Wall clock time and date at job start Tue Mar 31 2020 12:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48504 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47333 * 300.00153 * 3 2 1 6 6 H 1.48503 * 109.47104 * 60.00557 * 3 2 1 7 7 C 1.39929 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00441 * 191.75585 * 7 2 1 9 9 C 1.41410 * 120.00132 * 11.74632 * 7 2 1 10 10 C 1.40770 * 120.21183 * 209.49360 * 9 7 2 11 11 C 1.37651 * 119.88411 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.31878 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.43291 * 359.97438 * 12 11 10 14 14 N 1.39957 * 119.95036 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99701 * 33.52840 * 14 13 12 16 16 O 1.21593 * 119.99970 * 7.15527 * 15 14 13 17 17 N 1.34771 * 120.00242 * 187.15851 * 15 14 13 18 18 C 1.46921 * 120.63499 * 175.12910 * 17 15 14 19 19 C 1.52766 * 109.00958 * 233.58339 * 18 17 15 20 20 C 1.53039 * 109.38100 * 305.58543 * 19 18 17 21 21 C 1.50706 * 109.44572 * 181.25296 * 20 19 18 22 22 O 1.20822 * 119.99918 * 239.93660 * 21 20 19 23 23 O 1.34227 * 119.99890 * 59.94034 * 21 20 19 24 24 C 1.53042 * 109.53802 * 61.24122 * 20 19 18 25 25 C 1.46932 * 120.63115 * 355.40878 * 17 15 14 26 26 C 1.38273 * 120.10406 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99527 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.06255 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.83966 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.78342 * 179.72823 * 12 11 10 31 31 H 0.97000 * 120.00430 * 213.52165 * 14 13 12 32 32 H 1.09003 * 109.58734 * 353.41539 * 18 17 15 33 33 H 1.08997 * 109.59215 * 113.84085 * 18 17 15 34 34 H 1.08998 * 109.56529 * 185.55125 * 19 18 17 35 35 H 1.09003 * 109.38490 * 65.51549 * 19 18 17 36 36 H 1.09000 * 109.46055 * 301.21690 * 20 19 18 37 37 H 0.96703 * 116.99529 * 179.97438 * 23 21 20 38 38 H 1.09002 * 109.49797 * 178.67801 * 24 20 19 39 39 H 1.08995 * 109.52434 * 58.60202 * 24 20 19 40 40 H 1.08996 * 109.58487 * 246.16021 * 25 17 15 41 41 H 1.09004 * 109.58493 * 6.43618 * 25 17 15 42 42 H 1.08000 * 120.16203 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0709 -1.2218 0.1900 9 6 1.3230 -2.4235 -0.2504 10 6 1.7818 -3.6268 0.3183 11 6 1.1097 -4.8023 0.0711 12 6 -0.0165 -4.8076 -0.7356 13 6 -0.4818 -3.6251 -1.3050 14 7 -1.6203 -3.6422 -2.1188 15 6 -2.6203 -4.5080 -1.8605 16 8 -2.5945 -5.1824 -0.8491 17 7 -3.6489 -4.6264 -2.7233 18 6 -4.6913 -5.6397 -2.5109 19 6 -4.8311 -6.4829 -3.7771 20 6 -5.0825 -5.5634 -4.9744 21 6 -5.2512 -6.3956 -6.2194 22 8 -4.4978 -6.2468 -7.1522 23 8 -6.2384 -7.3021 -6.2920 24 6 -3.8931 -4.6166 -5.1512 25 6 -3.7458 -3.7487 -3.8976 26 6 0.1797 -2.4342 -1.0684 27 1 -0.4849 0.8401 0.0004 28 1 2.6590 -3.6275 0.9482 29 1 1.4625 -5.7251 0.5074 30 1 -0.5346 -5.7356 -0.9274 31 1 -1.6896 -3.0309 -2.8687 32 1 -4.4123 -6.2815 -1.6752 33 1 -5.6402 -5.1483 -2.2959 34 1 -5.6678 -7.1724 -3.6660 35 1 -3.9130 -7.0479 -3.9386 36 1 -5.9875 -4.9812 -4.8014 37 1 -6.3070 -7.8118 -7.1110 38 1 -4.0623 -3.9779 -6.0182 39 1 -2.9834 -5.1983 -5.3000 40 1 -4.6159 -3.0999 -3.7980 41 1 -2.8441 -3.1412 -3.9751 42 1 -0.1806 -1.5164 -1.5091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313410303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:17 Heat of formation + Delta-G solvation = -96.284602 kcal Electronic energy + Delta-G solvation = -26280.177174 eV Core-core repulsion = 22417.823235 eV Total energy + Delta-G solvation = -3862.353939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99285 -40.11670 -38.02476 -36.88859 -36.40133 -34.34765 -33.49904 -32.85901 -31.31258 -29.49205 -28.39774 -26.48763 -25.19143 -23.65735 -22.94683 -21.30757 -21.13322 -20.31737 -19.22001 -18.39294 -18.19459 -17.35478 -16.92519 -16.08022 -15.92022 -15.34290 -15.27896 -14.68842 -14.47697 -14.41847 -14.04706 -14.03493 -13.41431 -13.36989 -12.93404 -12.78118 -12.60321 -12.32693 -12.14870 -11.88629 -11.71621 -11.55478 -11.24312 -11.13452 -11.03594 -11.03051 -10.72576 -10.68319 -10.43060 -9.97134 -9.86829 -9.50453 -9.29359 -8.92138 -8.62961 -7.29545 -6.88649 -6.64295 -4.34788 1.85315 2.63229 2.68627 2.86070 2.96497 3.09765 3.15304 3.24503 3.68057 3.97649 4.11170 4.23335 4.40023 4.59546 4.71276 4.74343 4.95580 5.02422 5.11255 5.31937 5.38965 5.48745 5.56107 5.69145 5.74766 5.76851 5.93905 6.14724 6.26056 6.47605 6.68039 6.73356 6.82474 7.00582 7.10875 7.23629 7.36189 7.53637 7.67594 7.83782 7.98634 8.07313 8.28434 8.42723 8.64395 8.93717 8.94295 9.05716 10.28314 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.002861 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.671155 B = 9783.158699 C =10455.850995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.225 4.225 11 C -0.088 4.088 12 C -0.221 4.221 13 C 0.161 3.839 14 N -0.677 5.677 15 C 0.706 3.294 16 O -0.570 6.570 17 N -0.636 5.636 18 C 0.133 3.867 19 C -0.127 4.127 20 C -0.077 4.077 21 C 0.483 3.517 22 O -0.513 6.513 23 O -0.516 6.516 24 C -0.121 4.121 25 C 0.112 3.888 26 C -0.178 4.178 27 H 0.277 0.723 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.395 0.605 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -7.397 -11.850 19.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.497 4.497 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.245 4.245 11 C -0.107 4.107 12 C -0.242 4.242 13 C 0.068 3.932 14 N -0.325 5.325 15 C 0.408 3.592 16 O -0.446 6.446 17 N -0.375 5.375 18 C 0.010 3.990 19 C -0.165 4.165 20 C -0.097 4.097 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.328 6.328 24 C -0.159 4.159 25 C -0.011 4.011 26 C -0.200 4.200 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.232 0.768 32 H 0.119 0.881 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.268 0.732 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.185 -7.474 -10.993 18.723 hybrid contribution 0.093 0.833 -1.012 1.315 sum -13.092 -6.640 -12.006 18.964 Atomic orbital electron populations 1.69823 1.07341 1.28641 1.37286 1.25855 0.94788 1.01055 0.92487 0.86267 0.80865 0.81179 0.78384 1.18534 1.19931 1.20125 1.19530 0.96125 0.90407 1.43599 0.90433 1.17358 0.90656 0.92202 0.87945 1.21078 1.03467 0.93465 1.06444 1.20423 0.95441 0.96636 0.98238 1.20317 1.00169 0.95924 1.07834 1.17430 0.86124 0.94588 0.95012 1.42777 1.17657 1.39154 1.32943 1.15830 0.79308 0.81253 0.82821 1.90926 1.78481 1.48837 1.26350 1.47312 1.25876 1.38152 1.26185 1.21290 0.90203 0.90074 0.97478 1.21913 1.03637 0.97733 0.93226 1.21067 1.01863 0.96128 0.90611 1.23565 0.76825 0.77882 0.89227 1.90737 1.43641 1.66262 1.39456 1.84539 1.51885 1.50155 1.46225 1.21874 0.97681 0.98046 0.98316 1.21618 1.02973 0.92284 0.84263 1.21019 1.00977 0.94290 1.03721 0.91246 0.88838 0.89048 0.88090 0.76831 0.88078 0.91438 0.89210 0.90743 0.86962 0.73210 0.89614 0.90176 0.90883 0.89560 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.83 10.94 55.55 0.61 -20.22 16 2 C 0.07 1.86 5.23 -17.35 -0.09 1.77 16 3 Si 0.91 18.71 29.58 -169.99 -5.03 13.68 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.35 9.05 -37.74 -0.34 -12.69 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.12 3.25 5.53 -106.85 -0.59 2.66 16 10 C -0.22 -5.63 9.79 -38.84 -0.38 -6.01 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.49 16 12 C -0.22 -5.34 8.65 -39.10 -0.34 -5.68 16 13 C 0.16 3.81 6.25 -83.76 -0.52 3.28 16 14 N -0.68 -13.06 5.25 -14.27 -0.07 -13.14 16 15 C 0.71 13.16 8.00 -86.92 -0.70 12.47 16 16 O -0.57 -12.86 13.56 5.28 0.07 -12.79 16 17 N -0.64 -8.43 2.98 -178.76 -0.53 -8.96 16 18 C 0.13 1.42 6.39 -3.93 -0.03 1.40 16 19 C -0.13 -1.06 5.28 -26.83 -0.14 -1.20 16 20 C -0.08 -0.61 2.59 -91.73 -0.24 -0.84 16 21 C 0.48 4.29 7.63 36.01 0.27 4.56 16 22 O -0.51 -6.25 16.74 -18.75 -0.31 -6.56 16 23 O -0.52 -3.32 13.30 -39.25 -0.52 -3.85 16 24 C -0.12 -1.08 4.65 -26.61 -0.12 -1.20 16 25 C 0.11 1.10 6.43 -3.71 -0.02 1.08 16 26 C -0.18 -4.56 8.56 -38.68 -0.33 -4.89 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.10 2.42 6.48 -52.48 -0.34 2.08 16 31 H 0.40 6.35 6.28 -40.82 -0.26 6.09 16 32 H 0.10 1.28 7.03 -51.93 -0.37 0.92 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.41 1.05 9.10 45.56 0.41 1.47 16 38 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 39 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.85 5.58 -51.93 -0.29 0.56 16 42 H 0.12 3.13 6.31 -52.49 -0.33 2.79 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -33.94 347.64 -9.03 -42.97 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.51 Total: 11.44 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.97 Total: -7.81 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.00 Total: -42.32 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.76 Total: -23.20 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.94 -9.03 -42.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.314 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds