Wall clock time and date at job start Tue Mar 31 2020 12:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 120.00205 * 2 1 4 4 H 1.48504 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47333 * 300.00153 * 3 2 1 6 6 H 1.48503 * 109.47104 * 60.00557 * 3 2 1 7 7 C 1.39929 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00441 * 191.75585 * 7 2 1 9 9 C 1.41410 * 120.00132 * 11.74632 * 7 2 1 10 10 C 1.40770 * 120.21183 * 209.49360 * 9 7 2 11 11 C 1.37651 * 119.88411 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.31878 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.43291 * 359.97438 * 12 11 10 14 14 N 1.39957 * 119.95036 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99701 * 33.52840 * 14 13 12 16 16 O 1.21593 * 119.99970 * 7.15527 * 15 14 13 17 17 N 1.34771 * 120.00242 * 187.15851 * 15 14 13 18 18 C 1.46921 * 120.63499 * 175.12910 * 17 15 14 19 19 C 1.52766 * 109.00958 * 233.58339 * 18 17 15 20 20 C 1.53039 * 109.38100 * 305.58543 * 19 18 17 21 21 C 1.50706 * 109.44572 * 181.25296 * 20 19 18 22 22 O 1.20822 * 119.99918 * 239.93660 * 21 20 19 23 23 O 1.34227 * 119.99890 * 59.94034 * 21 20 19 24 24 C 1.53042 * 109.53802 * 61.24122 * 20 19 18 25 25 C 1.46932 * 120.63115 * 355.40878 * 17 15 14 26 26 C 1.38273 * 120.10406 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99527 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.06255 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.83966 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.78342 * 179.72823 * 12 11 10 31 31 H 0.97000 * 120.00430 * 213.52165 * 14 13 12 32 32 H 1.09003 * 109.58734 * 353.41539 * 18 17 15 33 33 H 1.08997 * 109.59215 * 113.84085 * 18 17 15 34 34 H 1.08998 * 109.56529 * 185.55125 * 19 18 17 35 35 H 1.09003 * 109.38490 * 65.51549 * 19 18 17 36 36 H 1.09000 * 109.46055 * 301.21690 * 20 19 18 37 37 H 0.96703 * 116.99529 * 179.97438 * 23 21 20 38 38 H 1.09002 * 109.49797 * 178.67801 * 24 20 19 39 39 H 1.08995 * 109.52434 * 58.60202 * 24 20 19 40 40 H 1.08996 * 109.58487 * 246.16021 * 25 17 15 41 41 H 1.09004 * 109.58493 * 6.43618 * 25 17 15 42 42 H 1.08000 * 120.16203 * 180.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0079 -1.2118 -0.0005 8 1 3.0709 -1.2218 0.1900 9 6 1.3230 -2.4235 -0.2504 10 6 1.7818 -3.6268 0.3183 11 6 1.1097 -4.8023 0.0711 12 6 -0.0165 -4.8076 -0.7356 13 6 -0.4818 -3.6251 -1.3050 14 7 -1.6203 -3.6422 -2.1188 15 6 -2.6203 -4.5080 -1.8605 16 8 -2.5945 -5.1824 -0.8491 17 7 -3.6489 -4.6264 -2.7233 18 6 -4.6913 -5.6397 -2.5109 19 6 -4.8311 -6.4829 -3.7771 20 6 -5.0825 -5.5634 -4.9744 21 6 -5.2512 -6.3956 -6.2194 22 8 -4.4978 -6.2468 -7.1522 23 8 -6.2384 -7.3021 -6.2920 24 6 -3.8931 -4.6166 -5.1512 25 6 -3.7458 -3.7487 -3.8976 26 6 0.1797 -2.4342 -1.0684 27 1 -0.4849 0.8401 0.0004 28 1 2.6590 -3.6275 0.9482 29 1 1.4625 -5.7251 0.5074 30 1 -0.5346 -5.7356 -0.9274 31 1 -1.6896 -3.0309 -2.8687 32 1 -4.4123 -6.2815 -1.6752 33 1 -5.6402 -5.1483 -2.2959 34 1 -5.6678 -7.1724 -3.6660 35 1 -3.9130 -7.0479 -3.9386 36 1 -5.9875 -4.9812 -4.8014 37 1 -6.3070 -7.8118 -7.1110 38 1 -4.0623 -3.9779 -6.0182 39 1 -2.9834 -5.1983 -5.3000 40 1 -4.6159 -3.0999 -3.7980 41 1 -2.8441 -3.1412 -3.9751 42 1 -0.1806 -1.5164 -1.5091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:16 Heat of formation + Delta-G solvation = -118.179269 kcal Electronic energy + Delta-G solvation = -26281.126598 eV Core-core repulsion = 22417.823235 eV Total energy + Delta-G solvation = -3863.303363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93860 -41.24513 -39.46979 -38.25053 -37.09910 -36.04292 -35.17894 -34.04002 -32.18037 -31.42790 -30.08625 -27.48781 -27.12395 -24.48117 -23.99640 -23.06131 -22.49139 -21.48023 -20.55676 -19.46141 -19.17545 -18.99459 -17.66109 -17.58810 -17.05713 -16.66606 -16.60162 -16.34371 -16.02823 -15.51799 -15.08811 -14.92540 -14.72757 -14.55144 -14.30761 -14.26257 -14.03567 -13.58121 -13.40616 -13.03650 -12.93161 -12.77472 -12.59537 -12.54926 -12.33910 -12.17443 -11.88133 -11.81811 -11.70792 -11.69295 -11.46828 -11.24284 -11.06838 -10.72445 -9.74699 -9.26108 -8.71926 -8.51888 -6.35045 0.89635 1.06523 1.18267 1.41995 1.50747 1.56629 1.62404 2.06244 2.19434 2.25294 2.80369 2.90697 3.49606 3.65997 3.73811 3.93401 3.95645 4.22207 4.31086 4.35253 4.45422 4.62145 4.68653 4.73141 4.74594 4.82186 4.86557 4.93655 5.03896 5.13287 5.17003 5.20780 5.22086 5.35699 5.55180 5.62420 5.74598 5.83769 5.97716 6.11248 6.12872 6.39728 6.69315 6.92260 6.97722 6.99009 7.02722 7.54301 8.41446 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020543 B = 0.002861 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.671155 B = 9783.158699 C =10455.850995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.093 3.907 10 C -0.244 4.244 11 C -0.087 4.087 12 C -0.234 4.234 13 C 0.167 3.833 14 N -0.675 5.675 15 C 0.700 3.300 16 O -0.615 6.615 17 N -0.625 5.625 18 C 0.128 3.872 19 C -0.115 4.115 20 C -0.075 4.075 21 C 0.490 3.510 22 O -0.552 6.552 23 O -0.509 6.509 24 C -0.114 4.114 25 C 0.108 3.892 26 C -0.196 4.196 27 H 0.285 0.715 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.053 0.947 36 H 0.144 0.856 37 H 0.427 0.573 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -6.770 -12.899 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.090 3.910 10 C -0.264 4.264 11 C -0.105 4.105 12 C -0.255 4.255 13 C 0.073 3.927 14 N -0.324 5.324 15 C 0.402 3.598 16 O -0.495 6.495 17 N -0.363 5.363 18 C 0.006 3.994 19 C -0.153 4.153 20 C -0.094 4.094 21 C 0.334 3.666 22 O -0.443 6.443 23 O -0.322 6.322 24 C -0.153 4.153 25 C -0.014 4.014 26 C -0.219 4.219 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.289 0.711 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.983 -6.875 -12.105 20.452 hybrid contribution 0.495 0.523 -0.729 1.025 sum -14.488 -6.352 -12.834 20.371 Atomic orbital electron populations 1.69881 1.08784 1.30117 1.37182 1.26714 0.95591 1.04297 0.91349 0.85124 0.79278 0.76252 0.78789 1.18309 1.18726 1.19496 1.19783 0.96339 0.91465 1.45250 0.90517 1.17770 0.91502 0.93155 0.88565 1.21254 1.04291 0.93621 1.07228 1.20731 0.94872 0.97384 0.97536 1.20479 1.00518 0.96096 1.08410 1.17469 0.86847 0.93821 0.94527 1.42650 1.16917 1.39976 1.32882 1.16036 0.80054 0.80539 0.83145 1.90886 1.79663 1.50349 1.28562 1.47398 1.24495 1.38624 1.25788 1.21530 0.90267 0.89720 0.97924 1.21804 1.03684 0.97583 0.92255 1.21086 1.02566 0.95926 0.89781 1.23639 0.76425 0.77750 0.88815 1.90736 1.45138 1.67520 1.40915 1.84493 1.50636 1.49613 1.47469 1.21780 0.97329 0.98081 0.98093 1.21896 1.04204 0.92208 0.83116 1.20952 1.01647 0.94571 1.04692 0.90402 0.87940 0.86254 0.88132 0.75151 0.90455 0.88453 0.86742 0.92785 0.83802 0.71150 0.88269 0.92614 0.87760 0.89992 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.55 10.94 21.82 0.24 -43.31 16 2 C 0.03 1.71 5.23 85.25 0.45 2.16 16 3 Si 0.98 38.17 29.58 68.60 2.03 40.20 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.01 9.05 23.46 0.21 -26.80 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.09 5.13 5.53 -21.31 -0.12 5.01 16 10 C -0.24 -12.52 9.79 22.75 0.22 -12.30 16 11 C -0.09 -4.14 10.02 22.20 0.22 -3.92 16 12 C -0.23 -11.50 8.65 22.58 0.20 -11.31 16 13 C 0.17 8.12 6.25 38.09 0.24 8.36 16 14 N -0.67 -26.38 5.25 -317.33 -1.66 -28.04 16 15 C 0.70 26.25 8.00 179.06 1.43 27.68 16 16 O -0.61 -28.33 13.56 -4.01 -0.05 -28.38 16 17 N -0.63 -15.86 2.98 -837.75 -2.50 -18.36 16 18 C 0.13 2.50 6.39 86.22 0.55 3.05 16 19 C -0.11 -1.67 5.28 30.53 0.16 -1.51 16 20 C -0.07 -0.95 2.59 -11.51 -0.03 -0.98 16 21 C 0.49 7.54 7.63 71.24 0.54 8.08 16 22 O -0.55 -12.73 16.74 21.98 0.37 -12.36 16 23 O -0.51 -5.02 13.30 -51.39 -0.68 -5.70 16 24 C -0.11 -1.82 4.65 30.67 0.14 -1.68 16 25 C 0.11 1.90 6.43 86.36 0.56 2.45 16 26 C -0.20 -10.37 8.56 22.85 0.20 -10.18 16 27 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 28 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 30 H 0.10 4.93 6.48 -2.91 -0.02 4.91 16 31 H 0.41 13.22 6.28 -92.71 -0.58 12.64 16 32 H 0.08 1.94 7.03 -2.39 -0.02 1.92 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.15 8.08 -2.39 -0.02 1.14 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.43 1.05 9.10 -74.06 -0.67 0.37 16 38 H 0.10 1.36 8.07 -2.39 -0.02 1.34 16 39 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.52 5.58 -2.39 -0.01 1.51 16 42 H 0.11 6.00 6.31 -2.91 -0.02 5.98 16 Total: -1.00 -75.86 347.64 2.53 -73.33 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.18 Total: 34.50 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.97 Total: -11.87 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -3.92 Total: -89.71 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.37 Total: -46.44 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -75.86 2.53 -73.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.850 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds