Wall clock time and date at job start Tue Mar 31 2020 12:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86794 * 119.99697 * 2 1 4 4 H 1.48503 * 109.47129 * 239.99341 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47462 * 119.99835 * 3 2 1 7 7 C 1.39929 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00349 * 196.70537 * 7 2 1 9 9 C 1.41405 * 120.00285 * 16.71289 * 7 2 1 10 10 C 1.40782 * 120.21386 * 205.24142 * 9 7 2 11 11 C 1.37634 * 119.88405 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32699 * 0.02562 * 11 10 9 13 13 C 1.39258 * 120.42691 * 359.96785 * 12 11 10 14 14 N 1.39955 * 119.94738 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99978 * 145.60790 * 14 13 12 16 16 O 1.21584 * 119.99849 * 354.83995 * 15 14 13 17 17 N 1.34770 * 119.99985 * 174.83999 * 15 14 13 18 18 C 1.46505 * 120.00148 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.66565 * 328.23539 * 18 17 15 20 20 C 1.54959 * 110.76529 * 91.62929 * 18 17 15 21 21 C 1.54262 * 104.16200 * 156.22500 * 20 18 17 22 22 C 1.53881 * 106.63741 * 336.44653 * 21 20 18 23 23 H 1.08997 * 110.03335 * 119.30976 * 22 21 20 24 24 C 1.50699 * 110.03067 * 240.69001 * 22 21 20 25 25 O 1.20827 * 120.00001 * 118.55128 * 24 22 21 26 26 O 1.34224 * 120.00228 * 298.54365 * 24 22 21 27 27 C 1.54268 * 106.60006 * 359.97438 * 22 21 20 28 28 C 1.38273 * 120.10081 * 0.28123 * 13 12 11 29 29 H 0.96995 * 120.00193 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05484 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.83784 * 180.02562 * 11 10 9 32 32 H 1.07996 * 119.79371 * 179.97438 * 12 11 10 33 33 H 0.97000 * 119.99673 * 325.60692 * 14 13 12 34 34 H 0.96999 * 120.00120 * 359.97438 * 17 15 14 35 35 H 1.09007 * 110.47927 * 37.57217 * 20 18 17 36 36 H 1.09000 * 110.53620 * 274.90819 * 20 18 17 37 37 H 1.09000 * 110.03360 * 217.14440 * 21 20 18 38 38 H 1.08995 * 110.03356 * 95.74992 * 21 20 18 39 39 H 0.96702 * 117.00376 * 179.97438 * 26 24 22 40 40 H 1.08999 * 110.48913 * 142.28720 * 27 22 21 41 41 H 1.09008 * 110.48396 * 264.80214 * 27 22 21 42 42 H 1.07999 * 120.15743 * 179.72113 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0538 -1.2315 0.2694 9 6 1.3458 -2.4108 -0.3511 10 6 1.8178 -3.6475 0.1282 11 6 1.1677 -4.8103 -0.2179 12 6 0.0509 -4.7702 -1.0365 13 6 -0.4274 -3.5542 -1.5179 14 7 -1.5570 -3.5254 -2.3438 15 6 -2.4214 -2.4942 -2.2674 16 8 -2.2719 -1.6372 -1.4180 17 7 -3.4516 -2.4130 -3.1326 18 6 -4.3910 -1.2918 -3.0499 19 1 -4.5000 -0.9565 -2.0186 20 6 -3.9371 -0.1262 -3.9646 21 6 -5.2359 0.6541 -4.2541 22 6 -6.3979 -0.3343 -4.0529 23 1 -7.0580 0.0214 -3.2618 24 6 -7.1703 -0.4914 -5.3373 25 8 -7.2395 -1.5725 -5.8723 26 8 -7.7815 0.5697 -5.8870 27 6 -5.7653 -1.6819 -3.6485 28 6 0.2150 -2.3758 -1.1855 29 1 -0.4850 0.8400 -0.0004 30 1 2.6879 -3.6837 0.7669 31 1 1.5302 -5.7587 0.1505 32 1 -0.4523 -5.6879 -1.3029 33 1 -1.7176 -4.2476 -2.9711 34 1 -3.5707 -3.0965 -3.8104 35 1 -3.5095 -0.5120 -4.8901 36 1 -3.2180 0.5085 -3.4467 37 1 -5.2306 1.0201 -5.2808 38 1 -5.3320 1.4895 -3.5606 39 1 -8.2645 0.4200 -6.7113 40 1 -6.3793 -2.1823 -2.8998 41 1 -5.6356 -2.3200 -4.5228 42 1 -0.1525 -1.4326 -1.5621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313407123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:00 Heat of formation + Delta-G solvation = -128.571411 kcal Electronic energy + Delta-G solvation = -26224.256581 eV Core-core repulsion = 22360.502581 eV Total energy + Delta-G solvation = -3863.754000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.69242 -41.16788 -39.35560 -38.38018 -37.06815 -35.94355 -34.95837 -34.62878 -31.40420 -30.39976 -29.98994 -28.65044 -27.12897 -24.28660 -23.48025 -22.67632 -21.66346 -21.52969 -20.87351 -19.65431 -19.01119 -18.86463 -18.11231 -17.52952 -17.11689 -16.64593 -16.48743 -16.17614 -15.92530 -15.84903 -15.24160 -14.81357 -14.55790 -14.46325 -14.25179 -14.06724 -13.42960 -13.37617 -12.99625 -12.81131 -12.78915 -12.72953 -12.56584 -12.44012 -12.31445 -12.22524 -11.93094 -11.85061 -11.81892 -11.51004 -11.31144 -11.10847 -10.79127 -10.68406 -9.97679 -9.23826 -8.68484 -8.37257 -6.25442 0.98324 1.18421 1.19298 1.37531 1.49291 1.54019 1.75040 2.14988 2.24477 2.34905 2.86624 3.27690 3.47451 3.57046 3.83715 3.92590 4.23121 4.30464 4.38976 4.43768 4.49491 4.53914 4.60696 4.76240 4.85810 4.94616 5.04170 5.06914 5.16959 5.19363 5.23279 5.32260 5.34319 5.46959 5.61125 5.66689 5.85218 5.94486 6.07171 6.22772 6.32679 6.50341 6.76531 6.99931 7.03682 7.12957 7.23816 7.80436 8.43967 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.003327 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.467875 B = 8412.809557 C =10050.195244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.029 3.971 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.260 4.260 11 C -0.079 4.079 12 C -0.262 4.262 13 C 0.162 3.838 14 N -0.675 5.675 15 C 0.683 3.317 16 O -0.585 6.585 17 N -0.724 5.724 18 C 0.160 3.840 19 H 0.080 0.920 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.081 4.081 23 H 0.139 0.861 24 C 0.494 3.506 25 O -0.548 6.548 26 O -0.510 6.510 27 C -0.109 4.109 28 C -0.187 4.187 29 H 0.280 0.720 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.413 0.587 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.428 0.572 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 0.699 -12.049 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.188 4.188 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.082 3.918 10 C -0.280 4.280 11 C -0.097 4.097 12 C -0.283 4.283 13 C 0.068 3.932 14 N -0.324 5.324 15 C 0.383 3.617 16 O -0.460 6.460 17 N -0.381 5.381 18 C 0.054 3.946 19 H 0.098 0.902 20 C -0.177 4.177 21 C -0.139 4.139 22 C -0.100 4.100 23 H 0.157 0.843 24 C 0.338 3.662 25 O -0.438 6.438 26 O -0.323 6.323 27 C -0.147 4.147 28 C -0.209 4.209 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.250 0.750 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.289 0.711 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.531 1.439 -11.077 19.130 hybrid contribution 0.069 -0.033 -0.915 0.918 sum -15.462 1.406 -11.991 19.617 Atomic orbital electron populations 1.70046 1.08320 1.29809 1.33313 1.26785 0.95539 1.04277 0.92179 0.85379 0.78784 0.76268 0.79990 1.18593 1.19585 1.18250 1.19730 0.97795 0.92421 1.43532 0.90775 1.17895 0.91595 0.93302 0.89003 1.21173 1.05042 0.93322 1.08498 1.20700 0.95034 0.97213 0.96787 1.20437 1.03251 0.95359 1.09259 1.17518 0.86867 0.94479 0.94321 1.42360 1.23291 1.24671 1.42067 1.16357 0.80446 0.82480 0.82445 1.91136 1.75000 1.41414 1.38483 1.44890 1.28297 1.29165 1.35751 1.21768 0.87468 0.85464 0.99893 0.90192 1.22778 0.98001 0.97318 0.99610 1.21992 0.90808 0.97353 1.03725 1.21615 0.97345 0.97988 0.93074 0.84338 1.23445 0.75649 0.80968 0.86174 1.90712 1.60139 1.29302 1.63676 1.84504 1.63923 1.39650 1.44251 1.22535 0.93994 0.96043 1.02166 1.21253 0.99077 0.96899 1.03643 0.90909 0.88603 0.85417 0.85647 0.75014 0.75528 0.91182 0.92932 0.90057 0.88898 0.71062 0.88972 0.89238 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.64 10.96 21.82 0.24 -45.40 16 2 C 0.03 1.60 5.15 85.25 0.44 2.04 16 3 Si 0.97 41.15 29.59 68.60 2.03 43.18 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.51 -29.13 9.05 23.46 0.21 -28.92 16 8 H 0.07 4.09 7.90 -2.91 -0.02 4.06 16 9 C 0.08 4.90 5.57 -21.31 -0.12 4.78 16 10 C -0.26 -13.37 9.79 22.75 0.22 -13.14 16 11 C -0.08 -3.48 10.01 22.20 0.22 -3.26 16 12 C -0.26 -11.22 9.97 22.58 0.23 -11.00 16 13 C 0.16 7.69 6.25 38.10 0.24 7.93 16 14 N -0.68 -25.34 5.34 -317.33 -1.70 -27.04 16 15 C 0.68 26.79 8.29 179.06 1.48 28.27 16 16 O -0.58 -29.70 13.75 -3.98 -0.05 -29.76 16 17 N -0.72 -19.71 5.18 -451.55 -2.34 -22.05 16 18 C 0.16 3.91 3.27 46.31 0.15 4.06 16 19 H 0.08 2.38 7.54 -2.39 -0.02 2.36 16 20 C -0.14 -3.22 6.52 31.69 0.21 -3.01 16 21 C -0.10 -1.62 6.42 31.32 0.20 -1.42 16 22 C -0.08 -1.17 3.41 -10.81 -0.04 -1.21 16 23 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 24 C 0.49 7.84 7.39 71.24 0.53 8.37 16 25 O -0.55 -12.15 16.17 21.96 0.36 -11.79 16 26 O -0.51 -5.51 13.35 -51.36 -0.69 -6.19 16 27 C -0.11 -1.91 5.77 31.67 0.18 -1.72 16 28 C -0.19 -10.52 7.28 22.85 0.17 -10.36 16 29 H 0.28 15.14 8.30 -92.71 -0.77 14.37 16 30 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 31 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.41 11.41 8.84 -92.71 -0.82 10.59 16 34 H 0.41 8.20 8.59 -92.71 -0.80 7.41 16 35 H 0.07 1.60 8.14 -2.38 -0.02 1.59 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.43 1.18 9.10 -74.06 -0.67 0.51 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.64 6.77 -2.38 -0.02 1.63 16 42 H 0.11 6.78 4.63 -2.91 -0.01 6.76 16 Total: -1.00 -78.90 353.99 0.98 -77.93 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -1.19 Total: 39.73 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 4.32 Total: -18.60 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -3.80 Total: -94.49 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -0.39 Total: -47.74 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -78.90 0.98 -77.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.644 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds