Wall clock time and date at job start Tue Mar 31 2020 13:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47542 * 2 1 4 4 C 1.50697 * 109.47576 * 179.97438 * 3 2 1 5 5 C 1.35322 * 126.66350 * 89.99949 * 4 3 2 6 6 C 1.42267 * 103.91856 * 179.73931 * 5 4 3 7 7 C 1.48338 * 126.93764 * 180.26007 * 6 5 4 8 8 O 1.21496 * 119.99494 * 353.56185 * 7 6 5 9 9 N 1.34774 * 120.00130 * 173.55503 * 7 6 5 10 10 C 1.46497 * 119.99949 * 4.05335 * 9 7 6 11 11 C 1.50696 * 109.47591 * 83.33383 * 10 9 7 12 12 H 1.08005 * 119.99828 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00332 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99850 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00178 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47156 * 89.99635 * 15 13 11 17 17 H 1.48494 * 109.47212 * 209.99860 * 15 13 11 18 18 H 1.48502 * 109.46811 * 329.99728 * 15 13 11 19 19 C 1.46504 * 119.99937 * 184.04253 * 9 7 6 20 20 C 1.50701 * 109.46793 * 90.00702 * 19 9 7 21 21 C 1.34511 * 125.79285 * 90.00002 * 20 19 9 22 22 C 1.41381 * 106.84653 * 180.02562 * 21 20 19 23 23 C 1.34521 * 106.83618 * 359.97438 * 22 21 20 24 24 O 1.34299 * 108.42027 * 359.74224 * 23 22 21 25 25 N 1.30983 * 106.12790 * 0.25735 * 6 5 4 26 26 O 1.20900 * 111.43890 * 0.02562 * 25 6 5 27 27 H 1.09001 * 109.47041 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47298 * 299.99944 * 1 2 3 29 29 H 1.08999 * 109.46975 * 59.99695 * 1 2 3 30 30 H 1.08999 * 109.47120 * 239.99571 * 2 1 3 31 31 H 1.08999 * 109.46975 * 120.00305 * 2 1 3 32 32 H 1.08999 * 109.47263 * 59.99659 * 3 2 1 33 33 H 1.08999 * 109.47234 * 300.00146 * 3 2 1 34 34 H 1.08002 * 128.03635 * 359.97438 * 5 4 3 35 35 H 1.09001 * 109.47154 * 203.33134 * 10 9 7 36 36 H 1.08997 * 109.47208 * 323.32908 * 10 9 7 37 37 H 0.96998 * 120.00275 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.46863 * 210.00512 * 19 9 7 39 39 H 1.09000 * 109.47239 * 330.00624 * 19 9 7 40 40 H 1.08003 * 126.57883 * 359.95782 * 21 20 19 41 41 H 1.07999 * 126.58449 * 179.97438 * 22 21 20 42 42 H 1.08003 * 125.78669 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3555 1.4422 -1.0845 6 6 5.6673 1.4486 -0.5339 7 6 6.9481 1.4565 -1.2822 8 8 6.9458 1.3401 -2.4916 9 7 8.1143 1.5930 -0.6205 10 6 8.1242 1.6442 0.8435 11 6 8.1003 0.2422 1.3955 12 1 8.0794 -0.6026 0.7230 13 6 8.1041 0.0380 2.7590 14 7 8.1290 1.0667 3.5779 15 14 8.0737 -1.7000 3.4433 16 1 9.4655 -2.1881 3.6165 17 1 7.3811 -1.7028 4.7567 18 1 7.3506 -2.5906 2.5003 19 6 9.3721 1.6898 -1.3654 20 6 9.6658 3.1364 -1.6694 21 6 10.3684 3.9773 -0.8893 22 6 10.3973 5.2249 -1.5538 23 6 9.7110 5.0716 -2.7005 24 8 9.2754 3.8030 -2.7681 25 7 5.5159 1.4462 0.7671 26 8 4.3470 1.4390 1.0759 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 4.0710 1.4417 -2.1264 35 1 9.0263 2.1531 1.1832 36 1 7.2468 2.1877 1.1940 37 1 8.1320 0.9230 4.5372 38 1 10.1819 1.2727 -0.7668 39 1 9.2858 1.1327 -2.2983 40 1 10.8223 3.7444 0.0626 41 1 10.8780 6.1277 -1.2072 42 1 9.5431 5.8375 -3.4433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294609950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:32 Heat of formation + Delta-G solvation = 26.943529 kcal Electronic energy + Delta-G solvation = -26796.093429 eV Core-core repulsion = 22939.083063 eV Total energy + Delta-G solvation = -3857.010367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.98678 -43.51321 -40.75164 -37.12951 -36.50725 -34.96720 -34.61154 -33.90494 -32.61651 -31.68294 -29.22066 -27.84191 -27.56586 -25.43620 -24.54811 -23.50124 -22.66207 -22.47399 -21.55050 -20.11138 -18.94093 -18.59848 -18.27797 -18.20537 -17.72403 -17.42739 -16.57026 -16.39176 -16.17929 -15.96280 -15.48723 -15.08501 -14.57414 -14.49551 -14.35121 -14.08817 -14.01551 -13.76493 -13.63955 -13.56458 -13.08703 -13.05378 -12.75641 -12.61721 -12.46521 -12.21761 -12.13277 -11.84450 -11.80428 -11.49679 -11.37659 -11.34747 -10.87877 -10.57201 -10.26795 -9.80664 -9.47583 -8.17664 -6.28221 0.29849 0.65868 0.76282 1.36726 1.38364 1.47263 1.60807 1.98664 2.05887 2.21672 2.34948 2.41483 3.09229 3.15324 3.51819 3.76358 3.95643 4.04585 4.11230 4.14795 4.18242 4.20500 4.33123 4.36453 4.46759 4.67395 4.73479 4.82022 4.86467 4.87901 4.98508 5.01159 5.04517 5.14195 5.28620 5.31539 5.35420 5.50873 5.55664 5.59999 5.72347 6.06318 6.16348 6.30049 6.73718 6.95397 7.34612 7.39689 8.90214 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.005172 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.840096 B = 5411.967723 C = 7735.886059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.031 4.031 4 C -0.034 4.034 5 C -0.191 4.191 6 C -0.064 4.064 7 C 0.591 3.409 8 O -0.569 6.569 9 N -0.582 5.582 10 C 0.249 3.751 11 C -0.529 4.529 12 H 0.041 0.959 13 C 0.033 3.967 14 N -0.912 5.912 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.194 3.806 20 C -0.049 4.049 21 C -0.202 4.202 22 C -0.224 4.224 23 C -0.040 4.040 24 O -0.191 6.191 25 N -0.300 5.300 26 O 0.116 5.884 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.193 0.807 35 H 0.023 0.977 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.149 0.851 41 H 0.175 0.825 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 5.034 -8.231 13.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.069 4.069 4 C -0.097 4.097 5 C -0.213 4.213 6 C -0.221 4.221 7 C 0.379 3.621 8 O -0.449 6.449 9 N -0.312 5.312 10 C 0.129 3.871 11 C -0.567 4.567 12 H 0.059 0.941 13 C -0.168 4.168 14 N -0.552 5.552 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.205 1.205 19 C 0.072 3.928 20 C -0.100 4.100 21 C -0.222 4.222 22 C -0.243 4.243 23 C -0.107 4.107 24 O -0.087 6.087 25 N 0.003 4.997 26 O 0.036 5.964 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.210 0.790 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.167 0.833 41 H 0.193 0.807 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.224 4.883 -7.889 12.398 hybrid contribution 0.300 -0.804 0.135 0.868 sum -7.924 4.079 -7.753 11.813 Atomic orbital electron populations 1.21727 0.93156 1.02473 1.02966 1.21562 0.97621 0.94726 1.02330 1.20458 0.80173 0.99500 1.06721 1.25242 0.97701 1.02216 0.84542 1.22548 0.88498 1.07941 1.02330 1.23488 0.96935 1.10988 0.90703 1.17275 0.82822 0.76274 0.85744 1.90654 1.87369 1.53142 1.13697 1.48237 1.05073 1.68385 1.09484 1.19438 0.97990 0.97176 0.72539 1.21320 1.51738 0.91893 0.91781 0.94066 1.25444 0.94362 1.00156 0.96852 1.70003 1.50369 1.31315 1.03463 0.85719 0.78469 0.80651 0.77775 1.19545 1.20354 1.20474 1.19827 0.86971 0.87983 0.98048 1.22915 1.02578 0.96586 0.87913 1.21917 1.04274 0.94238 1.01751 1.22170 1.06073 0.99479 0.96564 1.24933 0.99830 0.84347 1.01608 1.84070 1.62020 1.23083 1.39544 1.74982 0.96003 1.13265 1.15456 1.84890 1.11641 1.65025 1.34868 0.92277 0.91737 0.91243 0.91868 0.92760 0.87714 0.85887 0.78953 0.95936 0.93639 0.92518 0.85902 0.88965 0.83295 0.80710 0.74148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 3 C -0.03 -0.54 5.78 29.84 0.17 -0.37 16 4 C -0.03 -1.02 6.73 25.01 0.17 -0.85 16 5 C -0.19 -6.46 10.93 22.60 0.25 -6.21 16 6 C -0.06 -2.82 6.85 42.96 0.29 -2.52 16 7 C 0.59 28.08 7.63 86.93 0.66 28.74 16 8 O -0.57 -27.59 16.51 -3.70 -0.06 -27.65 16 9 N -0.58 -27.22 2.46 -833.37 -2.05 -29.27 16 10 C 0.25 12.94 4.77 85.63 0.41 13.35 16 11 C -0.53 -29.21 8.44 25.60 0.22 -28.99 16 12 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 13 C 0.03 1.80 5.46 84.66 0.46 2.26 16 14 N -0.91 -52.26 13.29 21.45 0.28 -51.98 16 15 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 19 C 0.19 7.75 5.94 85.63 0.51 8.26 16 20 C -0.05 -1.85 6.90 24.83 0.17 -1.68 16 21 C -0.20 -6.89 10.81 22.19 0.24 -6.65 16 22 C -0.22 -6.22 10.91 22.19 0.24 -5.98 16 23 C -0.04 -1.07 12.09 66.97 0.81 -0.26 16 24 O -0.19 -6.91 10.65 -2.48 -0.03 -6.94 16 25 N -0.30 -13.95 8.04 -49.52 -0.40 -14.35 16 26 O 0.12 4.51 11.18 71.85 0.80 5.31 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.19 5.45 8.06 -2.91 -0.02 5.42 16 35 H 0.02 1.22 8.02 -2.39 -0.02 1.20 16 36 H 0.05 2.57 5.41 -2.39 -0.01 2.55 16 37 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.12 4.54 8.07 -2.39 -0.02 4.52 16 39 H 0.09 3.62 7.37 -2.39 -0.02 3.61 16 40 H 0.15 4.97 8.06 -2.91 -0.02 4.94 16 41 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.24 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -72.39 366.25 7.11 -65.29 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.03 Total: 17.53 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.50 Total: -3.95 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -2.16 Total: -95.60 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: 0.72 Total: -29.28 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.39 7.11 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294609950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.230 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds