Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99529 * 2 1 4 4 H 1.48496 * 109.47288 * 239.99879 * 3 2 1 5 5 H 1.48503 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47350 * 120.00233 * 3 2 1 7 7 C 1.39927 * 120.00635 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00560 * 188.85243 * 7 2 1 9 9 C 1.41406 * 119.99634 * 8.85853 * 7 2 1 10 10 C 1.40774 * 120.20899 * 210.50410 * 9 7 2 11 11 C 1.37645 * 119.88578 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.31745 * 0.02562 * 11 10 9 13 13 C 1.39242 * 120.43193 * 359.97229 * 12 11 10 14 14 N 1.39960 * 119.94702 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99829 * 145.71219 * 14 13 12 16 16 O 1.21584 * 119.99960 * 355.01166 * 15 14 13 17 17 N 1.34772 * 119.99566 * 175.01260 * 15 14 13 18 18 C 1.47420 * 125.65378 * 5.39620 * 17 15 14 19 19 C 1.54914 * 104.83452 * 155.83803 * 18 17 15 20 20 C 1.55151 * 101.57886 * 37.00895 * 19 18 17 21 21 C 1.47027 * 125.64430 * 185.36172 * 17 15 14 22 22 H 1.09004 * 109.87921 * 300.65968 * 21 17 15 23 23 C 1.52995 * 109.88637 * 61.67331 * 21 17 15 24 24 C 1.50696 * 109.47106 * 185.78253 * 23 21 17 25 25 O 1.20822 * 120.00191 * 355.88976 * 24 23 21 26 26 O 1.34233 * 119.99575 * 175.88765 * 24 23 21 27 27 C 1.38273 * 120.10695 * 0.27891 * 13 12 11 28 28 H 0.97005 * 120.01052 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.06041 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84063 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78310 * 179.97438 * 12 11 10 32 32 H 0.96997 * 120.00347 * 325.71295 * 14 13 12 33 33 H 1.08996 * 110.37236 * 274.67736 * 18 17 15 34 34 H 1.09001 * 110.36552 * 37.00195 * 18 17 15 35 35 H 1.08993 * 111.00545 * 155.08838 * 19 18 17 36 36 H 1.09006 * 111.00186 * 278.93777 * 19 18 17 37 37 H 1.09005 * 110.72266 * 206.12920 * 20 19 18 38 38 H 1.09009 * 110.71786 * 82.86724 * 20 19 18 39 39 H 1.09008 * 109.46802 * 65.78358 * 23 21 17 40 40 H 1.08996 * 109.47013 * 305.78774 * 23 21 17 41 41 H 0.96707 * 116.99521 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.16509 * 179.72425 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6966 -1.2124 5 1 1.2771 2.7466 0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0783 -1.2172 0.1445 9 6 1.3137 -2.4292 -0.1875 10 6 1.7859 -3.6134 0.4094 11 6 1.1045 -4.7947 0.2224 12 6 -0.0442 -4.8244 -0.5513 13 6 -0.5231 -3.6609 -1.1478 14 7 -1.6850 -3.7025 -1.9270 15 6 -2.5286 -2.6514 -1.9355 16 8 -2.3286 -1.7053 -1.1984 17 7 -3.5939 -2.6491 -2.7611 18 6 -4.0175 -3.7696 -3.6204 19 6 -5.5309 -3.5380 -3.8567 20 6 -5.5962 -1.9916 -3.9647 21 6 -4.5266 -1.5288 -2.9532 22 1 -4.9972 -1.2714 -2.0044 23 6 -3.7762 -0.3162 -3.5076 24 6 -4.7079 0.8667 -3.5674 25 8 -5.8725 0.7339 -3.2746 26 8 -4.2437 2.0680 -3.9460 27 6 0.1503 -2.4655 -0.9760 28 1 -0.4852 0.8400 0.0004 29 1 2.6808 -3.5950 1.0138 30 1 1.4677 -5.7028 0.6804 31 1 -0.5719 -5.7561 -0.6926 32 1 -1.8831 -4.4877 -2.4609 33 1 -3.4779 -3.7467 -4.5671 34 1 -3.8540 -4.7200 -3.1124 35 1 -5.8581 -4.0087 -4.7837 36 1 -6.1177 -3.8957 -3.0105 37 1 -6.5823 -1.6262 -3.6777 38 1 -5.3410 -1.6644 -4.9728 39 1 -3.4108 -0.5420 -4.5095 40 1 -2.9332 -0.0823 -2.8575 41 1 -4.8792 2.7966 -3.9694 42 1 -0.2178 -1.5634 -1.4419 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313406611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -112.790197 kcal Electronic energy + Delta-G solvation = -27055.120506 eV Core-core repulsion = 23192.050830 eV Total energy + Delta-G solvation = -3863.069676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85646 -41.09715 -39.55305 -38.25805 -37.12464 -35.99191 -34.95070 -33.01133 -32.46857 -31.36655 -29.65936 -27.88952 -27.13931 -24.79194 -23.13068 -22.71810 -22.55018 -21.53261 -20.42232 -19.66244 -19.12188 -18.62060 -18.04735 -17.47816 -16.99416 -16.66188 -16.58215 -16.36973 -15.92243 -15.53067 -14.96757 -14.85232 -14.55873 -14.33239 -14.11263 -14.01906 -13.68398 -13.61051 -13.43438 -13.01777 -12.87686 -12.78526 -12.59943 -12.58894 -12.24355 -12.14308 -11.91787 -11.82322 -11.68546 -11.62936 -11.51492 -11.07881 -10.84078 -10.70182 -9.68481 -9.18176 -8.68024 -8.33284 -6.28470 0.94891 1.12086 1.16866 1.36624 1.48460 1.49574 1.55098 2.14089 2.24474 2.32501 2.89057 3.13131 3.53168 3.58640 3.77462 3.82275 4.06837 4.22389 4.30478 4.43127 4.53155 4.58100 4.65965 4.73833 4.82023 4.91526 4.94246 5.00860 5.13503 5.15879 5.26402 5.30182 5.34212 5.41167 5.49766 5.55089 5.85708 5.94558 6.04927 6.22558 6.25406 6.50459 6.76441 6.94080 7.02932 7.09613 7.12380 7.73432 8.47904 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.005010 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.524215 B = 5587.917008 C = 7892.534655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.026 3.974 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.252 4.252 11 C -0.082 4.082 12 C -0.252 4.252 13 C 0.158 3.842 14 N -0.669 5.669 15 C 0.698 3.302 16 O -0.582 6.582 17 N -0.633 5.633 18 C 0.088 3.912 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.170 3.830 22 H 0.051 0.949 23 C -0.128 4.128 24 C 0.497 3.503 25 O -0.535 6.535 26 O -0.515 6.515 27 C -0.177 4.177 28 H 0.276 0.724 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.428 0.572 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 -4.271 -13.026 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.082 3.918 10 C -0.272 4.272 11 C -0.100 4.100 12 C -0.274 4.274 13 C 0.064 3.936 14 N -0.319 5.319 15 C 0.400 3.600 16 O -0.457 6.457 17 N -0.372 5.372 18 C -0.033 4.033 19 C -0.156 4.156 20 C -0.150 4.150 21 C 0.065 3.935 22 H 0.069 0.931 23 C -0.167 4.167 24 C 0.340 3.660 25 O -0.426 6.426 26 O -0.329 6.329 27 C -0.199 4.199 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.249 0.751 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.290 0.710 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.154 -3.767 -12.369 17.745 hybrid contribution 0.059 1.220 0.304 1.259 sum -12.095 -2.547 -12.065 17.273 Atomic orbital electron populations 1.70041 1.08095 1.29314 1.35238 1.26756 0.95652 1.04152 0.92369 0.85361 0.78613 0.76321 0.79994 1.18322 1.20011 1.18397 1.19700 0.95431 0.91517 1.47005 0.90809 1.17887 0.91919 0.93221 0.88770 1.21251 1.04117 0.94212 1.07639 1.20717 0.94819 0.96996 0.97481 1.20469 1.02130 0.96616 1.08155 1.17551 0.86155 0.95011 0.94907 1.42343 1.21474 1.18970 1.49064 1.15883 0.79821 0.83392 0.80904 1.91147 1.74820 1.36392 1.43365 1.47676 1.27587 1.17385 1.44555 1.22659 0.96771 0.89131 0.94746 1.22785 0.93759 0.94703 1.04397 1.22678 0.97625 0.96636 0.98085 1.21110 0.88621 0.84622 0.99134 0.93069 1.21752 0.98394 0.90992 1.05572 1.23120 0.87158 0.84227 0.71527 1.90680 1.19825 1.85540 1.46512 1.84537 1.48212 1.20239 1.79935 1.21301 0.98217 0.96650 1.03683 0.91344 0.88476 0.85239 0.85474 0.75087 0.89517 0.89635 0.86371 0.90622 0.89332 0.89072 0.85431 0.89785 0.70963 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.05 10.88 21.82 0.24 -46.81 16 2 C 0.03 1.44 5.27 85.25 0.45 1.89 16 3 Si 0.98 41.94 29.57 68.60 2.03 43.97 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.51 -29.19 9.06 23.46 0.21 -28.98 16 8 H 0.07 4.06 7.86 -2.91 -0.02 4.04 16 9 C 0.08 4.86 5.53 -21.31 -0.12 4.74 16 10 C -0.25 -12.79 9.79 22.75 0.22 -12.57 16 11 C -0.08 -3.54 10.02 22.20 0.22 -3.32 16 12 C -0.25 -10.62 9.97 22.58 0.23 -10.39 16 13 C 0.16 7.41 6.25 38.09 0.24 7.65 16 14 N -0.67 -25.24 5.30 -317.33 -1.68 -26.92 16 15 C 0.70 28.13 7.93 179.05 1.42 29.55 16 16 O -0.58 -30.24 13.28 -3.98 -0.05 -30.29 16 17 N -0.63 -18.26 3.06 -805.89 -2.47 -20.73 16 18 C 0.09 1.53 6.51 86.86 0.57 2.09 16 19 C -0.12 -1.55 7.09 31.99 0.23 -1.32 16 20 C -0.11 -1.98 5.44 31.78 0.17 -1.81 16 21 C 0.17 4.63 2.49 45.34 0.11 4.74 16 22 H 0.05 1.72 7.97 -2.39 -0.02 1.70 16 23 C -0.13 -3.59 5.30 29.85 0.16 -3.44 16 24 C 0.50 13.04 8.14 71.23 0.58 13.62 16 25 O -0.54 -15.49 15.52 21.98 0.34 -15.15 16 26 O -0.52 -11.27 13.42 -51.44 -0.69 -11.96 16 27 C -0.18 -9.90 7.24 22.85 0.17 -9.73 16 28 H 0.28 15.38 8.30 -92.70 -0.77 14.61 16 29 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.41 11.51 7.38 -92.71 -0.68 10.83 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.28 7.43 -2.39 -0.02 1.27 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.66 7.67 -2.38 -0.02 1.64 16 38 H 0.09 1.31 7.75 -2.38 -0.02 1.29 16 39 H 0.13 2.87 8.00 -2.38 -0.02 2.85 16 40 H 0.08 3.14 6.88 -2.39 -0.02 3.12 16 41 H 0.43 5.07 9.10 -74.05 -0.67 4.40 16 42 H 0.11 6.77 4.73 -2.91 -0.01 6.76 16 Total: -1.00 -79.24 350.07 2.28 -76.96 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.28 Total: 38.22 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.85 Total: -7.28 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -3.91 Total: -94.46 kcal Atomic # 8 Polarization: -57.01 SS G_CDS: -0.40 Total: -57.41 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -79.24 2.28 -76.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.833 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds