Wall clock time and date at job start Tue Mar 31 2020 12:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99529 * 2 1 4 4 H 1.48496 * 109.47288 * 239.99879 * 3 2 1 5 5 H 1.48503 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47350 * 120.00233 * 3 2 1 7 7 C 1.39927 * 120.00635 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00560 * 188.85243 * 7 2 1 9 9 C 1.41406 * 119.99634 * 8.85853 * 7 2 1 10 10 C 1.40774 * 120.20899 * 210.50410 * 9 7 2 11 11 C 1.37645 * 119.88578 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.31745 * 0.02562 * 11 10 9 13 13 C 1.39242 * 120.43193 * 359.97229 * 12 11 10 14 14 N 1.39960 * 119.94702 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99829 * 145.71219 * 14 13 12 16 16 O 1.21584 * 119.99960 * 355.01166 * 15 14 13 17 17 N 1.34772 * 119.99566 * 175.01260 * 15 14 13 18 18 C 1.47420 * 125.65378 * 5.39620 * 17 15 14 19 19 C 1.54914 * 104.83452 * 155.83803 * 18 17 15 20 20 C 1.55151 * 101.57886 * 37.00895 * 19 18 17 21 21 C 1.47027 * 125.64430 * 185.36172 * 17 15 14 22 22 H 1.09004 * 109.87921 * 300.65968 * 21 17 15 23 23 C 1.52995 * 109.88637 * 61.67331 * 21 17 15 24 24 C 1.50696 * 109.47106 * 185.78253 * 23 21 17 25 25 O 1.20822 * 120.00191 * 355.88976 * 24 23 21 26 26 O 1.34233 * 119.99575 * 175.88765 * 24 23 21 27 27 C 1.38273 * 120.10695 * 0.27891 * 13 12 11 28 28 H 0.97005 * 120.01052 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.06041 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84063 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78310 * 179.97438 * 12 11 10 32 32 H 0.96997 * 120.00347 * 325.71295 * 14 13 12 33 33 H 1.08996 * 110.37236 * 274.67736 * 18 17 15 34 34 H 1.09001 * 110.36552 * 37.00195 * 18 17 15 35 35 H 1.08993 * 111.00545 * 155.08838 * 19 18 17 36 36 H 1.09006 * 111.00186 * 278.93777 * 19 18 17 37 37 H 1.09005 * 110.72266 * 206.12920 * 20 19 18 38 38 H 1.09009 * 110.71786 * 82.86724 * 20 19 18 39 39 H 1.09008 * 109.46802 * 65.78358 * 23 21 17 40 40 H 1.08996 * 109.47013 * 305.78774 * 23 21 17 41 41 H 0.96707 * 116.99521 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.16509 * 179.72425 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6966 -1.2124 5 1 1.2771 2.7466 0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0783 -1.2172 0.1445 9 6 1.3137 -2.4292 -0.1875 10 6 1.7859 -3.6134 0.4094 11 6 1.1045 -4.7947 0.2224 12 6 -0.0442 -4.8244 -0.5513 13 6 -0.5231 -3.6609 -1.1478 14 7 -1.6850 -3.7025 -1.9270 15 6 -2.5286 -2.6514 -1.9355 16 8 -2.3286 -1.7053 -1.1984 17 7 -3.5939 -2.6491 -2.7611 18 6 -4.0175 -3.7696 -3.6204 19 6 -5.5309 -3.5380 -3.8567 20 6 -5.5962 -1.9916 -3.9647 21 6 -4.5266 -1.5288 -2.9532 22 1 -4.9972 -1.2714 -2.0044 23 6 -3.7762 -0.3162 -3.5076 24 6 -4.7079 0.8667 -3.5674 25 8 -5.8725 0.7339 -3.2746 26 8 -4.2437 2.0680 -3.9460 27 6 0.1503 -2.4655 -0.9760 28 1 -0.4852 0.8400 0.0004 29 1 2.6808 -3.5950 1.0138 30 1 1.4677 -5.7028 0.6804 31 1 -0.5719 -5.7561 -0.6926 32 1 -1.8831 -4.4877 -2.4609 33 1 -3.4779 -3.7467 -4.5671 34 1 -3.8540 -4.7200 -3.1124 35 1 -5.8581 -4.0087 -4.7837 36 1 -6.1177 -3.8957 -3.0105 37 1 -6.5823 -1.6262 -3.6777 38 1 -5.3410 -1.6644 -4.9728 39 1 -3.4108 -0.5420 -4.5095 40 1 -2.9332 -0.0823 -2.8575 41 1 -4.8792 2.7966 -3.9694 42 1 -0.2178 -1.5634 -1.4419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313406611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:22 Heat of formation + Delta-G solvation = -90.284433 kcal Electronic energy + Delta-G solvation = -27054.144583 eV Core-core repulsion = 23192.050830 eV Total energy + Delta-G solvation = -3862.093752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67267 -39.81567 -38.10340 -36.69322 -36.09499 -34.21502 -33.13175 -31.84081 -31.39227 -29.44244 -27.92265 -26.93339 -25.17287 -23.53373 -21.79284 -21.58571 -20.95062 -20.12064 -18.97246 -18.24589 -17.86565 -17.07618 -16.98536 -15.92272 -15.72330 -15.46357 -14.91767 -14.66756 -14.34614 -14.19052 -13.83218 -13.37896 -13.23769 -12.98258 -12.73209 -12.66155 -12.56786 -12.17251 -11.96393 -11.58430 -11.50978 -11.32485 -11.11805 -11.01150 -10.95931 -10.89104 -10.68661 -10.58099 -10.49900 -9.98787 -9.66267 -9.23712 -9.00037 -8.93819 -8.44162 -7.23339 -6.84533 -6.41580 -4.23291 2.18869 2.64151 2.86721 3.06771 3.17107 3.19263 3.25988 3.28699 3.85107 4.07611 4.31360 4.41248 4.63231 4.71151 4.83183 4.93681 5.15321 5.21795 5.33780 5.44506 5.54748 5.66687 5.77227 5.80549 5.85880 5.91894 6.14835 6.24444 6.39718 6.46028 6.48400 6.78129 7.00840 7.07376 7.23198 7.37166 7.48337 7.80183 7.85663 7.92262 7.99429 8.18145 8.41355 8.57790 8.73503 9.04970 9.08185 9.24302 10.43146 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.005010 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.524215 B = 5587.917008 C = 7892.534655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.074 0.926 9 C 0.120 3.880 10 C -0.234 4.234 11 C -0.083 4.083 12 C -0.263 4.263 13 C 0.157 3.843 14 N -0.680 5.680 15 C 0.704 3.296 16 O -0.526 6.526 17 N -0.639 5.639 18 C 0.098 3.902 19 C -0.132 4.132 20 C -0.123 4.123 21 C 0.175 3.825 22 H 0.084 0.916 23 C -0.132 4.132 24 C 0.490 3.510 25 O -0.520 6.520 26 O -0.515 6.515 27 C -0.149 4.149 28 H 0.279 0.721 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.390 0.610 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.126 0.874 41 H 0.407 0.593 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 -2.472 -11.238 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.117 3.883 10 C -0.254 4.254 11 C -0.102 4.102 12 C -0.285 4.285 13 C 0.065 3.935 14 N -0.327 5.327 15 C 0.406 3.594 16 O -0.398 6.398 17 N -0.381 5.381 18 C -0.025 4.025 19 C -0.170 4.170 20 C -0.161 4.161 21 C 0.070 3.930 22 H 0.102 0.898 23 C -0.171 4.171 24 C 0.332 3.668 25 O -0.408 6.408 26 O -0.327 6.327 27 C -0.171 4.171 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.266 0.734 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.090 -1.927 -10.521 15.408 hybrid contribution -0.172 0.791 -0.217 0.838 sum -11.262 -1.135 -10.738 15.602 Atomic orbital electron populations 1.69884 1.06553 1.28844 1.33764 1.25918 0.94929 1.00780 0.93267 0.86462 0.80024 0.81039 0.79645 1.19132 1.20500 1.19250 1.19440 0.95267 0.90310 1.44837 0.90741 1.17490 0.90965 0.92062 0.87768 1.21036 1.03365 0.93796 1.07226 1.20277 0.95279 0.96498 0.98165 1.20003 1.02580 0.95738 1.10152 1.17414 0.85473 0.95561 0.95088 1.42587 1.22781 1.18085 1.49290 1.15658 0.78864 0.84176 0.80666 1.91170 1.73217 1.34521 1.40868 1.47732 1.29279 1.15525 1.45530 1.22249 0.95164 0.90409 0.94679 1.22772 0.95385 0.96173 1.02635 1.22720 0.99460 0.95277 0.98619 1.20990 0.88050 0.84633 0.99341 0.89783 1.21854 0.99566 0.90278 1.05368 1.23352 0.87699 0.83856 0.71866 1.90688 1.19273 1.85169 1.45712 1.84586 1.47401 1.20130 1.80558 1.21423 0.97268 0.96069 1.02312 0.90987 0.89035 0.89202 0.89521 0.77650 0.91660 0.90955 0.89948 0.90473 0.89151 0.90938 0.87683 0.85635 0.73429 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.14 10.88 55.55 0.60 -20.54 16 2 C 0.07 1.85 5.27 -17.35 -0.09 1.76 16 3 Si 0.90 19.63 29.57 -169.99 -5.03 14.60 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.47 -12.86 9.06 -37.74 -0.34 -13.20 16 8 H 0.07 1.95 7.86 -52.49 -0.41 1.54 16 9 C 0.12 3.31 5.53 -106.85 -0.59 2.72 16 10 C -0.23 -5.88 9.79 -38.84 -0.38 -6.26 16 11 C -0.08 -1.89 10.02 -39.69 -0.40 -2.29 16 12 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 13 C 0.16 3.69 6.25 -83.76 -0.52 3.17 16 14 N -0.68 -13.05 5.30 -14.27 -0.08 -13.13 16 15 C 0.70 13.90 7.93 -86.92 -0.69 13.21 16 16 O -0.53 -12.88 13.28 5.29 0.07 -12.81 16 17 N -0.64 -9.39 3.06 -168.69 -0.52 -9.91 16 18 C 0.10 1.00 6.51 -2.53 -0.02 0.99 16 19 C -0.13 -1.10 7.09 -24.58 -0.17 -1.27 16 20 C -0.12 -1.22 5.44 -24.90 -0.14 -1.36 16 21 C 0.17 2.37 2.49 -66.95 -0.17 2.21 16 22 H 0.08 1.33 7.97 -51.93 -0.41 0.92 16 23 C -0.13 -1.80 5.30 -27.89 -0.15 -1.95 16 24 C 0.49 6.40 8.14 36.00 0.29 6.69 16 25 O -0.52 -7.56 15.52 -18.75 -0.29 -7.85 16 26 O -0.52 -5.74 13.42 -39.27 -0.53 -6.27 16 27 C -0.15 -4.01 7.24 -38.68 -0.28 -4.29 16 28 H 0.28 7.26 8.30 -40.82 -0.34 6.92 16 29 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.39 5.93 7.38 -40.82 -0.30 5.62 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.68 7.43 -51.93 -0.39 0.29 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 38 H 0.07 0.64 7.75 -51.92 -0.40 0.24 16 39 H 0.11 1.21 8.00 -51.92 -0.42 0.80 16 40 H 0.13 2.15 6.88 -51.93 -0.36 1.80 16 41 H 0.41 2.62 9.10 45.56 0.41 3.03 16 42 H 0.14 3.93 4.73 -52.49 -0.25 3.68 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -33.65 350.07 -9.11 -42.77 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.59 Total: 13.97 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -4.03 Total: -6.11 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.01 Total: -43.57 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.75 Total: -26.93 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.65 -9.11 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.519 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds