -10.90319 -10.76002 -10.28372 -10.07722 -9.84271 -9.81144 -9.61038 -9.52826 -8.95057 -8.45331 -8.22620 -7.91884 -6.08628 -4.12828 1.84373 1.97640 2.15584 2.86927 3.26700 3.30584 3.33789 3.37455 3.44194 3.75869 3.90768 4.39162 4.65648 4.75866 4.90984 4.94984 5.03095 5.21827 5.27024 5.29816 5.32500 5.39827 5.54196 5.57387 5.63141 5.65531 5.79086 5.84053 5.97171 5.99673 6.08059 6.10638 6.18033 6.24364 6.33586 6.38289 6.61072 6.79934 7.34101 7.44023 7.51442 7.82417 8.10621 8.13739 8.60177 8.86474 8.91360 9.51641 10.99565 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.005172 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.840096 B = 5411.967723 C = 7735.886059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.033 4.033 4 C -0.060 4.060 5 C -0.184 4.184 6 C -0.034 4.034 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.579 5.579 10 C 0.230 3.770 11 C -0.525 4.525 12 H 0.055 0.945 13 C 0.073 3.927 14 N -0.886 5.886 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.196 3.804 20 C -0.019 4.019 21 C -0.199 4.199 22 C -0.216 4.216 23 C -0.051 4.051 24 O -0.168 6.168 25 N -0.257 5.257 26 O 0.121 5.879 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 4.373 -7.668 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.071 4.071 4 C -0.122 4.122 5 C -0.206 4.206 6 C -0.193 4.193 7 C 0.386 3.614 8 O -0.432 6.432 9 N -0.309 5.309 10 C 0.111 3.889 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.130 4.130 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.072 3.928 20 C -0.070 4.070 21 C -0.219 4.219 22 C -0.236 4.236 23 C -0.119 4.119 24 O -0.063 6.063 25 N 0.046 4.954 26 O 0.041 5.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.188 0.812 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.800 4.222 -7.323 10.849 hybrid contribution -0.086 -0.676 0.015 0.682 sum -6.887 3.546 -7.308 10.649 Atomic orbital electron populations 1.21762 0.95243 1.01909 1.01904 1.21572 0.95895 0.95523 1.03294 1.20115 0.84187 0.98521 1.04325 1.24357 0.95926 1.05584 0.86367 1.22260 0.90195 1.07412 1.00764 1.23288 0.95979 1.09696 0.90341 1.16971 0.82181 0.76578 0.85652 1.90692 1.87004 1.52210 1.13307 1.48234 1.03884 1.68501 1.10275 1.19867 0.99574 0.98400 0.71091 1.21261 1.51827 0.91619 0.91655 0.92647 1.24796 0.94733 0.96829 0.96660 1.69914 1.49632 1.29622 1.03206 0.86605 0.78113 0.84859 0.78507 1.20627 1.21024 1.20033 1.19758 0.88014 0.86603 0.98387 1.23166 1.00440 0.96704 0.86710 1.21686 1.05106 0.93164 1.01937 1.21801 1.05693 0.99394 0.96680 1.23974 1.01828 0.85198 1.00932 1.84094 1.61288 1.21432 1.39491 1.74998 0.94367 1.11309 1.14691 1.84962 1.11996 1.65424 1.33507 0.92510 0.92477 0.92627 0.91377 0.91149 0.89506 0.88942 0.81209 0.94568 0.91991 0.92719 0.86668 0.88855 0.83268 0.83777 0.78614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.22 5.92 -26.73 -0.16 -1.38 16 3 C -0.03 -0.34 5.78 -27.89 -0.16 -0.50 16 4 C -0.06 -0.92 6.73 -35.35 -0.24 -1.16 16 5 C -0.18 -3.17 10.93 -39.07 -0.43 -3.59 16 6 C -0.03 -0.74 6.85 -82.53 -0.56 -1.30 16 7 C 0.60 13.76 7.63 -12.11 -0.09 13.66 16 8 O -0.55 -13.10 16.51 5.37 0.09 -13.01 16 9 N -0.58 -12.99 2.46 -177.37 -0.44 -13.42 16 10 C 0.23 5.73 4.77 -5.20 -0.02 5.71 16 11 C -0.52 -14.08 8.44 -34.44 -0.29 -14.37 16 12 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 13 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 14 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.20 3.75 5.94 -5.19 -0.03 3.72 16 20 C -0.02 -0.34 6.90 -35.63 -0.25 -0.59 16 21 C -0.20 -3.39 10.81 -39.70 -0.43 -3.82 16 22 C -0.22 -3.20 10.91 -39.70 -0.43 -3.63 16 23 C -0.05 -0.74 12.09 29.42 0.36 -0.38 16 24 O -0.17 -3.06 10.65 5.71 0.06 -3.00 16 25 N -0.26 -5.80 8.04 33.29 0.27 -5.53 16 26 O 0.12 2.33 11.18 17.24 0.19 2.52 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 36 H 0.06 1.67 5.41 -51.93 -0.28 1.38 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.12 2.02 8.07 -51.93 -0.42 1.60 16 39 H 0.09 1.75 7.37 -51.93 -0.38 1.36 16 40 H 0.15 2.43 8.06 -52.48 -0.42 2.01 16 41 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.20 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -32.48 366.25 -6.76 -39.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.69 Total: 2.18 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.47 Total: -6.52 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.57 Total: -43.18 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.34 Total: -13.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.48 -6.76 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294609950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.297 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds