Wall clock time and date at job start Tue Mar 31 2020 13:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.55816 * 2 1 4 4 C 1.52995 * 117.50132 * 214.31322 * 2 1 3 5 5 C 1.52997 * 117.50012 * 145.68713 * 2 1 3 6 6 H 1.08995 * 117.51724 * 0.02562 * 5 2 1 7 7 N 1.46499 * 117.49912 * 214.97827 * 5 2 1 8 8 C 1.34783 * 120.00011 * 154.98808 * 7 5 2 9 9 O 1.21360 * 119.99423 * 0.02562 * 8 7 5 10 10 C 1.49350 * 120.00066 * 180.02562 * 8 7 5 11 11 O 1.21378 * 120.00073 * 359.97438 * 10 8 7 12 12 N 1.34769 * 119.99978 * 180.02562 * 10 8 7 13 13 C 1.39725 * 120.00149 * 185.44820 * 12 10 8 14 14 C 1.39020 * 120.04247 * 214.71246 * 13 12 10 15 15 C 1.38141 * 120.06367 * 180.02562 * 14 13 12 16 16 C 1.38180 * 120.14321 * 0.02562 * 15 14 13 17 17 C 1.38917 * 120.08321 * 359.97438 * 16 15 14 18 18 O 1.35756 * 120.03368 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00027 * 354.38212 * 18 17 16 20 20 H 1.08002 * 119.99795 * 354.64349 * 19 18 17 21 21 C 1.38650 * 120.00221 * 174.64006 * 19 18 17 22 22 N 1.31561 * 120.00027 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99956 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47659 * 89.99505 * 23 21 19 25 25 H 1.48502 * 109.47286 * 209.99809 * 23 21 19 26 26 H 1.48504 * 109.47149 * 329.99233 * 23 21 19 27 27 C 1.38758 * 119.93964 * 0.02562 * 17 16 15 28 28 H 1.09005 * 109.46858 * 274.30691 * 1 2 3 29 29 H 1.08993 * 109.47195 * 34.30935 * 1 2 3 30 30 H 1.09001 * 109.46991 * 154.31032 * 1 2 3 31 31 H 1.09004 * 109.46840 * 205.68829 * 3 2 1 32 32 H 1.08998 * 109.47392 * 325.69038 * 3 2 1 33 33 H 1.08996 * 109.46986 * 85.69040 * 3 2 1 34 34 H 1.09005 * 117.50121 * 145.01733 * 4 2 1 35 35 H 1.09005 * 117.49700 * 359.97438 * 4 2 1 36 36 H 0.96999 * 120.00063 * 334.99096 * 7 5 2 37 37 H 0.96999 * 120.00212 * 5.44039 * 12 10 8 38 38 H 1.08001 * 119.96708 * 0.04361 * 14 13 12 39 39 H 1.07997 * 119.92903 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.96136 * 179.97438 * 16 15 14 41 41 H 0.96994 * 120.00130 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.07592 * 179.72002 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8588 1.2681 7 7 3.4933 -0.7905 1.4414 8 6 3.8988 -1.5163 2.5022 9 8 3.2229 -2.4439 2.8968 10 6 5.1797 -1.1791 3.1922 11 8 5.8559 -0.2517 2.7972 12 7 5.5854 -1.9052 4.2526 13 6 6.7227 -1.5218 4.9679 14 6 7.5573 -2.4879 5.5182 15 6 8.6816 -2.1093 6.2260 16 6 8.9801 -0.7701 6.3899 17 6 8.1503 0.2003 5.8425 18 8 8.4448 1.5157 6.0036 19 6 9.4893 1.8158 6.8016 20 1 9.9949 1.0325 7.3468 21 6 9.9145 3.1300 6.9223 22 7 10.9334 3.4229 7.7013 23 14 9.0397 4.4849 5.9798 24 1 7.9326 5.0282 6.8070 25 1 10.0026 5.5711 5.6665 26 1 8.4885 3.9325 4.7163 27 6 7.0201 -0.1761 5.1309 28 1 -0.3633 0.0772 1.0248 29 1 -0.3633 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3085 -0.4455 32 1 1.5811 2.0743 -0.5792 33 1 2.2772 1.7413 1.0247 34 1 3.1716 -0.8750 -1.2683 35 1 1.6113 -1.8586 -1.2680 36 1 4.0336 -0.0493 1.1258 37 1 5.0877 -2.6939 4.5193 38 1 7.3266 -3.5354 5.3920 39 1 9.3286 -2.8616 6.6523 40 1 9.8596 -0.4774 6.9441 41 1 11.2310 4.3422 7.7854 42 1 6.3711 0.5765 4.7083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299029565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:23 Heat of formation + Delta-G solvation = -40.129195 kcal Electronic energy + Delta-G solvation = -25549.704995 eV Core-core repulsion = 21689.786137 eV Total energy + Delta-G solvation = -3859.918858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06243 -39.75411 -38.85815 -38.10861 -36.81190 -34.56193 -33.51675 -32.40218 -29.87010 -29.44196 -28.85934 -27.94841 -25.62298 -25.10856 -22.79214 -21.88647 -21.23778 -20.40460 -19.71429 -18.68957 -18.04588 -17.43385 -17.04934 -16.05726 -15.93206 -15.50803 -15.28885 -14.81405 -14.72262 -14.31724 -14.16292 -14.11232 -13.84277 -13.62668 -13.38068 -12.99367 -12.95063 -12.67544 -12.47485 -12.32368 -12.20054 -11.81034 -11.74595 -11.63437 -11.50878 -11.18170 -10.99861 -10.88400 -10.27207 -10.21644 -9.99959 -9.72612 -9.37821 -9.15139 -8.88861 -7.92581 -7.39239 -6.43491 -4.10318 1.09870 1.95465 2.14912 2.19714 3.01232 3.23407 3.25704 3.38618 3.41316 3.43334 4.15752 4.22986 4.24552 4.35980 4.41221 4.44231 4.61514 4.86954 5.07386 5.14976 5.23437 5.32683 5.40710 5.47733 5.49640 5.50922 5.53019 5.65242 5.74074 5.86313 5.94976 5.97081 6.02496 6.15416 6.33503 6.55388 6.79942 6.87314 7.04364 7.24642 7.31297 7.46889 7.60518 7.75950 7.91244 8.01416 8.91636 9.53454 10.63822 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003004 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.065786 B = 9318.100439 C =11028.508393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.132 4.132 3 C -0.124 4.124 4 C -0.181 4.181 5 C 0.081 3.919 6 H 0.142 0.858 7 N -0.672 5.672 8 C 0.518 3.482 9 O -0.518 6.518 10 C 0.501 3.499 11 O -0.492 6.492 12 N -0.636 5.636 13 C 0.169 3.831 14 C -0.220 4.220 15 C -0.058 4.058 16 C -0.227 4.227 17 C 0.174 3.826 18 O -0.212 6.212 19 C -0.389 4.389 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.878 5.878 23 Si 0.903 3.097 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.258 1.258 27 C -0.185 4.185 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.415 0.585 37 H 0.419 0.581 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.280 0.720 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.716 -9.357 -14.269 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.134 4.134 3 C -0.181 4.181 4 C -0.219 4.219 5 C -0.025 4.025 6 H 0.159 0.841 7 N -0.324 5.324 8 C 0.299 3.701 9 O -0.394 6.394 10 C 0.282 3.718 11 O -0.365 6.365 12 N -0.283 5.283 13 C 0.076 3.924 14 C -0.241 4.241 15 C -0.077 4.077 16 C -0.246 4.246 17 C 0.120 3.880 18 O -0.117 6.117 19 C -0.465 4.465 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.515 5.515 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.182 1.182 27 C -0.206 4.206 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.253 0.747 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.694 -8.945 -14.272 24.430 hybrid contribution -0.071 0.530 -0.309 0.617 sum -17.766 -8.416 -14.581 24.475 Atomic orbital electron populations 1.21370 0.91161 1.02339 1.02369 1.22088 0.95589 0.91975 1.03731 1.21388 1.00235 0.93816 1.02638 1.23797 1.02843 1.01219 0.94078 1.21905 0.87492 1.01653 0.91425 0.84094 1.45097 1.22936 1.34236 1.30120 1.20072 0.86278 0.82773 0.81016 1.90754 1.55664 1.28644 1.64298 1.20043 0.86298 0.83867 0.81594 1.90861 1.54258 1.28058 1.63303 1.43015 1.27319 1.29779 1.28168 1.17120 0.87325 0.92794 0.95160 1.20378 0.97922 0.97381 1.08404 1.20590 0.95338 0.95400 0.96397 1.21348 1.03187 0.92513 1.07596 1.18803 0.92348 0.84355 0.92450 1.83595 1.47612 1.19415 1.61045 1.20781 1.08209 0.95863 1.21610 0.87488 1.24461 0.95419 0.97474 0.96533 1.69644 1.24303 1.20808 1.36765 0.86203 0.79295 0.80330 0.81303 1.19821 1.20757 1.18166 1.19960 0.99663 0.94292 1.06710 0.91836 0.91674 0.92106 0.92143 0.91429 0.91618 0.88139 0.87659 0.74719 0.74379 0.86801 0.86444 0.84612 0.90997 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.85 37.16 0.37 -0.29 16 2 C -0.13 -0.92 2.70 -154.51 -0.42 -1.33 16 3 C -0.12 -0.85 8.85 37.16 0.33 -0.53 16 4 C -0.18 -1.21 9.75 -26.73 -0.26 -1.47 16 5 C 0.08 0.70 6.13 -67.93 -0.42 0.28 16 6 H 0.14 1.29 7.40 -51.93 -0.38 0.90 16 7 N -0.67 -7.00 5.34 -54.27 -0.29 -7.29 16 8 C 0.52 6.62 7.89 -11.63 -0.09 6.53 16 9 O -0.52 -7.24 16.05 5.49 0.09 -7.15 16 10 C 0.50 7.49 7.61 -11.64 -0.09 7.40 16 11 O -0.49 -8.72 14.27 5.47 0.08 -8.64 16 12 N -0.64 -9.26 5.32 -10.31 -0.05 -9.32 16 13 C 0.17 2.98 6.24 -83.77 -0.52 2.46 16 14 C -0.22 -3.58 9.96 -39.33 -0.39 -3.97 16 15 C -0.06 -1.02 10.03 -39.64 -0.40 -1.42 16 16 C -0.23 -4.82 9.13 -39.35 -0.36 -5.18 16 17 C 0.17 4.07 6.64 -39.14 -0.26 3.81 16 18 O -0.21 -5.68 8.58 0.04 0.00 -5.68 16 19 C -0.39 -10.95 9.90 30.88 0.31 -10.65 16 20 H 0.11 3.04 5.52 -52.49 -0.29 2.75 16 21 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 22 N -0.88 -25.26 13.96 55.48 0.77 -24.49 16 23 Si 0.90 21.88 28.62 -169.99 -4.86 17.01 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 27 C -0.19 -3.90 8.59 -39.19 -0.34 -4.24 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 30 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 31 H 0.06 0.40 7.61 -51.93 -0.40 0.01 16 32 H 0.07 0.40 7.92 -51.93 -0.41 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.66 8.05 -51.93 -0.42 0.25 16 35 H 0.11 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.42 4.10 7.16 -40.82 -0.29 3.81 16 37 H 0.42 4.97 8.30 -40.82 -0.34 4.64 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.14 3.00 5.70 -52.48 -0.30 2.70 16 41 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.75 6.54 -52.49 -0.34 2.41 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -31.58 361.01 -6.70 -38.28 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.24 Total: 8.70 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.64 Total: -6.87 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.43 Total: -41.10 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.17 Total: -21.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.58 -6.70 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299029565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.850 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds