Wall clock time and date at job start Tue Mar 31 2020 12:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86796 * 120.00337 * 2 1 4 4 H 1.48503 * 109.47258 * 269.99888 * 3 2 1 5 5 H 1.48500 * 109.47378 * 29.99560 * 3 2 1 6 6 H 1.48498 * 109.47446 * 149.99792 * 3 2 1 7 7 C 1.39934 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00015 * 188.90707 * 7 2 1 9 9 C 1.41414 * 119.99901 * 8.90467 * 7 2 1 10 10 C 1.40774 * 120.20509 * 30.33497 * 9 7 2 11 11 C 1.37654 * 119.88022 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31667 * 359.72680 * 11 10 9 13 13 C 1.39241 * 120.43211 * 0.55133 * 12 11 10 14 14 N 1.39959 * 119.94765 * 179.72227 * 13 12 11 15 15 C 1.34775 * 119.99858 * 325.60407 * 14 13 12 16 16 O 1.21590 * 120.00250 * 354.98666 * 15 14 13 17 17 N 1.34775 * 119.99998 * 174.98279 * 15 14 13 18 18 C 1.47425 * 125.64709 * 4.52231 * 17 15 14 19 19 C 1.54916 * 104.83065 * 204.16048 * 18 17 15 20 20 C 1.55404 * 101.66543 * 323.07239 * 19 18 17 21 21 C 1.47025 * 125.65010 * 184.55303 * 17 15 14 22 22 H 1.09001 * 109.87706 * 59.33634 * 21 17 15 23 23 C 1.53000 * 109.88487 * 298.32974 * 21 17 15 24 24 C 1.50693 * 109.47313 * 174.21134 * 23 21 17 25 25 O 1.20832 * 120.00205 * 4.05048 * 24 23 21 26 26 O 1.34229 * 120.00320 * 184.05054 * 24 23 21 27 27 C 1.38275 * 120.10607 * 359.44745 * 13 12 11 28 28 H 0.97002 * 119.99588 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.06518 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.83779 * 180.02562 * 11 10 9 31 31 H 1.08002 * 119.78176 * 180.29631 * 12 11 10 32 32 H 0.97001 * 119.99734 * 145.60125 * 14 13 12 33 33 H 1.08995 * 110.36576 * 322.99717 * 18 17 15 34 34 H 1.08997 * 110.36985 * 85.21279 * 18 17 15 35 35 H 1.08994 * 111.00460 * 81.06275 * 19 18 17 36 36 H 1.09001 * 111.00093 * 204.87654 * 19 18 17 37 37 H 1.09004 * 110.69391 * 277.05202 * 20 19 18 38 38 H 1.09000 * 110.85337 * 153.69990 * 20 19 18 39 39 H 1.09001 * 109.46896 * 294.21097 * 23 21 17 40 40 H 1.08997 * 109.47424 * 54.20680 * 23 21 17 41 41 H 0.96703 * 116.99903 * 179.97438 * 26 24 23 42 42 H 1.07998 * 120.16157 * 180.24995 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.6999 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0780 -1.2175 0.1454 9 6 1.3135 -2.4292 -0.1885 10 6 0.1443 -2.4634 -0.9717 11 6 -0.5260 -3.6522 -1.1517 12 6 -0.0525 -4.8170 -0.5703 13 6 1.0995 -4.7972 0.2116 14 7 1.5657 -5.9789 0.7990 15 6 0.6900 -6.9104 1.2256 16 8 -0.5043 -6.6862 1.1842 17 7 1.1382 -8.0903 1.6981 18 6 2.5530 -8.4568 1.8916 19 6 2.5732 -10.0048 1.8331 20 6 1.2407 -10.3636 2.5478 21 6 0.2972 -9.2255 2.1053 22 1 -0.3127 -9.5554 1.2643 23 6 -0.6039 -8.8136 3.2712 24 6 -1.5595 -9.9349 3.5880 25 8 -1.4757 -10.9853 2.9967 26 8 -2.5038 -9.7669 4.5271 27 6 1.7868 -3.6129 0.4041 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2258 -1.5589 -1.4313 30 1 -1.4227 -3.6777 -1.7531 31 1 -0.5826 -5.7458 -0.7212 32 1 2.5190 -6.1275 0.8989 33 1 3.1657 -8.0390 1.0928 34 1 2.9061 -8.1076 2.8618 35 1 2.5680 -10.3568 0.8016 36 1 3.4293 -10.4051 2.3761 37 1 1.3705 -10.3581 3.6301 38 1 0.8661 -11.3292 2.2082 39 1 0.0094 -8.6006 4.1468 40 1 -1.1680 -7.9221 2.9972 41 1 -3.0938 -10.5145 4.6950 42 1 2.6826 -3.5972 1.0071 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313406613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:26 Heat of formation + Delta-G solvation = -116.601842 kcal Electronic energy + Delta-G solvation = -26193.319156 eV Core-core repulsion = 22330.084195 eV Total energy + Delta-G solvation = -3863.234961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94111 -41.14192 -39.62335 -38.39769 -37.10733 -36.13973 -34.93574 -32.98624 -32.49032 -31.73328 -29.67326 -27.91218 -27.15153 -24.85063 -23.01099 -22.82178 -22.68103 -21.72296 -20.57065 -19.52414 -19.19682 -18.81587 -18.07846 -17.39876 -16.98350 -16.82733 -16.71005 -16.32868 -16.04002 -15.78871 -14.95551 -14.85090 -14.65665 -14.28767 -14.11550 -14.06461 -13.91433 -13.60402 -13.47461 -13.06111 -12.89240 -12.84339 -12.76096 -12.57106 -12.27318 -12.13543 -11.93786 -11.88659 -11.68606 -11.64173 -11.39689 -11.21322 -11.11160 -10.72118 -9.79856 -9.35661 -8.71058 -8.50548 -6.35659 0.93743 0.98844 1.14868 1.40139 1.43141 1.53422 1.56384 2.07018 2.23469 2.25495 2.82491 3.00391 3.52098 3.55809 3.72844 3.76228 4.06736 4.21566 4.30804 4.41282 4.43716 4.57606 4.65273 4.67410 4.79276 4.91544 4.98021 5.02595 5.04843 5.13148 5.13729 5.19004 5.31661 5.34752 5.39186 5.57530 5.75608 5.80728 6.02913 6.12062 6.18441 6.37111 6.70439 6.91490 6.96358 6.96874 7.02981 7.51946 8.42805 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002747 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.694729 B =10189.126284 C =10719.174755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.187 4.187 11 C -0.101 4.101 12 C -0.231 4.231 13 C 0.179 3.821 14 N -0.668 5.668 15 C 0.714 3.286 16 O -0.612 6.612 17 N -0.629 5.629 18 C 0.086 3.914 19 C -0.120 4.120 20 C -0.113 4.113 21 C 0.166 3.834 22 H 0.058 0.942 23 C -0.131 4.131 24 C 0.496 3.504 25 O -0.537 6.537 26 O -0.515 6.515 27 C -0.246 4.246 28 H 0.285 0.715 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.429 0.571 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -18.599 8.032 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.527 4.527 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.207 4.207 11 C -0.119 4.119 12 C -0.252 4.252 13 C 0.085 3.915 14 N -0.316 5.316 15 C 0.417 3.583 16 O -0.491 6.491 17 N -0.367 5.367 18 C -0.035 4.035 19 C -0.158 4.158 20 C -0.151 4.151 21 C 0.062 3.938 22 H 0.076 0.924 23 C -0.169 4.169 24 C 0.339 3.661 25 O -0.427 6.427 26 O -0.329 6.329 27 C -0.268 4.268 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.291 0.709 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.934 -18.232 7.767 20.423 hybrid contribution -0.334 0.454 -0.002 0.564 sum 4.600 -17.778 7.765 19.938 Atomic orbital electron populations 1.69886 1.08988 1.30196 1.37456 1.26786 0.95597 1.04581 0.91403 0.85117 0.78900 0.75732 0.79389 1.18734 1.19753 1.17928 1.19792 0.95795 0.91073 1.46029 0.90060 1.17747 0.91903 0.92614 0.88451 1.21343 0.99643 0.96506 1.03163 1.20809 0.98744 0.92841 0.99555 1.20465 1.00680 0.97777 1.06297 1.17208 0.95669 0.84453 0.94175 1.42398 1.09646 1.16999 1.62583 1.15628 0.84633 0.80001 0.78075 1.90908 1.15946 1.79459 1.62779 1.47653 1.09381 1.12182 1.67465 1.22705 0.80334 0.97477 1.03021 1.22826 0.98167 0.92600 1.02171 1.22740 0.94075 0.96515 1.01796 1.21203 0.92271 0.85474 0.94844 0.92351 1.21791 0.97063 0.96464 1.01597 1.23142 0.79494 0.87939 0.75540 1.90697 1.71680 1.29732 1.50600 1.84523 1.44126 1.49527 1.54740 1.20893 1.05356 0.91568 1.08957 0.90451 0.87782 0.87479 0.88222 0.74798 0.89694 0.89280 0.90507 0.86526 0.89066 0.89140 0.85428 0.88793 0.70894 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.11 10.85 21.82 0.24 -44.87 16 2 C 0.03 1.49 5.28 85.25 0.45 1.94 16 3 Si 0.99 38.42 29.57 68.60 2.03 40.44 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.50 -26.60 9.06 23.46 0.21 -26.39 16 8 H 0.08 4.10 7.86 -2.91 -0.02 4.08 16 9 C 0.10 5.22 5.54 -21.31 -0.12 5.10 16 10 C -0.19 -10.23 8.65 22.75 0.20 -10.03 16 11 C -0.10 -5.10 10.02 22.20 0.22 -4.88 16 12 C -0.23 -11.35 8.66 22.58 0.20 -11.15 16 13 C 0.18 8.16 6.25 38.09 0.24 8.40 16 14 N -0.67 -23.65 5.29 -317.33 -1.68 -25.33 16 15 C 0.71 25.40 8.03 179.06 1.44 26.84 16 16 O -0.61 -27.30 12.88 -4.00 -0.05 -27.35 16 17 N -0.63 -15.66 3.06 -805.87 -2.47 -18.13 16 18 C 0.09 1.29 6.63 86.86 0.58 1.86 16 19 C -0.12 -1.29 7.09 32.08 0.23 -1.06 16 20 C -0.11 -1.64 5.46 31.87 0.17 -1.46 16 21 C 0.17 3.77 2.54 45.34 0.12 3.89 16 22 H 0.06 1.62 7.97 -2.39 -0.02 1.60 16 23 C -0.13 -2.95 5.29 29.85 0.16 -2.79 16 24 C 0.50 10.56 8.14 71.23 0.58 11.14 16 25 O -0.54 -13.22 15.51 21.95 0.34 -12.88 16 26 O -0.52 -8.74 13.42 -51.41 -0.69 -9.43 16 27 C -0.25 -11.92 9.70 22.85 0.22 -11.70 16 28 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 29 H 0.10 5.94 6.27 -2.91 -0.02 5.92 16 30 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.10 4.92 6.47 -2.91 -0.02 4.90 16 32 H 0.41 11.27 7.26 -92.71 -0.67 10.60 16 33 H 0.08 1.14 7.21 -2.39 -0.02 1.13 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 1.04 7.76 -2.39 -0.02 1.02 16 38 H 0.09 1.40 7.67 -2.39 -0.02 1.39 16 39 H 0.13 2.26 8.01 -2.39 -0.02 2.24 16 40 H 0.09 2.81 6.55 -2.39 -0.02 2.80 16 41 H 0.43 3.18 9.10 -74.06 -0.67 2.51 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -74.05 349.20 2.33 -71.71 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.27 Total: 36.12 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 4.89 Total: -10.29 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -3.91 Total: -88.33 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.40 Total: -49.66 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Total: -74.05 2.33 -71.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313406613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.889 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds