Wall clock time and date at job start Tue Mar 31 2020 12:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48508 * 109.47227 * 240.00243 * 3 2 1 5 5 H 1.48501 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47420 * 120.00228 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 N 1.46505 * 109.46950 * 179.97438 * 18 16 15 20 20 C 1.45751 * 117.94554 * 269.73529 * 19 18 16 21 21 C 1.53105 * 110.37964 * 160.74788 * 20 19 18 22 22 C 1.53340 * 108.53189 * 51.11972 * 21 20 19 23 23 C 1.53077 * 108.42153 * 292.30677 * 22 21 20 24 24 C 1.33358 * 117.94279 * 90.00678 * 19 18 16 25 25 O 1.21281 * 118.24741 * 2.23456 * 24 19 18 26 26 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 27 27 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 29 29 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 30 30 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 31 31 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 32 32 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 33 33 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 34 34 H 1.08996 * 109.30136 * 281.23916 * 20 19 18 35 35 H 1.09003 * 109.30068 * 40.62022 * 20 19 18 36 36 H 1.09000 * 109.80927 * 291.32055 * 21 20 19 37 37 H 1.09008 * 109.67628 * 170.83102 * 21 20 19 38 38 H 1.09002 * 109.67713 * 172.57564 * 22 21 20 39 39 H 1.09000 * 109.70692 * 52.05559 * 22 21 20 40 40 H 1.08994 * 109.39910 * 288.76995 * 23 22 21 41 41 H 1.08999 * 109.32874 * 168.98445 * 23 22 21 42 42 H 1.08007 * 120.06845 * 359.94828 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2126 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 7 8.5233 -6.5373 0.1704 20 6 9.0759 -6.2750 1.4933 21 6 9.3001 -7.5884 2.2475 22 6 10.0993 -8.5375 1.3464 23 6 9.2161 -8.9383 0.1621 24 6 8.5976 -7.7149 -0.4510 25 8 8.1414 -7.8025 -1.5714 26 6 3.4347 -3.4275 -0.3479 27 1 -0.4850 0.8401 -0.0004 28 1 0.3930 -4.8051 0.1919 29 1 1.7209 -6.8641 -0.0238 30 1 4.1428 -6.7338 -0.4370 31 1 5.9216 -3.7984 -1.2401 32 1 7.9677 -5.5581 -1.5995 33 1 8.2900 -4.4889 -0.2135 34 1 10.0245 -5.7484 1.3896 35 1 8.3812 -5.6520 2.0568 36 1 8.3399 -8.0409 2.4950 37 1 9.8599 -7.3951 3.1627 38 1 10.3832 -9.4263 1.9099 39 1 10.9941 -8.0324 0.9826 40 1 8.4286 -9.6076 0.5080 41 1 9.8239 -9.4496 -0.5844 42 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298564630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:16 Heat of formation + Delta-G solvation = -91.571622 kcal Electronic energy + Delta-G solvation = -26100.622165 eV Core-core repulsion = 22238.472596 eV Total energy + Delta-G solvation = -3862.149569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02134 -41.15285 -40.17529 -38.16057 -37.48025 -35.69712 -35.04946 -34.23878 -31.29906 -30.68676 -30.45092 -28.71057 -27.27648 -25.38202 -24.02639 -23.54211 -22.97143 -21.53068 -19.85492 -19.69893 -19.30476 -18.40228 -17.83956 -17.61004 -16.99396 -16.86424 -16.56626 -16.34149 -15.89703 -15.73952 -15.51108 -15.23226 -15.13462 -14.75484 -14.53179 -14.33618 -14.20747 -14.16184 -13.59322 -13.37782 -13.10248 -12.80674 -12.71633 -12.67193 -12.42664 -12.24270 -12.13923 -11.85789 -11.83032 -11.55155 -11.29125 -11.10734 -10.77139 -10.72673 -9.82560 -9.39495 -8.91771 -8.46524 -6.15844 0.34741 0.64935 1.36611 1.41414 1.46716 1.53299 1.55595 1.83140 2.18025 2.24148 2.81371 3.14911 3.45942 3.57487 3.60735 3.83506 3.90632 3.93315 4.09142 4.16098 4.27553 4.32740 4.40594 4.51186 4.55129 4.57811 4.61990 4.70632 4.85856 4.93382 4.97501 5.04614 5.09685 5.13607 5.24640 5.35609 5.38425 5.44185 5.62309 5.63449 6.00450 6.12118 6.36098 6.40859 6.97323 7.02895 7.09201 7.76044 8.76241 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.002791 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.871472 B =10029.094432 C =10787.297157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.136 3.864 11 C -0.213 4.213 12 C -0.053 4.053 13 C -0.203 4.203 14 C 0.189 3.811 15 N -0.660 5.660 16 C 0.494 3.506 17 O -0.551 6.551 18 C 0.092 3.908 19 N -0.585 5.585 20 C 0.107 3.893 21 C -0.136 4.136 22 C -0.114 4.114 23 C -0.132 4.132 24 C 0.511 3.489 25 O -0.603 6.603 26 C -0.257 4.257 27 H 0.273 0.727 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.119 0.881 31 H 0.425 0.575 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.270 -11.506 2.851 27.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.084 3.916 11 C -0.233 4.233 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.094 3.906 15 N -0.307 5.307 16 C 0.282 3.718 17 O -0.427 6.427 18 C -0.034 4.034 19 N -0.315 5.315 20 C -0.014 4.014 21 C -0.173 4.173 22 C -0.151 4.151 23 C -0.171 4.171 24 C 0.302 3.698 25 O -0.485 6.485 26 C -0.278 4.278 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.168 0.832 30 H 0.137 0.863 31 H 0.264 0.736 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 24.431 -12.017 2.863 27.376 hybrid contribution -0.465 1.098 -0.347 1.242 sum 23.965 -10.918 2.516 26.455 Atomic orbital electron populations 1.70186 1.08127 1.28948 1.48507 1.26622 0.96834 1.02815 0.95698 0.84638 0.77403 0.74076 0.80046 1.17759 1.19917 1.18131 1.21780 0.92547 0.81286 1.53464 0.87890 1.83991 1.35546 1.12495 1.81047 1.19587 0.90854 0.87960 0.93179 1.20462 1.00666 0.90036 1.12132 1.20877 0.92905 0.97626 0.95702 1.20769 0.94933 0.96162 1.10489 1.17430 0.83214 0.92948 0.97022 1.43470 1.04231 1.30658 1.52376 1.22052 0.90464 0.80184 0.79145 1.90695 1.78084 1.38009 1.35957 1.21486 0.86576 0.93959 1.01427 1.47100 1.54884 1.10199 1.19364 1.21780 0.99654 0.99221 0.80776 1.21929 1.01211 0.94501 0.99675 1.21662 0.97759 1.00977 0.94729 1.21699 1.01199 0.93820 1.00381 1.20930 0.78208 0.85443 0.85242 1.90695 1.50766 1.85013 1.22025 1.20843 0.94001 0.98132 1.14861 0.91799 0.86162 0.83182 0.86320 0.73629 0.86050 0.82766 0.88117 0.91245 0.92714 0.87073 0.88507 0.89655 0.88485 0.87314 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.88 13.67 21.61 0.30 -55.58 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 3 Si 1.02 41.46 29.55 68.60 2.03 43.48 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.41 -23.63 9.44 67.92 0.64 -22.99 16 8 H 0.10 5.29 5.30 -2.91 -0.02 5.27 16 9 O -0.22 -13.43 9.76 -22.79 -0.22 -13.65 16 10 C 0.14 6.84 6.64 22.56 0.15 6.99 16 11 C -0.21 -9.51 9.99 22.41 0.22 -9.29 16 12 C -0.05 -2.02 10.03 22.23 0.22 -1.79 16 13 C -0.20 -7.97 8.65 22.43 0.19 -7.77 16 14 C 0.19 7.22 6.27 38.14 0.24 7.46 16 15 N -0.66 -19.03 5.34 -303.55 -1.62 -20.65 16 16 C 0.49 13.97 7.62 87.66 0.67 14.64 16 17 O -0.55 -20.01 14.13 -3.08 -0.04 -20.05 16 18 C 0.09 1.72 5.70 85.63 0.49 2.21 16 19 N -0.58 -11.13 2.30 -830.63 -1.91 -13.04 16 20 C 0.11 1.29 6.32 86.56 0.55 1.83 16 21 C -0.14 -1.33 6.03 30.74 0.19 -1.14 16 22 C -0.11 -0.91 6.03 30.73 0.19 -0.72 16 23 C -0.13 -1.96 6.03 29.71 0.18 -1.78 16 24 C 0.51 11.92 7.44 87.71 0.65 12.57 16 25 O -0.60 -19.51 16.18 -3.03 -0.05 -19.56 16 26 C -0.26 -11.24 9.04 22.51 0.20 -11.03 16 27 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 28 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 29 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.12 4.71 6.43 -2.91 -0.02 4.69 16 31 H 0.43 8.97 8.82 -92.71 -0.82 8.15 16 32 H 0.12 2.33 7.13 -2.39 -0.02 2.32 16 33 H 0.15 1.46 8.01 -2.39 -0.02 1.44 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 37 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.48 8.13 -2.39 -0.02 0.46 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 5.63 5.71 -2.91 -0.02 5.61 16 Total: -1.00 -84.27 353.89 3.96 -80.30 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.24 Total: 30.33 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.25 Total: -11.57 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -3.24 Total: -89.27 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.31 Total: -53.27 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -84.27 3.96 -80.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298564630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.271 kcal (2) G-P(sol) polarization free energy of solvation -84.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds