Wall clock time and date at job start Tue Mar 31 2020 12:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86794 * 119.99697 * 2 1 4 4 H 1.48503 * 109.47129 * 239.99341 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47462 * 119.99835 * 3 2 1 7 7 C 1.39929 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00349 * 196.70537 * 7 2 1 9 9 C 1.41405 * 120.00285 * 16.71289 * 7 2 1 10 10 C 1.40782 * 120.21386 * 205.24142 * 9 7 2 11 11 C 1.37634 * 119.88405 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32699 * 0.02562 * 11 10 9 13 13 C 1.39258 * 120.42691 * 359.96785 * 12 11 10 14 14 N 1.39955 * 119.94738 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99978 * 145.60790 * 14 13 12 16 16 O 1.21584 * 119.99849 * 354.83995 * 15 14 13 17 17 N 1.34770 * 119.99985 * 174.83999 * 15 14 13 18 18 C 1.46505 * 120.00148 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.66565 * 328.23539 * 18 17 15 20 20 C 1.54959 * 110.76529 * 91.62929 * 18 17 15 21 21 C 1.54262 * 104.16200 * 156.22500 * 20 18 17 22 22 C 1.53881 * 106.63741 * 336.44653 * 21 20 18 23 23 H 1.08997 * 110.03335 * 119.30976 * 22 21 20 24 24 C 1.50699 * 110.03067 * 240.69001 * 22 21 20 25 25 O 1.20827 * 120.00001 * 118.55128 * 24 22 21 26 26 O 1.34224 * 120.00228 * 298.54365 * 24 22 21 27 27 C 1.54268 * 106.60006 * 359.97438 * 22 21 20 28 28 C 1.38273 * 120.10081 * 0.28123 * 13 12 11 29 29 H 0.96995 * 120.00193 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05484 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.83784 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.79371 * 179.97438 * 12 11 10 33 33 H 0.97000 * 119.99673 * 325.60692 * 14 13 12 34 34 H 0.96999 * 120.00120 * 359.97438 * 17 15 14 35 35 H 1.09007 * 110.47927 * 37.57217 * 20 18 17 36 36 H 1.09000 * 110.53620 * 274.90819 * 20 18 17 37 37 H 1.09000 * 110.03360 * 217.14440 * 21 20 18 38 38 H 1.08995 * 110.03356 * 95.74992 * 21 20 18 39 39 H 0.96702 * 117.00376 * 179.97438 * 26 24 22 40 40 H 1.08999 * 110.48913 * 142.28720 * 27 22 21 41 41 H 1.09008 * 110.48396 * 264.80214 * 27 22 21 42 42 H 1.07999 * 120.15743 * 179.72113 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0538 -1.2315 0.2694 9 6 1.3458 -2.4108 -0.3511 10 6 1.8178 -3.6475 0.1282 11 6 1.1677 -4.8103 -0.2179 12 6 0.0509 -4.7702 -1.0365 13 6 -0.4274 -3.5542 -1.5179 14 7 -1.5570 -3.5254 -2.3438 15 6 -2.4214 -2.4942 -2.2674 16 8 -2.2719 -1.6372 -1.4180 17 7 -3.4516 -2.4130 -3.1326 18 6 -4.3910 -1.2918 -3.0499 19 1 -4.5000 -0.9565 -2.0186 20 6 -3.9371 -0.1262 -3.9646 21 6 -5.2359 0.6541 -4.2541 22 6 -6.3979 -0.3343 -4.0529 23 1 -7.0580 0.0214 -3.2618 24 6 -7.1703 -0.4914 -5.3373 25 8 -7.2395 -1.5725 -5.8723 26 8 -7.7815 0.5697 -5.8870 27 6 -5.7653 -1.6819 -3.6485 28 6 0.2150 -2.3758 -1.1855 29 1 -0.4850 0.8400 -0.0004 30 1 2.6879 -3.6837 0.7669 31 1 1.5302 -5.7587 0.1505 32 1 -0.4523 -5.6879 -1.3029 33 1 -1.7176 -4.2476 -2.9711 34 1 -3.5707 -3.0965 -3.8104 35 1 -3.5095 -0.5120 -4.8901 36 1 -3.2180 0.5085 -3.4467 37 1 -5.2306 1.0201 -5.2808 38 1 -5.3320 1.4895 -3.5606 39 1 -8.2645 0.4200 -6.7113 40 1 -6.3793 -2.1823 -2.8998 41 1 -5.6356 -2.3200 -4.5228 42 1 -0.1525 -1.4326 -1.5621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313407123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:01 Heat of formation + Delta-G solvation = -104.530222 kcal Electronic energy + Delta-G solvation = -26223.214077 eV Core-core repulsion = 22360.502581 eV Total energy + Delta-G solvation = -3862.711496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88009 -39.74012 -38.05279 -36.91894 -36.36819 -34.12993 -33.47816 -33.00389 -29.49950 -29.30802 -28.75078 -27.32308 -25.15962 -23.42730 -21.95582 -20.91697 -20.49631 -20.33849 -19.65030 -18.28380 -17.99646 -17.32361 -17.19194 -16.35854 -15.74902 -15.18688 -15.09341 -14.73929 -14.56228 -14.36276 -13.85614 -13.54003 -13.38623 -13.01098 -12.76724 -12.53458 -12.15002 -12.01851 -11.88224 -11.64119 -11.57450 -11.44135 -11.14032 -11.09471 -11.00683 -10.95166 -10.66275 -10.51843 -10.49745 -9.96837 -9.65082 -9.26961 -8.92849 -8.89709 -8.67957 -7.27398 -6.82090 -6.46595 -4.20466 1.88279 2.64672 2.84247 3.04127 3.15474 3.18085 3.24072 3.31319 3.90940 4.05653 4.18883 4.32066 4.64319 4.78857 4.80718 5.05797 5.08363 5.20446 5.24014 5.34099 5.42070 5.63938 5.81246 5.82227 5.92472 6.12583 6.17260 6.20570 6.28275 6.53213 6.79644 6.83565 6.98068 7.11206 7.23549 7.38227 7.51485 7.56033 7.83143 7.96899 8.04933 8.20430 8.43969 8.63712 8.77056 9.04390 9.10288 9.31861 10.37589 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.003327 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.467875 B = 8412.809557 C =10050.195244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.120 3.880 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.270 4.270 13 C 0.161 3.839 14 N -0.685 5.685 15 C 0.687 3.313 16 O -0.533 6.533 17 N -0.747 5.747 18 C 0.166 3.834 19 H 0.103 0.897 20 C -0.139 4.139 21 C -0.110 4.110 22 C -0.084 4.084 23 H 0.116 0.884 24 C 0.486 3.514 25 O -0.515 6.515 26 O -0.516 6.516 27 C -0.122 4.122 28 C -0.158 4.158 29 H 0.280 0.720 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.390 0.610 34 H 0.390 0.610 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.190 1.334 -10.868 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.148 4.148 3 Si 0.725 3.275 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.261 4.261 11 C -0.099 4.099 12 C -0.292 4.292 13 C 0.069 3.931 14 N -0.332 5.332 15 C 0.387 3.613 16 O -0.405 6.405 17 N -0.403 5.403 18 C 0.059 3.941 19 H 0.121 0.879 20 C -0.178 4.178 21 C -0.148 4.148 22 C -0.103 4.103 23 H 0.134 0.866 24 C 0.328 3.672 25 O -0.403 6.403 26 O -0.327 6.327 27 C -0.160 4.160 28 C -0.179 4.179 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.223 0.777 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.268 0.732 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.094 2.107 -9.824 17.309 hybrid contribution -0.272 -0.099 -1.217 1.251 sum -14.366 2.008 -11.041 18.229 Atomic orbital electron populations 1.69921 1.06753 1.29066 1.32145 1.25946 0.94810 1.00906 0.93163 0.86509 0.80203 0.81027 0.79757 1.19057 1.20470 1.19179 1.19469 0.97577 0.91113 1.41382 0.90640 1.17482 0.90656 0.92070 0.88122 1.20955 1.04274 0.93003 1.07856 1.20262 0.95521 0.96481 0.97629 1.19981 1.03783 0.94528 1.10894 1.17379 0.86276 0.94924 0.94545 1.42570 1.24571 1.23817 1.42201 1.16122 0.79707 0.83210 0.82301 1.91154 1.73598 1.39643 1.36056 1.45096 1.29867 1.28464 1.36889 1.21646 0.86185 0.85615 1.00620 0.87922 1.22855 0.97008 0.97674 1.00313 1.22067 0.92429 0.97400 1.02901 1.21621 0.97268 0.99065 0.92366 0.86642 1.23488 0.76071 0.81195 0.86421 1.90714 1.58773 1.28037 1.62789 1.84549 1.64213 1.40780 1.43176 1.22661 0.95948 0.95172 1.02260 1.21365 0.97997 0.96500 1.02051 0.90864 0.89137 0.89290 0.89566 0.77701 0.77682 0.91225 0.89939 0.90989 0.89861 0.73248 0.90041 0.89128 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.72 10.96 55.55 0.61 -20.11 16 2 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.90 19.39 29.59 -169.99 -5.03 14.36 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.47 -12.84 9.05 -37.74 -0.34 -13.18 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.33 5.57 -106.85 -0.59 2.74 16 10 C -0.24 -6.12 9.79 -38.84 -0.38 -6.50 16 11 C -0.08 -1.84 10.01 -39.69 -0.40 -2.24 16 12 C -0.27 -6.10 9.97 -39.10 -0.39 -6.49 16 13 C 0.16 3.83 6.25 -83.76 -0.52 3.31 16 14 N -0.68 -13.09 5.34 -14.27 -0.08 -13.17 16 15 C 0.69 13.31 8.29 -86.92 -0.72 12.59 16 16 O -0.53 -12.94 13.75 5.29 0.07 -12.87 16 17 N -0.75 -10.33 5.18 -56.69 -0.29 -10.63 16 18 C 0.17 2.04 3.27 -65.90 -0.22 1.83 16 19 H 0.10 1.47 7.54 -51.93 -0.39 1.08 16 20 C -0.14 -1.62 6.52 -25.04 -0.16 -1.78 16 21 C -0.11 -0.97 6.42 -25.61 -0.16 -1.13 16 22 C -0.08 -0.70 3.41 -90.65 -0.31 -1.01 16 23 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 24 C 0.49 4.45 7.39 36.00 0.27 4.72 16 25 O -0.52 -6.22 16.17 -18.75 -0.30 -6.53 16 26 O -0.52 -3.52 13.35 -39.24 -0.52 -4.05 16 27 C -0.12 -1.17 5.77 -25.07 -0.14 -1.32 16 28 C -0.16 -4.28 7.28 -38.69 -0.28 -4.56 16 29 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 30 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.39 5.81 8.84 -40.82 -0.36 5.45 16 34 H 0.39 4.24 8.59 -40.82 -0.35 3.89 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.60 7.63 -51.93 -0.40 0.21 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.41 1.14 9.10 45.56 0.41 1.55 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.92 6.77 -51.92 -0.35 0.57 16 42 H 0.14 3.93 4.63 -52.49 -0.24 3.69 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -34.40 353.99 -9.27 -43.67 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.61 Total: 15.19 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -4.45 Total: -11.22 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.24 Total: -43.90 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.75 Total: -23.44 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.40 -9.27 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.855 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds