Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.55030 * 2 1 4 4 C 1.52999 * 117.49529 * 214.29631 * 2 1 3 5 5 C 1.52999 * 117.49957 * 145.67106 * 2 1 3 6 6 H 1.08996 * 117.50201 * 214.99782 * 5 2 1 7 7 N 1.46501 * 117.49957 * 0.02562 * 5 2 1 8 8 C 1.34778 * 120.00128 * 204.72602 * 7 5 2 9 9 O 1.21357 * 119.99559 * 0.26933 * 8 7 5 10 10 C 1.49348 * 119.99999 * 180.26996 * 8 7 5 11 11 O 1.21377 * 120.00426 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00000 * 179.97438 * 10 8 7 13 13 C 1.39727 * 120.00116 * 175.49498 * 12 10 8 14 14 C 1.39020 * 120.04017 * 214.86168 * 13 12 10 15 15 C 1.38144 * 120.05659 * 179.74278 * 14 13 12 16 16 C 1.38172 * 120.14389 * 0.56179 * 15 14 13 17 17 C 1.38921 * 120.08843 * 359.69703 * 16 15 14 18 18 O 1.35742 * 120.03640 * 180.02562 * 17 16 15 19 19 C 1.34836 * 116.99823 * 5.36478 * 18 17 16 20 20 H 1.07992 * 120.00069 * 354.96716 * 19 18 17 21 21 C 1.38655 * 119.99944 * 174.96327 * 19 18 17 22 22 N 1.31563 * 119.99918 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00055 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47327 * 89.99919 * 23 21 19 25 25 H 1.48507 * 109.47206 * 210.00314 * 23 21 19 26 26 H 1.48496 * 109.47023 * 329.99608 * 23 21 19 27 27 C 1.38763 * 119.92997 * 0.02562 * 17 16 15 28 28 H 1.09000 * 109.46779 * 274.33010 * 1 2 3 29 29 H 1.09005 * 109.47042 * 34.32718 * 1 2 3 30 30 H 1.09002 * 109.47122 * 154.32981 * 1 2 3 31 31 H 1.09000 * 109.46690 * 205.67286 * 3 2 1 32 32 H 1.09001 * 109.47142 * 325.67074 * 3 2 1 33 33 H 1.08999 * 109.47089 * 85.67262 * 3 2 1 34 34 H 1.09005 * 117.50066 * 145.02263 * 4 2 1 35 35 H 1.08999 * 117.50080 * 359.97438 * 4 2 1 36 36 H 0.97003 * 119.99982 * 24.99516 * 7 5 2 37 37 H 0.97004 * 119.99970 * 355.50498 * 12 10 8 38 38 H 1.08003 * 119.97089 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.92476 * 180.27849 * 15 14 13 40 40 H 1.08003 * 119.96013 * 179.71807 * 16 15 14 41 41 H 0.96999 * 119.99645 * 179.97438 * 22 21 19 42 42 H 1.08004 * 120.06382 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8747 1.2688 7 7 1.3962 -2.1121 1.4416 8 6 1.8779 -2.7949 2.4991 9 8 3.0060 -2.5850 2.8940 10 6 1.0233 -3.8099 3.1847 11 8 -0.1052 -4.0195 2.7900 12 7 1.5052 -4.4931 4.2419 13 6 0.6760 -5.3735 4.9416 14 6 0.8181 -5.5189 6.3168 15 6 -0.0051 -6.3853 7.0097 16 6 -0.9639 -7.1184 6.3373 17 6 -1.1076 -6.9819 4.9623 18 8 -2.0502 -7.7023 4.3027 19 6 -2.8871 -8.4473 5.0529 20 1 -2.7388 -8.5164 6.1203 21 6 -3.9381 -9.1247 4.4537 22 7 -4.1191 -9.0401 3.1533 23 14 -5.0979 -10.1562 5.4929 24 1 -6.2305 -9.3141 5.9547 25 1 -5.6193 -11.2849 4.6806 26 1 -4.3660 -10.6900 6.6696 27 6 -0.2864 -6.1083 4.2637 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8487 -0.5795 30 1 -0.3633 -0.9263 -0.4452 31 1 3.1823 1.3086 -0.4452 32 1 1.5810 2.0742 -0.5796 33 1 2.2767 1.7416 1.0247 34 1 3.1715 -0.8756 -1.2681 35 1 1.6112 -1.8590 -1.2675 36 1 0.4944 -2.2798 1.1259 37 1 2.4277 -4.3735 4.5170 38 1 1.5697 -4.9505 6.8446 39 1 0.1042 -6.4932 8.0788 40 1 -1.6028 -7.7983 6.8813 41 1 -4.8542 -9.5143 2.7341 42 1 -0.3964 -6.0002 3.1947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299029570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = -40.427177 kcal Electronic energy + Delta-G solvation = -25454.491993 eV Core-core repulsion = 21594.560213 eV Total energy + Delta-G solvation = -3859.931780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97503 -39.65790 -38.70503 -38.01445 -36.63657 -34.45777 -33.44019 -32.27104 -29.72864 -29.35488 -28.65292 -27.90389 -25.62516 -25.07663 -22.66862 -21.82410 -21.27141 -20.34121 -19.63975 -18.66376 -18.05334 -17.08411 -16.99707 -16.00043 -15.85806 -15.46077 -15.10726 -14.71352 -14.49257 -14.43141 -14.18557 -14.12284 -13.66396 -13.55403 -13.36100 -12.96388 -12.86124 -12.63111 -12.56375 -12.14709 -11.85625 -11.69277 -11.58941 -11.58336 -11.44823 -11.14622 -11.04459 -10.79382 -10.47003 -10.19915 -9.87856 -9.68287 -9.23307 -9.08602 -8.84029 -7.80854 -7.24058 -6.44561 -4.03791 1.20154 2.04325 2.26243 2.31008 3.08503 3.13294 3.15267 3.18808 3.44848 3.50069 3.96800 4.22204 4.33616 4.41940 4.47080 4.55046 4.66206 5.09497 5.20142 5.27140 5.27673 5.38383 5.46985 5.52481 5.55059 5.57972 5.58489 5.77644 5.78427 5.91335 6.02242 6.04021 6.12324 6.29994 6.53990 6.66286 6.93002 6.97854 7.03287 7.30708 7.40169 7.44606 7.64164 7.72923 7.99681 8.04556 9.00317 9.70336 10.73209 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002611 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.747937 B =10721.799290 C =11932.136331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.115 4.115 4 C -0.181 4.181 5 C 0.081 3.919 6 H 0.141 0.859 7 N -0.672 5.672 8 C 0.518 3.482 9 O -0.520 6.520 10 C 0.499 3.501 11 O -0.489 6.489 12 N -0.636 5.636 13 C 0.167 3.833 14 C -0.229 4.229 15 C -0.058 4.058 16 C -0.241 4.241 17 C 0.166 3.834 18 O -0.172 6.172 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 C -0.185 4.185 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.416 0.584 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.270 0.730 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 16.266 -3.694 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.134 4.134 3 C -0.172 4.172 4 C -0.219 4.219 5 C -0.025 4.025 6 H 0.159 0.841 7 N -0.324 5.324 8 C 0.299 3.701 9 O -0.395 6.395 10 C 0.280 3.720 11 O -0.362 6.362 12 N -0.282 5.282 13 C 0.074 3.926 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.261 4.261 17 C 0.111 3.889 18 O -0.075 6.075 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.206 4.206 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.253 0.747 37 H 0.255 0.745 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.563 16.163 -4.132 20.298 hybrid contribution -0.546 -0.558 0.508 0.932 sum 11.017 15.605 -3.623 19.443 Atomic orbital electron populations 1.21388 0.91507 1.02594 1.02566 1.22089 0.95664 0.91874 1.03821 1.21365 1.00057 0.93475 1.02293 1.23802 1.03086 1.00941 0.94118 1.21898 0.96902 0.92198 0.91453 0.84133 1.45102 1.18432 1.38540 1.30321 1.20091 0.86947 0.82041 0.80983 1.90744 1.18796 1.65713 1.64289 1.20042 0.87324 0.82598 0.82044 1.90868 1.18460 1.64423 1.62427 1.42985 1.15277 1.40587 1.29345 1.17173 0.93517 0.91463 0.90418 1.20307 1.06012 1.07139 0.91528 1.20520 0.93995 0.94675 0.98470 1.21222 1.03879 1.06367 0.94608 1.19101 0.89596 0.89748 0.90471 1.83988 1.37643 1.51299 1.34581 1.21355 1.07459 1.25908 0.92109 0.88925 1.25312 0.97117 0.97803 0.96304 1.70054 1.29985 1.40337 1.09074 0.85698 0.79766 0.78913 0.78961 1.19854 1.20265 1.19162 1.20151 1.00051 0.99590 1.00789 0.91677 0.91471 0.92058 0.92121 0.91700 0.91892 0.87677 0.88064 0.74663 0.74493 0.87046 0.86793 0.85293 0.91984 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 8.85 37.16 0.33 -0.57 16 2 C -0.13 -0.98 2.70 -154.51 -0.42 -1.40 16 3 C -0.11 -0.68 9.85 37.16 0.37 -0.32 16 4 C -0.18 -1.33 9.75 -26.73 -0.26 -1.59 16 5 C 0.08 0.74 6.13 -67.93 -0.42 0.33 16 6 H 0.14 1.35 7.40 -51.93 -0.38 0.97 16 7 N -0.67 -7.49 5.34 -54.27 -0.29 -7.78 16 8 C 0.52 7.02 7.89 -11.63 -0.09 6.93 16 9 O -0.52 -7.59 16.05 5.49 0.09 -7.50 16 10 C 0.50 7.95 7.73 -11.63 -0.09 7.86 16 11 O -0.49 -9.26 13.91 5.47 0.08 -9.19 16 12 N -0.64 -9.87 5.32 -10.31 -0.05 -9.92 16 13 C 0.17 3.13 6.29 -83.77 -0.53 2.60 16 14 C -0.23 -3.91 9.97 -39.33 -0.39 -4.31 16 15 C -0.06 -1.04 10.03 -39.64 -0.40 -1.43 16 16 C -0.24 -5.21 9.17 -39.35 -0.36 -5.57 16 17 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 18 O -0.17 -5.01 9.76 0.06 0.00 -5.01 16 19 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 23 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.18 -4.17 8.64 -39.19 -0.34 -4.51 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 30 H 0.06 0.45 7.61 -51.93 -0.40 0.05 16 31 H 0.06 0.32 7.90 -51.93 -0.41 -0.10 16 32 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.42 4.45 7.16 -40.82 -0.29 4.16 16 37 H 0.42 5.33 8.30 -40.82 -0.34 4.99 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.13 2.76 5.63 -52.48 -0.30 2.46 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.13 3.19 6.23 -52.48 -0.33 2.86 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -32.84 361.60 -6.86 -39.70 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.20 Total: 11.30 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -2.66 Total: -7.87 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.41 Total: -42.40 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.16 Total: -21.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.84 -6.86 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299029570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.727 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds