Wall clock time and date at job start Tue Mar 31 2020 12:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46971 * 274.96247 * 3 2 1 5 5 H 1.48493 * 109.47526 * 34.96272 * 3 2 1 6 6 H 1.48499 * 109.47319 * 154.96573 * 3 2 1 7 7 C 1.39929 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00148 * 164.59979 * 7 2 1 9 9 C 1.41403 * 119.99922 * 344.60487 * 7 2 1 10 10 C 1.40777 * 120.21045 * 335.37650 * 9 7 2 11 11 C 1.37648 * 119.88646 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.31699 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.43109 * 359.97438 * 12 11 10 14 14 N 1.39951 * 119.94482 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99923 * 144.37579 * 14 13 12 16 16 O 1.21586 * 120.00090 * 4.52117 * 15 14 13 17 17 N 1.34772 * 119.99982 * 184.52285 * 15 14 13 18 18 C 1.46506 * 119.99794 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46892 * 179.97438 * 18 17 15 20 20 C 1.50708 * 112.85221 * 48.80593 * 19 18 17 21 21 O 1.20822 * 119.99892 * 129.66278 * 20 19 18 22 22 O 1.34231 * 119.99558 * 309.66468 * 20 19 18 23 23 C 1.53776 * 113.61796 * 277.49819 * 19 18 17 24 24 C 1.53790 * 87.08336 * 220.02159 * 23 19 18 25 25 C 1.53777 * 87.07916 * 25.42867 * 24 23 19 26 26 C 1.38275 * 120.10728 * 0.27932 * 13 12 11 27 27 H 0.97007 * 119.99608 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.06111 * 0.02562 * 10 9 7 29 29 H 1.07991 * 119.84350 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.78428 * 179.97438 * 12 11 10 31 31 H 0.97000 * 120.00108 * 324.37880 * 14 13 12 32 32 H 0.97002 * 120.00596 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46913 * 299.99597 * 18 17 15 34 34 H 1.08998 * 109.47049 * 60.00208 * 18 17 15 35 35 H 0.96696 * 116.99881 * 179.97438 * 22 20 19 36 36 H 1.09006 * 113.61417 * 334.56673 * 23 19 18 37 37 H 1.08999 * 113.61747 * 105.47174 * 23 19 18 38 38 H 1.08998 * 113.61059 * 270.88116 * 24 23 19 39 39 H 1.08998 * 113.61138 * 139.98073 * 24 23 19 40 40 H 1.08995 * 113.61409 * 220.02085 * 25 24 23 41 41 H 1.09004 * 113.61554 * 89.11677 * 25 24 23 42 42 H 1.07992 * 120.16041 * 179.70288 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1070 -1.3949 5 1 1.4962 2.6202 0.8022 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2118 0.0005 8 1 3.0589 -1.2287 -0.2478 9 6 1.3390 -2.4143 0.3262 10 6 0.1798 -2.3862 1.1245 11 6 -0.4664 -3.5607 1.4370 12 6 0.0187 -4.7714 0.9700 13 6 1.1642 -4.8146 0.1794 14 7 1.6450 -6.0432 -0.2873 15 6 2.2065 -6.1267 -1.5097 16 8 2.3701 -5.1213 -2.1736 17 7 2.5865 -7.3247 -1.9963 18 6 3.1974 -7.4153 -3.3249 19 6 3.5331 -8.8758 -3.6332 20 6 2.3823 -9.8106 -3.3627 21 8 2.0359 -10.6024 -4.2070 22 8 1.7422 -9.7633 -2.1838 23 6 4.8653 -9.3436 -3.0241 24 6 5.1073 -10.1069 -4.3371 25 6 4.1820 -9.0809 -5.0123 26 6 1.8303 -3.6459 -0.1409 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2023 -1.4447 1.4905 29 1 -1.3553 -3.5384 2.0498 30 1 -0.4949 -5.6878 1.2208 31 1 1.5742 -6.8347 0.2689 32 1 2.4557 -8.1269 -1.4670 33 1 2.4998 -7.0369 -4.0721 34 1 4.1106 -6.8207 -3.3462 35 1 1.0101 -10.3821 -2.0566 36 1 5.5750 -8.5343 -2.8524 37 1 4.7448 -9.9933 -2.1572 38 1 4.7063 -11.1204 -4.3332 39 1 6.1391 -10.0602 -4.6854 40 1 3.5099 -9.5184 -5.7504 41 1 4.7048 -8.1997 -5.3841 42 1 2.7214 -3.6788 -0.7500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313485065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:09 Heat of formation + Delta-G solvation = -72.779919 kcal Electronic energy + Delta-G solvation = -26134.534318 eV Core-core repulsion = 22273.199618 eV Total energy + Delta-G solvation = -3861.334700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50087 -39.72911 -38.55930 -37.27069 -36.47382 -34.48456 -34.05938 -32.91443 -29.73716 -29.31248 -27.50526 -26.21299 -25.24040 -24.78930 -22.65954 -21.42306 -20.76219 -20.11420 -19.72638 -18.55770 -17.74085 -17.49590 -16.74049 -16.29988 -15.64935 -15.27880 -15.14130 -14.97129 -14.71784 -14.58821 -14.31819 -13.89903 -13.61424 -12.99111 -12.88693 -12.84119 -12.60807 -12.22045 -12.09595 -11.93377 -11.60225 -11.42992 -11.25123 -11.03643 -10.92504 -10.80611 -10.75198 -10.61786 -10.43309 -10.10260 -9.67475 -9.47152 -9.14174 -8.84683 -8.76902 -7.36094 -6.80318 -6.63369 -4.26189 1.77701 2.52031 2.80465 2.93454 3.09648 3.13461 3.18410 3.27239 3.77937 3.94087 4.02036 4.02124 4.32094 4.35391 4.60208 4.72282 4.81518 5.06277 5.23863 5.31496 5.43961 5.48460 5.56302 5.64111 5.68880 5.80713 5.90827 6.11372 6.31166 6.47772 6.64270 6.89063 6.90717 7.12170 7.19690 7.33226 7.41847 7.53601 7.77774 7.93945 8.08784 8.18587 8.34030 8.54627 8.74849 8.98412 9.05552 9.14956 10.29623 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.002791 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.264366 B =10028.252543 C =10948.232027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.077 0.923 9 C 0.117 3.883 10 C -0.175 4.175 11 C -0.093 4.093 12 C -0.264 4.264 13 C 0.167 3.833 14 N -0.681 5.681 15 C 0.696 3.304 16 O -0.567 6.567 17 N -0.748 5.748 18 C 0.159 3.841 19 C -0.100 4.100 20 C 0.509 3.491 21 O -0.507 6.507 22 O -0.512 6.512 23 C -0.117 4.117 24 C -0.144 4.144 25 C -0.112 4.112 26 C -0.209 4.209 27 H 0.278 0.722 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.394 0.606 32 H 0.401 0.599 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -18.612 -4.196 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.095 0.905 9 C 0.114 3.886 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.285 4.285 13 C 0.074 3.926 14 N -0.327 5.327 15 C 0.397 3.603 16 O -0.442 6.442 17 N -0.411 5.411 18 C 0.034 3.966 19 C -0.101 4.101 20 C 0.350 3.650 21 O -0.394 6.394 22 O -0.325 6.325 23 C -0.155 4.155 24 C -0.182 4.182 25 C -0.149 4.149 26 C -0.231 4.231 27 H 0.089 0.911 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.227 0.773 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.274 0.726 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.165 -17.500 -5.147 19.598 hybrid contribution -0.525 -0.493 0.528 0.893 sum 6.640 -17.992 -4.620 19.727 Atomic orbital electron populations 1.69836 1.07509 1.28889 1.35990 1.25897 0.94749 1.01232 0.92387 0.86299 0.80669 0.80750 0.78974 1.19637 1.20142 1.18482 1.19560 0.97270 0.90853 1.40832 0.90529 1.17524 0.91254 0.91726 0.88088 1.21400 0.99285 0.96850 1.01939 1.20446 0.98328 0.92705 0.99754 1.20024 0.99524 0.96880 1.12116 1.17236 0.94035 0.83241 0.98059 1.42525 1.63027 1.11183 1.15951 1.15987 0.78920 0.83586 0.81831 1.90986 1.59734 1.34205 1.59296 1.45313 1.67771 1.08635 1.19411 1.21037 0.99282 0.91533 0.84734 1.22066 0.92336 0.93990 1.01725 1.22602 0.81868 0.81571 0.78913 1.90715 1.64878 1.37683 1.46163 1.84319 1.48488 1.61779 1.37893 1.23038 0.93576 1.00881 0.97983 1.22930 1.00660 0.98694 0.95897 1.22918 0.98040 1.00358 0.93615 1.21095 1.03617 0.91241 1.07114 0.91066 0.86120 0.89164 0.89476 0.77317 0.76040 0.91039 0.89871 0.72590 0.87784 0.90580 0.89813 0.90272 0.89460 0.87909 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.34 10.82 55.55 0.60 -20.74 16 2 C 0.07 1.94 5.19 -17.35 -0.09 1.85 16 3 Si 0.91 19.38 29.59 -169.99 -5.03 14.35 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.72 9.06 -37.74 -0.34 -13.06 16 8 H 0.08 2.08 7.89 -52.49 -0.41 1.67 16 9 C 0.12 3.28 5.58 -106.85 -0.60 2.69 16 10 C -0.17 -4.68 8.69 -38.84 -0.34 -5.02 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 12 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 13 C 0.17 3.86 6.28 -83.76 -0.53 3.33 16 14 N -0.68 -12.45 5.34 -14.27 -0.08 -12.53 16 15 C 0.70 12.96 8.40 -86.92 -0.73 12.23 16 16 O -0.57 -13.34 13.82 5.29 0.07 -13.26 16 17 N -0.75 -9.80 5.12 -65.22 -0.33 -10.13 16 18 C 0.16 1.82 5.14 -4.04 -0.02 1.80 16 19 C -0.10 -0.86 1.06 -154.85 -0.16 -1.02 16 20 C 0.51 4.87 7.09 36.01 0.26 5.12 16 21 O -0.51 -6.10 16.59 -18.75 -0.31 -6.41 16 22 O -0.51 -3.73 10.37 -39.26 -0.41 -4.14 16 23 C -0.12 -0.80 7.22 -25.92 -0.19 -0.98 16 24 C -0.14 -0.93 7.75 -25.92 -0.20 -1.13 16 25 C -0.11 -0.83 7.02 -25.92 -0.18 -1.01 16 26 C -0.21 -5.55 8.43 -38.68 -0.33 -5.87 16 27 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 28 H 0.12 3.31 6.07 -52.49 -0.32 2.99 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.39 5.56 8.84 -40.82 -0.36 5.20 16 32 H 0.40 4.25 5.71 -40.82 -0.23 4.02 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.94 7.94 -51.93 -0.41 0.53 16 35 H 0.41 1.42 9.10 45.56 0.41 1.83 16 36 H 0.10 0.65 7.96 -51.93 -0.41 0.24 16 37 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.74 7.41 -51.93 -0.39 0.36 16 41 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.11 3.08 6.27 -52.49 -0.33 2.75 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -34.67 352.10 -8.95 -43.62 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.54 Total: 13.95 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.24 Total: -10.01 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.19 Total: -43.40 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.65 Total: -23.81 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.67 -8.95 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.160 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds