Wall clock time and date at job start Tue Mar 31 2020 13:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.55816 * 2 1 4 4 C 1.52995 * 117.50132 * 214.31322 * 2 1 3 5 5 C 1.52997 * 117.50012 * 145.68713 * 2 1 3 6 6 H 1.08995 * 117.51724 * 0.02562 * 5 2 1 7 7 N 1.46499 * 117.49912 * 214.97827 * 5 2 1 8 8 C 1.34783 * 120.00011 * 154.98808 * 7 5 2 9 9 O 1.21360 * 119.99423 * 0.02562 * 8 7 5 10 10 C 1.49350 * 120.00066 * 180.02562 * 8 7 5 11 11 O 1.21378 * 120.00073 * 359.97438 * 10 8 7 12 12 N 1.34769 * 119.99978 * 180.02562 * 10 8 7 13 13 C 1.39725 * 120.00149 * 185.44820 * 12 10 8 14 14 C 1.39020 * 120.04247 * 214.71246 * 13 12 10 15 15 C 1.38141 * 120.06367 * 180.02562 * 14 13 12 16 16 C 1.38180 * 120.14321 * 0.02562 * 15 14 13 17 17 C 1.38917 * 120.08321 * 359.97438 * 16 15 14 18 18 O 1.35756 * 120.03368 * 180.02562 * 17 16 15 19 19 C 1.34828 * 117.00027 * 354.38212 * 18 17 16 20 20 H 1.08002 * 119.99795 * 354.64349 * 19 18 17 21 21 C 1.38650 * 120.00221 * 174.64006 * 19 18 17 22 22 N 1.31561 * 120.00027 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99956 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47659 * 89.99505 * 23 21 19 25 25 H 1.48502 * 109.47286 * 209.99809 * 23 21 19 26 26 H 1.48504 * 109.47149 * 329.99233 * 23 21 19 27 27 C 1.38758 * 119.93964 * 0.02562 * 17 16 15 28 28 H 1.09005 * 109.46858 * 274.30691 * 1 2 3 29 29 H 1.08993 * 109.47195 * 34.30935 * 1 2 3 30 30 H 1.09001 * 109.46991 * 154.31032 * 1 2 3 31 31 H 1.09004 * 109.46840 * 205.68829 * 3 2 1 32 32 H 1.08998 * 109.47392 * 325.69038 * 3 2 1 33 33 H 1.08996 * 109.46986 * 85.69040 * 3 2 1 34 34 H 1.09005 * 117.50121 * 145.01733 * 4 2 1 35 35 H 1.09005 * 117.49700 * 359.97438 * 4 2 1 36 36 H 0.96999 * 120.00063 * 334.99096 * 7 5 2 37 37 H 0.96999 * 120.00212 * 5.44039 * 12 10 8 38 38 H 1.08001 * 119.96708 * 0.04361 * 14 13 12 39 39 H 1.07997 * 119.92903 * 180.02562 * 15 14 13 40 40 H 1.08003 * 119.96136 * 179.97438 * 16 15 14 41 41 H 0.96994 * 120.00130 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.07592 * 179.72002 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6116 -1.8588 1.2681 7 7 3.4933 -0.7905 1.4414 8 6 3.8988 -1.5163 2.5022 9 8 3.2229 -2.4439 2.8968 10 6 5.1797 -1.1791 3.1922 11 8 5.8559 -0.2517 2.7972 12 7 5.5854 -1.9052 4.2526 13 6 6.7227 -1.5218 4.9679 14 6 7.5573 -2.4879 5.5182 15 6 8.6816 -2.1093 6.2260 16 6 8.9801 -0.7701 6.3899 17 6 8.1503 0.2003 5.8425 18 8 8.4448 1.5157 6.0036 19 6 9.4893 1.8158 6.8016 20 1 9.9949 1.0325 7.3468 21 6 9.9145 3.1300 6.9223 22 7 10.9334 3.4229 7.7013 23 14 9.0397 4.4849 5.9798 24 1 7.9326 5.0282 6.8070 25 1 10.0026 5.5711 5.6665 26 1 8.4885 3.9325 4.7163 27 6 7.0201 -0.1761 5.1309 28 1 -0.3633 0.0772 1.0248 29 1 -0.3633 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3085 -0.4455 32 1 1.5811 2.0743 -0.5792 33 1 2.2772 1.7413 1.0247 34 1 3.1716 -0.8750 -1.2683 35 1 1.6113 -1.8586 -1.2680 36 1 4.0336 -0.0493 1.1258 37 1 5.0877 -2.6939 4.5193 38 1 7.3266 -3.5354 5.3920 39 1 9.3286 -2.8616 6.6523 40 1 9.8596 -0.4774 6.9441 41 1 11.2310 4.3422 7.7854 42 1 6.3711 0.5765 4.7083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299029565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:22 Heat of formation + Delta-G solvation = -61.678174 kcal Electronic energy + Delta-G solvation = -25550.639429 eV Core-core repulsion = 21689.786137 eV Total energy + Delta-G solvation = -3860.853292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23180 -41.01260 -40.20466 -39.05224 -38.38982 -35.89556 -34.50978 -34.40969 -31.44997 -30.47700 -29.96105 -28.45436 -27.32093 -26.53806 -24.04045 -23.12591 -22.52954 -21.56607 -20.49471 -20.01617 -19.67956 -19.01274 -18.11563 -17.21251 -17.07442 -16.89872 -16.86967 -16.27945 -15.75957 -15.73361 -15.45385 -15.29229 -15.13674 -14.69215 -14.43308 -14.29402 -14.22661 -14.00025 -13.61167 -13.35870 -13.21154 -13.11448 -12.80837 -12.74240 -12.65655 -12.55159 -12.23897 -12.12033 -12.03561 -11.50946 -11.42360 -10.94614 -10.88533 -10.71465 -9.89863 -9.49367 -9.02596 -8.51776 -6.24130 -0.11809 0.54568 0.61402 1.06499 1.28993 1.32846 1.49707 1.91322 2.26337 2.35179 2.70929 2.75735 3.01089 3.06837 3.27569 3.56765 3.80047 3.83448 4.04259 4.10491 4.29359 4.33161 4.50452 4.52800 4.62974 4.73021 4.77089 4.78301 4.86698 4.99095 5.00924 5.03378 5.15292 5.24072 5.25217 5.26518 5.34064 5.38343 5.63342 5.71746 5.79787 5.85564 6.12909 6.18505 6.57597 6.75700 6.82867 7.56806 8.59537 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014340 B = 0.003004 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.065786 B = 9318.100439 C =11028.508393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.126 4.126 3 C -0.127 4.127 4 C -0.166 4.166 5 C 0.057 3.943 6 H 0.137 0.863 7 N -0.661 5.661 8 C 0.525 3.475 9 O -0.530 6.530 10 C 0.502 3.498 11 O -0.522 6.522 12 N -0.626 5.626 13 C 0.175 3.825 14 C -0.189 4.189 15 C -0.049 4.049 16 C -0.241 4.241 17 C 0.137 3.863 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.088 0.912 21 C 0.014 3.986 22 N -0.919 5.919 23 Si 0.964 3.036 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.271 1.271 27 C -0.197 4.197 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.418 0.582 37 H 0.435 0.565 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 -11.560 -16.088 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.127 4.127 3 C -0.184 4.184 4 C -0.204 4.204 5 C -0.048 4.048 6 H 0.154 0.846 7 N -0.312 5.312 8 C 0.305 3.695 9 O -0.407 6.407 10 C 0.284 3.716 11 O -0.397 6.397 12 N -0.274 5.274 13 C 0.081 3.919 14 C -0.209 4.209 15 C -0.068 4.068 16 C -0.261 4.261 17 C 0.087 3.913 18 O -0.152 6.152 19 C -0.474 4.474 20 H 0.106 0.894 21 C -0.185 4.185 22 N -0.559 5.559 23 Si 0.786 3.214 24 H -0.189 1.189 25 H -0.189 1.189 26 H -0.195 1.195 27 C -0.218 4.218 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.255 0.745 37 H 0.276 0.724 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.819 -11.197 -16.117 27.891 hybrid contribution 0.419 0.890 0.147 0.995 sum -19.400 -10.306 -15.970 27.159 Atomic orbital electron populations 1.21404 0.90080 1.03357 1.02408 1.22172 0.96350 0.91588 1.02570 1.21426 1.00643 0.94182 1.02142 1.23876 1.03086 1.01118 0.92347 1.22102 0.86922 1.03136 0.92624 0.84574 1.45121 1.23399 1.33493 1.29151 1.19582 0.85344 0.83056 0.81530 1.90753 1.55742 1.29338 1.64905 1.20505 0.86707 0.83038 0.81364 1.90859 1.55335 1.29308 1.64213 1.42939 1.26529 1.30247 1.27686 1.17237 0.88256 0.91742 0.94622 1.20949 0.95739 0.99424 1.04815 1.21035 0.96049 0.94254 0.95434 1.21418 1.02612 0.94220 1.07841 1.19281 0.93896 0.83844 0.94243 1.83538 1.47883 1.21461 1.62368 1.20749 1.08609 0.95864 1.22164 0.89415 1.25188 0.96254 0.99448 0.97567 1.69712 1.25949 1.21588 1.38664 0.85320 0.78650 0.78006 0.79390 1.18941 1.18879 1.19537 1.20013 0.99029 0.95885 1.06906 0.92290 0.90757 0.91047 0.92070 0.90238 0.92778 0.87900 0.85960 0.74455 0.72416 0.81805 0.82354 0.86477 0.90505 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.85 71.98 0.71 -0.34 16 2 C -0.13 -1.49 2.70 -52.18 -0.14 -1.63 16 3 C -0.13 -1.57 8.85 71.98 0.64 -0.93 16 4 C -0.17 -1.81 9.75 30.59 0.30 -1.51 16 5 C 0.06 0.88 6.13 44.99 0.28 1.16 16 6 H 0.14 2.28 7.40 -2.39 -0.02 2.26 16 7 N -0.66 -12.97 5.34 -443.97 -2.37 -15.33 16 8 C 0.52 12.67 7.89 87.24 0.69 13.36 16 9 O -0.53 -13.83 16.05 -3.28 -0.05 -13.89 16 10 C 0.50 14.37 7.61 87.24 0.66 15.03 16 11 O -0.52 -18.41 14.27 -3.33 -0.05 -18.46 16 12 N -0.63 -16.71 5.32 -304.89 -1.62 -18.33 16 13 C 0.18 5.81 6.24 38.20 0.24 6.04 16 14 C -0.19 -5.34 9.96 22.43 0.22 -5.11 16 15 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 16 C -0.24 -10.36 9.13 22.42 0.20 -10.16 16 17 C 0.14 6.65 6.64 22.56 0.15 6.80 16 18 O -0.25 -13.81 8.58 -22.78 -0.20 -14.00 16 19 C -0.40 -23.64 9.90 67.92 0.67 -22.97 16 20 H 0.09 5.35 5.52 -2.91 -0.02 5.34 16 21 C 0.01 0.84 5.49 84.83 0.47 1.31 16 22 N -0.92 -54.95 13.96 21.61 0.30 -54.64 16 23 Si 0.96 46.67 28.62 68.60 1.96 48.63 16 24 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 27 C -0.20 -8.37 8.59 22.52 0.19 -8.18 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 29 H 0.07 0.56 7.92 -2.39 -0.02 0.54 16 30 H 0.07 0.51 7.90 -2.39 -0.02 0.49 16 31 H 0.06 0.74 7.61 -2.38 -0.02 0.72 16 32 H 0.08 0.80 7.92 -2.39 -0.02 0.78 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.11 8.05 -2.38 -0.02 1.09 16 35 H 0.12 0.95 8.05 -2.38 -0.02 0.93 16 36 H 0.42 7.89 7.16 -92.71 -0.66 7.23 16 37 H 0.44 8.85 8.30 -92.71 -0.77 8.08 16 38 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.12 5.44 5.70 -2.91 -0.02 5.42 16 41 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 42 H 0.11 5.08 6.54 -2.91 -0.02 5.07 16 Total: -1.00 -72.09 361.01 3.13 -68.96 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.35 Total: 25.55 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.50 Total: -8.48 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -3.69 Total: -88.31 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.30 Total: -46.35 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.96 Total: 48.63 kcal Total: -72.09 3.13 -68.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299029565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.279 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds