Wall clock time and date at job start Tue Mar 31 2020 13:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 115.55030 * 2 1 4 4 C 1.52999 * 117.49529 * 214.29631 * 2 1 3 5 5 C 1.52999 * 117.49957 * 145.67106 * 2 1 3 6 6 H 1.08996 * 117.50201 * 214.99782 * 5 2 1 7 7 N 1.46501 * 117.49957 * 0.02562 * 5 2 1 8 8 C 1.34778 * 120.00128 * 204.72602 * 7 5 2 9 9 O 1.21357 * 119.99559 * 0.26933 * 8 7 5 10 10 C 1.49348 * 119.99999 * 180.26996 * 8 7 5 11 11 O 1.21377 * 120.00426 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00000 * 179.97438 * 10 8 7 13 13 C 1.39727 * 120.00116 * 175.49498 * 12 10 8 14 14 C 1.39020 * 120.04017 * 214.86168 * 13 12 10 15 15 C 1.38144 * 120.05659 * 179.74278 * 14 13 12 16 16 C 1.38172 * 120.14389 * 0.56179 * 15 14 13 17 17 C 1.38921 * 120.08843 * 359.69703 * 16 15 14 18 18 O 1.35742 * 120.03640 * 180.02562 * 17 16 15 19 19 C 1.34836 * 116.99823 * 5.36478 * 18 17 16 20 20 H 1.07992 * 120.00069 * 354.96716 * 19 18 17 21 21 C 1.38655 * 119.99944 * 174.96327 * 19 18 17 22 22 N 1.31563 * 119.99918 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00055 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47327 * 89.99919 * 23 21 19 25 25 H 1.48507 * 109.47206 * 210.00314 * 23 21 19 26 26 H 1.48496 * 109.47023 * 329.99608 * 23 21 19 27 27 C 1.38763 * 119.92997 * 0.02562 * 17 16 15 28 28 H 1.09000 * 109.46779 * 274.33010 * 1 2 3 29 29 H 1.09005 * 109.47042 * 34.32718 * 1 2 3 30 30 H 1.09002 * 109.47122 * 154.32981 * 1 2 3 31 31 H 1.09000 * 109.46690 * 205.67286 * 3 2 1 32 32 H 1.09001 * 109.47142 * 325.67074 * 3 2 1 33 33 H 1.08999 * 109.47089 * 85.67262 * 3 2 1 34 34 H 1.09005 * 117.50066 * 145.02263 * 4 2 1 35 35 H 1.08999 * 117.50080 * 359.97438 * 4 2 1 36 36 H 0.97003 * 119.99982 * 24.99516 * 7 5 2 37 37 H 0.97004 * 119.99970 * 355.50498 * 12 10 8 38 38 H 1.08003 * 119.97089 * 0.02562 * 14 13 12 39 39 H 1.08000 * 119.92476 * 180.27849 * 15 14 13 40 40 H 1.08003 * 119.96013 * 179.71807 * 16 15 14 41 41 H 0.96999 * 119.99645 * 179.97438 * 22 21 19 42 42 H 1.08004 * 120.06382 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1714 -0.8747 1.2688 7 7 1.3962 -2.1121 1.4416 8 6 1.8779 -2.7949 2.4991 9 8 3.0060 -2.5850 2.8940 10 6 1.0233 -3.8099 3.1847 11 8 -0.1052 -4.0195 2.7900 12 7 1.5052 -4.4931 4.2419 13 6 0.6760 -5.3735 4.9416 14 6 0.8181 -5.5189 6.3168 15 6 -0.0051 -6.3853 7.0097 16 6 -0.9639 -7.1184 6.3373 17 6 -1.1076 -6.9819 4.9623 18 8 -2.0502 -7.7023 4.3027 19 6 -2.8871 -8.4473 5.0529 20 1 -2.7388 -8.5164 6.1203 21 6 -3.9381 -9.1247 4.4537 22 7 -4.1191 -9.0401 3.1533 23 14 -5.0979 -10.1562 5.4929 24 1 -6.2305 -9.3141 5.9547 25 1 -5.6193 -11.2849 4.6806 26 1 -4.3660 -10.6900 6.6696 27 6 -0.2864 -6.1083 4.2637 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8487 -0.5795 30 1 -0.3633 -0.9263 -0.4452 31 1 3.1823 1.3086 -0.4452 32 1 1.5810 2.0742 -0.5796 33 1 2.2767 1.7416 1.0247 34 1 3.1715 -0.8756 -1.2681 35 1 1.6112 -1.8590 -1.2675 36 1 0.4944 -2.2798 1.1259 37 1 2.4277 -4.3735 4.5170 38 1 1.5697 -4.9505 6.8446 39 1 0.1042 -6.4932 8.0788 40 1 -1.6028 -7.7983 6.8813 41 1 -4.8542 -9.5143 2.7341 42 1 -0.3964 -6.0002 3.1947 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299029570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:27 Heat of formation + Delta-G solvation = -63.665964 kcal Electronic energy + Delta-G solvation = -25455.499702 eV Core-core repulsion = 21594.560213 eV Total energy + Delta-G solvation = -3860.939489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22440 -40.93822 -40.13416 -39.04460 -38.29706 -35.86917 -34.48235 -34.24918 -31.33938 -30.34766 -29.94833 -28.44780 -27.42037 -26.49822 -23.97059 -23.20490 -22.56964 -21.56363 -20.48112 -20.11423 -19.51453 -18.80976 -18.12909 -17.18603 -17.08654 -16.87887 -16.77501 -16.07316 -15.95920 -15.63471 -15.41314 -15.32957 -15.10592 -14.67580 -14.46203 -14.30486 -13.99178 -13.61591 -13.61068 -13.25964 -13.22260 -13.12090 -12.76020 -12.70427 -12.64893 -12.37783 -12.24035 -12.11852 -12.11475 -11.43724 -11.34304 -10.89054 -10.78037 -10.68443 -9.90477 -9.43907 -8.95263 -8.46659 -6.16049 -0.08804 0.57079 0.67845 1.07669 1.35884 1.45849 1.54096 1.91329 2.17144 2.38866 2.74595 2.80433 3.13334 3.16093 3.53411 3.56998 3.79380 3.82982 4.10634 4.10713 4.33574 4.36490 4.50974 4.58120 4.68665 4.73605 4.77837 4.86185 4.93871 4.99326 5.01578 5.03574 5.10385 5.15842 5.25091 5.27275 5.34561 5.39150 5.59967 5.70252 5.79937 6.02195 6.10853 6.18168 6.57817 6.76956 6.97204 7.78096 8.76893 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017856 B = 0.002611 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.747937 B =10721.799290 C =11932.136331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.171 4.171 5 C 0.057 3.943 6 H 0.139 0.861 7 N -0.662 5.662 8 C 0.526 3.474 9 O -0.529 6.529 10 C 0.498 3.502 11 O -0.524 6.524 12 N -0.625 5.625 13 C 0.173 3.827 14 C -0.199 4.199 15 C -0.047 4.047 16 C -0.248 4.248 17 C 0.127 3.873 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.108 0.892 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.022 2.978 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.248 1.248 27 C -0.207 4.207 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.417 0.583 37 H 0.435 0.565 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.272 0.728 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.695 17.964 -1.555 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.171 4.171 4 C -0.209 4.209 5 C -0.048 4.048 6 H 0.156 0.844 7 N -0.312 5.312 8 C 0.307 3.693 9 O -0.406 6.406 10 C 0.280 3.720 11 O -0.399 6.399 12 N -0.273 5.273 13 C 0.079 3.921 14 C -0.219 4.219 15 C -0.065 4.065 16 C -0.268 4.268 17 C 0.076 3.924 18 O -0.138 6.138 19 C -0.489 4.489 20 H 0.125 0.875 21 C -0.223 4.223 22 N -0.561 5.561 23 Si 0.841 3.159 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.172 1.172 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.255 0.745 37 H 0.275 0.725 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.547 17.922 -1.981 22.553 hybrid contribution -0.859 -0.819 -0.128 1.193 sum 12.688 17.103 -2.108 21.399 Atomic orbital electron populations 1.21431 0.91643 1.03077 1.02253 1.22181 0.95608 0.92347 1.02237 1.21401 1.00679 0.92515 1.02543 1.23882 1.03825 1.00642 0.92535 1.22121 0.97067 0.93059 0.92512 0.84382 1.45138 1.18639 1.38074 1.29364 1.19539 0.86395 0.81854 0.81555 1.90741 1.18829 1.66171 1.64900 1.20578 0.87103 0.82629 0.81654 1.90870 1.20242 1.65494 1.63316 1.42914 1.15708 1.39620 1.29048 1.17300 0.92560 0.90752 0.91453 1.20917 1.05295 1.05243 0.90426 1.21045 0.91926 0.92813 1.00732 1.21392 1.05032 1.07069 0.93278 1.19621 0.89773 0.90705 0.92296 1.83956 1.39797 1.53703 1.36347 1.21916 1.07922 1.26163 0.92948 0.87490 1.26687 0.98802 0.99111 0.97711 1.70218 1.31541 1.42850 1.11503 0.84538 0.77092 0.76868 0.77389 1.18870 1.19744 1.17166 1.20163 1.01820 1.00954 0.99946 0.92545 0.90084 0.92414 0.91100 0.90669 0.92044 0.85921 0.88246 0.74538 0.72470 0.81988 0.81965 0.85532 0.91871 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.85 71.98 0.64 -1.09 16 2 C -0.12 -1.61 2.70 -52.18 -0.14 -1.75 16 3 C -0.11 -1.10 9.85 71.98 0.71 -0.39 16 4 C -0.17 -2.23 9.75 30.60 0.30 -1.93 16 5 C 0.06 0.98 6.13 44.99 0.28 1.26 16 6 H 0.14 2.48 7.40 -2.39 -0.02 2.46 16 7 N -0.66 -14.51 5.34 -443.96 -2.37 -16.88 16 8 C 0.53 13.94 7.89 87.24 0.69 14.62 16 9 O -0.53 -14.71 16.05 -3.27 -0.05 -14.76 16 10 C 0.50 15.86 7.73 87.24 0.67 16.54 16 11 O -0.52 -20.72 13.91 -3.33 -0.05 -20.76 16 12 N -0.63 -18.49 5.32 -304.89 -1.62 -20.11 16 13 C 0.17 6.25 6.29 38.20 0.24 6.49 16 14 C -0.20 -5.93 9.97 22.44 0.22 -5.70 16 15 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 16 C -0.25 -10.62 9.17 22.42 0.21 -10.41 16 17 C 0.13 6.59 6.64 22.56 0.15 6.74 16 18 O -0.23 -14.46 9.76 -22.71 -0.22 -14.68 16 19 C -0.41 -24.42 9.49 67.92 0.64 -23.78 16 20 H 0.11 5.68 5.20 -2.91 -0.02 5.66 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 22 N -0.92 -58.10 13.67 21.61 0.30 -57.81 16 23 Si 1.02 43.18 29.55 68.60 2.03 45.21 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.21 -9.75 8.64 22.52 0.19 -9.56 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.88 7.92 -2.38 -0.02 0.86 16 30 H 0.06 0.82 7.61 -2.39 -0.02 0.80 16 31 H 0.07 0.55 7.90 -2.39 -0.02 0.53 16 32 H 0.07 0.59 7.92 -2.39 -0.02 0.57 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.12 1.19 8.05 -2.38 -0.02 1.17 16 35 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 36 H 0.42 9.06 7.16 -92.71 -0.66 8.39 16 37 H 0.43 9.89 8.30 -92.71 -0.77 9.12 16 38 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.13 5.40 5.63 -2.91 -0.02 5.38 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.11 5.54 6.23 -2.91 -0.02 5.52 16 Total: -1.00 -78.19 361.60 3.15 -75.04 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.35 Total: 36.03 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 5.49 Total: -11.27 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -3.69 Total: -94.80 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.32 Total: -50.21 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -78.19 3.15 -75.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299029570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.377 kcal (2) G-P(sol) polarization free energy of solvation -78.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds