Wall clock time and date at job start Tue Mar 31 2020 12:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 120.00337 * 2 1 4 4 H 1.48503 * 109.47258 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99560 * 3 2 1 6 6 H 1.48498 * 109.47446 * 149.99792 * 3 2 1 7 7 C 1.39934 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00015 * 188.90707 * 7 2 1 9 9 C 1.41414 * 119.99901 * 8.90467 * 7 2 1 10 10 C 1.40774 * 120.20509 * 30.33497 * 9 7 2 11 11 C 1.37654 * 119.88022 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31667 * 359.72680 * 11 10 9 13 13 C 1.39241 * 120.43211 * 0.55133 * 12 11 10 14 14 N 1.39959 * 119.94765 * 179.72227 * 13 12 11 15 15 C 1.34775 * 119.99858 * 325.60407 * 14 13 12 16 16 O 1.21590 * 120.00250 * 354.98666 * 15 14 13 17 17 N 1.34775 * 119.99998 * 174.98279 * 15 14 13 18 18 C 1.47425 * 125.64709 * 4.52231 * 17 15 14 19 19 C 1.54916 * 104.83065 * 204.16048 * 18 17 15 20 20 C 1.55404 * 101.66543 * 323.07239 * 19 18 17 21 21 C 1.47025 * 125.65010 * 184.55303 * 17 15 14 22 22 H 1.09001 * 109.87706 * 59.33634 * 21 17 15 23 23 C 1.53000 * 109.88487 * 298.32974 * 21 17 15 24 24 C 1.50693 * 109.47313 * 174.21134 * 23 21 17 25 25 O 1.20832 * 120.00205 * 4.05048 * 24 23 21 26 26 O 1.34229 * 120.00320 * 184.05054 * 24 23 21 27 27 C 1.38275 * 120.10607 * 359.44745 * 13 12 11 28 28 H 0.97002 * 119.99588 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.06518 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.83779 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.78176 * 180.29631 * 12 11 10 32 32 H 0.97001 * 119.99734 * 145.60125 * 14 13 12 33 33 H 1.08995 * 110.36576 * 322.99717 * 18 17 15 34 34 H 1.08997 * 110.36985 * 85.21279 * 18 17 15 35 35 H 1.08994 * 111.00460 * 81.06275 * 19 18 17 36 36 H 1.09001 * 111.00093 * 204.87654 * 19 18 17 37 37 H 1.09004 * 110.69391 * 277.05202 * 20 19 18 38 38 H 1.09000 * 110.85337 * 153.69990 * 20 19 18 39 39 H 1.09001 * 109.46896 * 294.21097 * 23 21 17 40 40 H 1.08997 * 109.47424 * 54.20680 * 23 21 17 41 41 H 0.96703 * 116.99903 * 179.97438 * 26 24 23 42 42 H 1.07998 * 120.16157 * 180.24995 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0780 -1.2175 0.1454 9 6 1.3135 -2.4292 -0.1885 10 6 0.1443 -2.4634 -0.9717 11 6 -0.5260 -3.6522 -1.1517 12 6 -0.0525 -4.8170 -0.5703 13 6 1.0995 -4.7972 0.2116 14 7 1.5657 -5.9789 0.7990 15 6 0.6900 -6.9104 1.2256 16 8 -0.5043 -6.6862 1.1842 17 7 1.1382 -8.0903 1.6981 18 6 2.5530 -8.4568 1.8916 19 6 2.5732 -10.0048 1.8331 20 6 1.2407 -10.3636 2.5478 21 6 0.2972 -9.2255 2.1053 22 1 -0.3127 -9.5554 1.2643 23 6 -0.6039 -8.8136 3.2712 24 6 -1.5595 -9.9349 3.5880 25 8 -1.4757 -10.9853 2.9967 26 8 -2.5038 -9.7669 4.5271 27 6 1.7868 -3.6129 0.4041 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2258 -1.5589 -1.4313 30 1 -1.4227 -3.6777 -1.7531 31 1 -0.5826 -5.7458 -0.7212 32 1 2.5190 -6.1275 0.8989 33 1 3.1657 -8.0390 1.0928 34 1 2.9061 -8.1076 2.8618 35 1 2.5680 -10.3568 0.8016 36 1 3.4293 -10.4051 2.3761 37 1 1.3705 -10.3581 3.6301 38 1 0.8661 -11.3292 2.2082 39 1 0.0094 -8.6006 4.1468 40 1 -1.1680 -7.9221 2.9972 41 1 -3.0938 -10.5145 4.6950 42 1 2.6826 -3.5972 1.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313406613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:27 Heat of formation + Delta-G solvation = -95.464891 kcal Electronic energy + Delta-G solvation = -26192.402589 eV Core-core repulsion = 22330.084195 eV Total energy + Delta-G solvation = -3862.318394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85942 -40.01947 -38.24292 -36.88324 -36.25190 -34.45156 -33.18366 -31.94217 -31.50722 -29.78579 -27.94725 -27.09226 -25.19891 -23.70590 -21.93283 -21.64694 -21.00978 -20.40850 -19.22772 -18.35225 -17.92241 -17.41733 -17.12149 -16.08087 -15.77188 -15.49807 -15.13422 -14.84012 -14.66554 -14.29339 -13.97249 -13.51207 -13.20136 -13.17834 -12.92628 -12.83166 -12.73582 -12.22015 -12.10115 -11.74214 -11.64513 -11.44718 -11.18182 -11.15401 -11.08787 -11.02594 -10.91265 -10.73073 -10.46582 -10.17710 -9.59149 -9.49832 -9.28200 -8.93859 -8.68865 -7.40028 -6.87219 -6.62065 -4.35214 2.03524 2.49275 2.77604 2.85005 3.09867 3.11747 3.13343 3.23909 3.63044 3.97739 4.13821 4.28156 4.46054 4.56560 4.73206 4.81048 4.99730 5.07708 5.19384 5.32481 5.41460 5.55540 5.66552 5.68306 5.69621 5.79400 5.99684 6.17010 6.30512 6.34059 6.56779 6.75923 6.90531 6.96224 7.07606 7.26004 7.36833 7.65352 7.70603 7.79367 8.06514 8.09379 8.24177 8.38492 8.65965 8.88406 8.94468 9.02479 10.30405 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002747 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.694729 B =10189.126284 C =10719.174755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.122 3.878 10 C -0.160 4.160 11 C -0.098 4.098 12 C -0.219 4.219 13 C 0.165 3.835 14 N -0.676 5.676 15 C 0.718 3.282 16 O -0.566 6.566 17 N -0.637 5.637 18 C 0.097 3.903 19 C -0.132 4.132 20 C -0.123 4.123 21 C 0.172 3.828 22 H 0.084 0.916 23 C -0.133 4.133 24 C 0.488 3.512 25 O -0.518 6.518 26 O -0.516 6.516 27 C -0.239 4.239 28 H 0.279 0.721 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.395 0.605 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.409 0.591 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -17.512 6.621 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.180 4.180 11 C -0.117 4.117 12 C -0.240 4.240 13 C 0.074 3.926 14 N -0.322 5.322 15 C 0.421 3.579 16 O -0.442 6.442 17 N -0.377 5.377 18 C -0.026 4.026 19 C -0.170 4.170 20 C -0.161 4.161 21 C 0.068 3.932 22 H 0.102 0.898 23 C -0.172 4.172 24 C 0.331 3.669 25 O -0.407 6.407 26 O -0.328 6.328 27 C -0.261 4.261 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.230 0.770 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.267 0.733 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.805 -17.063 6.324 18.412 hybrid contribution 0.391 0.271 0.380 0.609 sum 3.196 -16.792 6.704 18.361 Atomic orbital electron populations 1.69798 1.07336 1.28860 1.37102 1.25852 0.94832 1.01066 0.92520 0.86270 0.80241 0.80747 0.79117 1.19445 1.20396 1.18806 1.19480 0.95338 0.90225 1.44749 0.90644 1.17370 0.91433 0.91305 0.87960 1.21421 0.98477 0.96514 1.01557 1.20613 0.98390 0.93101 0.99618 1.20362 0.99886 0.98133 1.05644 1.17238 0.96739 0.83175 0.95496 1.42632 1.08511 1.18206 1.62896 1.15484 0.85373 0.78984 0.78061 1.90937 1.13975 1.78254 1.61058 1.47679 1.07032 1.13775 1.69250 1.22308 0.82980 0.95823 1.01529 1.22817 0.97950 0.94347 1.01857 1.22775 0.94342 0.98358 1.00628 1.21050 0.91650 0.84971 0.95547 0.89778 1.21884 0.96880 0.97543 1.00867 1.23356 0.79423 0.88553 0.75591 1.90701 1.71077 1.29068 1.49862 1.84572 1.44250 1.48276 1.55656 1.20741 1.04625 0.91838 1.08855 0.91057 0.86173 0.89027 0.88022 0.77022 0.90643 0.91326 0.90353 0.89731 0.90821 0.88980 0.87541 0.85595 0.73291 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.18 10.85 55.55 0.60 -20.58 16 2 C 0.07 1.86 5.28 -17.35 -0.09 1.77 16 3 Si 0.91 18.83 29.57 -169.99 -5.03 13.81 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.47 -12.34 9.06 -37.74 -0.34 -12.69 16 8 H 0.08 1.90 7.86 -52.49 -0.41 1.49 16 9 C 0.12 3.25 5.54 -106.85 -0.59 2.66 16 10 C -0.16 -4.22 8.65 -38.84 -0.34 -4.56 16 11 C -0.10 -2.41 10.02 -39.69 -0.40 -2.81 16 12 C -0.22 -5.27 8.66 -39.10 -0.34 -5.61 16 13 C 0.17 3.76 6.25 -83.76 -0.52 3.24 16 14 N -0.68 -12.24 5.29 -14.27 -0.08 -12.32 16 15 C 0.72 12.87 8.03 -86.92 -0.70 12.17 16 16 O -0.57 -12.33 12.88 5.29 0.07 -12.26 16 17 N -0.64 -8.35 3.06 -168.69 -0.52 -8.87 16 18 C 0.10 0.88 6.63 -2.53 -0.02 0.86 16 19 C -0.13 -0.95 7.09 -24.44 -0.17 -1.12 16 20 C -0.12 -1.05 5.46 -24.76 -0.14 -1.19 16 21 C 0.17 2.03 2.54 -66.95 -0.17 1.86 16 22 H 0.08 1.15 7.97 -51.93 -0.41 0.73 16 23 C -0.13 -1.54 5.29 -27.89 -0.15 -1.69 16 24 C 0.49 5.42 8.14 36.00 0.29 5.71 16 25 O -0.52 -6.62 15.51 -18.75 -0.29 -6.91 16 26 O -0.52 -4.72 13.42 -39.26 -0.53 -5.24 16 27 C -0.24 -5.76 9.70 -38.69 -0.38 -6.14 16 28 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 29 H 0.12 3.27 6.27 -52.49 -0.33 2.94 16 30 H 0.09 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.10 2.44 6.47 -52.49 -0.34 2.11 16 32 H 0.40 5.75 7.26 -40.82 -0.30 5.45 16 33 H 0.08 0.63 7.21 -51.93 -0.37 0.26 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.56 7.76 -51.93 -0.40 0.15 16 38 H 0.09 0.82 7.67 -51.93 -0.40 0.42 16 39 H 0.11 1.04 8.01 -51.93 -0.42 0.62 16 40 H 0.13 1.83 6.55 -51.93 -0.34 1.49 16 41 H 0.41 1.86 9.10 45.56 0.41 2.27 16 42 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -32.97 349.20 -9.10 -42.08 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -4.56 Total: 12.57 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -4.04 Total: -7.53 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.01 Total: -41.77 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.75 Total: -24.42 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.97 -9.10 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.389 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds