Wall clock time and date at job start Tue Mar 31 2020 12:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48505 * 109.46971 * 274.96247 * 3 2 1 5 5 H 1.48493 * 109.47526 * 34.96272 * 3 2 1 6 6 H 1.48499 * 109.47319 * 154.96573 * 3 2 1 7 7 C 1.39929 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00148 * 164.59979 * 7 2 1 9 9 C 1.41403 * 119.99922 * 344.60487 * 7 2 1 10 10 C 1.40777 * 120.21045 * 335.37650 * 9 7 2 11 11 C 1.37648 * 119.88646 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.31699 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.43109 * 359.97438 * 12 11 10 14 14 N 1.39951 * 119.94482 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99923 * 144.37579 * 14 13 12 16 16 O 1.21586 * 120.00090 * 4.52117 * 15 14 13 17 17 N 1.34772 * 119.99982 * 184.52285 * 15 14 13 18 18 C 1.46506 * 119.99794 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46892 * 179.97438 * 18 17 15 20 20 C 1.50708 * 112.85221 * 48.80593 * 19 18 17 21 21 O 1.20822 * 119.99892 * 129.66278 * 20 19 18 22 22 O 1.34231 * 119.99558 * 309.66468 * 20 19 18 23 23 C 1.53776 * 113.61796 * 277.49819 * 19 18 17 24 24 C 1.53790 * 87.08336 * 220.02159 * 23 19 18 25 25 C 1.53777 * 87.07916 * 25.42867 * 24 23 19 26 26 C 1.38275 * 120.10728 * 0.27932 * 13 12 11 27 27 H 0.97007 * 119.99608 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.06111 * 0.02562 * 10 9 7 29 29 H 1.07991 * 119.84350 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.78428 * 179.97438 * 12 11 10 31 31 H 0.97000 * 120.00108 * 324.37880 * 14 13 12 32 32 H 0.97002 * 120.00596 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46913 * 299.99597 * 18 17 15 34 34 H 1.08998 * 109.47049 * 60.00208 * 18 17 15 35 35 H 0.96696 * 116.99881 * 179.97438 * 22 20 19 36 36 H 1.09006 * 113.61417 * 334.56673 * 23 19 18 37 37 H 1.08999 * 113.61747 * 105.47174 * 23 19 18 38 38 H 1.08998 * 113.61059 * 270.88116 * 24 23 19 39 39 H 1.08998 * 113.61138 * 139.98073 * 24 23 19 40 40 H 1.08995 * 113.61409 * 220.02085 * 25 24 23 41 41 H 1.09004 * 113.61554 * 89.11677 * 25 24 23 42 42 H 1.07992 * 120.16041 * 179.70288 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3849 2.1070 -1.3949 5 1 1.4962 2.6202 0.8022 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2118 0.0005 8 1 3.0589 -1.2287 -0.2478 9 6 1.3390 -2.4143 0.3262 10 6 0.1798 -2.3862 1.1245 11 6 -0.4664 -3.5607 1.4370 12 6 0.0187 -4.7714 0.9700 13 6 1.1642 -4.8146 0.1794 14 7 1.6450 -6.0432 -0.2873 15 6 2.2065 -6.1267 -1.5097 16 8 2.3701 -5.1213 -2.1736 17 7 2.5865 -7.3247 -1.9963 18 6 3.1974 -7.4153 -3.3249 19 6 3.5331 -8.8758 -3.6332 20 6 2.3823 -9.8106 -3.3627 21 8 2.0359 -10.6024 -4.2070 22 8 1.7422 -9.7633 -2.1838 23 6 4.8653 -9.3436 -3.0241 24 6 5.1073 -10.1069 -4.3371 25 6 4.1820 -9.0809 -5.0123 26 6 1.8303 -3.6459 -0.1409 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2023 -1.4447 1.4905 29 1 -1.3553 -3.5384 2.0498 30 1 -0.4949 -5.6878 1.2208 31 1 1.5742 -6.8347 0.2689 32 1 2.4557 -8.1269 -1.4670 33 1 2.4998 -7.0369 -4.0721 34 1 4.1106 -6.8207 -3.3462 35 1 1.0101 -10.3821 -2.0566 36 1 5.5750 -8.5343 -2.8524 37 1 4.7448 -9.9933 -2.1572 38 1 4.7063 -11.1204 -4.3332 39 1 6.1391 -10.0602 -4.6854 40 1 3.5099 -9.5184 -5.7504 41 1 4.7048 -8.1997 -5.3841 42 1 2.7214 -3.6788 -0.7500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313485065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:08 Heat of formation + Delta-G solvation = -96.636939 kcal Electronic energy + Delta-G solvation = -26135.568836 eV Core-core repulsion = 22273.199618 eV Total energy + Delta-G solvation = -3862.369218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27055 -41.22915 -39.34653 -38.95631 -37.27952 -36.19380 -35.39793 -34.72700 -31.70529 -30.58061 -28.95975 -27.21518 -26.78843 -25.71128 -23.65772 -22.86499 -22.57792 -21.66153 -20.41515 -19.70238 -19.49930 -18.60510 -17.73784 -17.35322 -17.04026 -16.83201 -16.51385 -16.36933 -15.91562 -15.68684 -15.43559 -15.16615 -14.98169 -14.65760 -14.47962 -13.94518 -13.53723 -13.46897 -13.41422 -13.12232 -12.91836 -12.79371 -12.64967 -12.54589 -12.18814 -12.05918 -11.97117 -11.62959 -11.54565 -11.44181 -11.42441 -11.25090 -10.98258 -10.61993 -10.10206 -9.34333 -8.65808 -8.56784 -6.33259 0.96646 1.02647 1.08399 1.37708 1.49620 1.54677 1.67748 1.92616 2.21080 2.24962 2.77751 3.13298 3.38544 3.43586 3.65513 3.79320 3.80504 4.09302 4.36816 4.51589 4.55296 4.68718 4.69280 4.74459 4.79936 4.96829 5.03038 5.05888 5.10193 5.15608 5.18415 5.25246 5.36292 5.37853 5.44687 5.54491 5.77371 5.88515 6.10790 6.17249 6.24888 6.41256 6.73494 6.87262 6.98574 7.05792 7.19475 7.65819 8.37328 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.002791 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.264366 B =10028.252543 C =10948.232027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.065 0.935 9 C 0.086 3.914 10 C -0.201 4.201 11 C -0.092 4.092 12 C -0.251 4.251 13 C 0.174 3.826 14 N -0.668 5.668 15 C 0.693 3.307 16 O -0.620 6.620 17 N -0.722 5.722 18 C 0.157 3.843 19 C -0.100 4.100 20 C 0.511 3.489 21 O -0.535 6.535 22 O -0.509 6.509 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.113 4.113 26 C -0.236 4.236 27 H 0.288 0.712 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.418 0.582 32 H 0.416 0.584 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.432 0.568 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -20.258 -3.508 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.084 0.916 9 C 0.084 3.916 10 C -0.221 4.221 11 C -0.111 4.111 12 C -0.273 4.273 13 C 0.080 3.920 14 N -0.317 5.317 15 C 0.393 3.607 16 O -0.499 6.499 17 N -0.384 5.384 18 C 0.033 3.967 19 C -0.102 4.102 20 C 0.354 3.646 21 O -0.424 6.424 22 O -0.324 6.324 23 C -0.148 4.148 24 C -0.174 4.174 25 C -0.151 4.151 26 C -0.258 4.258 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.255 0.745 32 H 0.258 0.742 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.296 0.704 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.309 -19.255 -4.428 21.066 hybrid contribution -0.638 -0.179 0.307 0.730 sum 6.671 -19.434 -4.121 20.956 Atomic orbital electron populations 1.69879 1.08847 1.30349 1.36261 1.26753 0.95625 1.04426 0.91269 0.85176 0.79183 0.75922 0.79274 1.19060 1.18394 1.18322 1.19773 0.97180 0.92521 1.43494 0.91649 1.17866 0.92309 0.92487 0.88979 1.21375 0.99886 0.97631 1.03224 1.20824 0.98818 0.92165 0.99285 1.20450 0.98560 0.98095 1.10146 1.17289 0.93663 0.83998 0.97044 1.42264 1.62597 1.10502 1.16309 1.16214 0.78640 0.84276 0.81569 1.90968 1.61741 1.36543 1.60649 1.45119 1.66128 1.07304 1.19891 1.21156 0.98735 0.93678 0.83152 1.22109 0.93123 0.91778 1.03174 1.22711 0.81785 0.81146 0.78971 1.90712 1.65647 1.38972 1.47104 1.84234 1.49102 1.62315 1.36717 1.23074 0.92136 1.01177 0.98408 1.22874 1.01296 0.97864 0.95360 1.22992 0.98080 1.01262 0.92719 1.21053 1.03936 0.92556 1.08207 0.90175 0.87586 0.85985 0.85090 0.74495 0.74209 0.92695 0.89664 0.70420 0.86919 0.89737 0.90500 0.88531 0.90687 0.86644 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.51 10.82 21.82 0.24 -45.27 16 2 C 0.03 1.79 5.19 85.25 0.44 2.23 16 3 Si 0.98 40.62 29.59 68.60 2.03 42.65 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.50 -29.41 9.06 23.46 0.21 -29.20 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.78 16 9 C 0.09 5.05 5.58 -21.31 -0.12 4.93 16 10 C -0.20 -11.00 8.69 22.75 0.20 -10.80 16 11 C -0.09 -4.26 10.02 22.20 0.22 -4.04 16 12 C -0.25 -10.62 9.97 22.58 0.23 -10.39 16 13 C 0.17 7.93 6.28 38.10 0.24 8.17 16 14 N -0.67 -23.32 5.34 -317.33 -1.69 -25.01 16 15 C 0.69 25.34 8.40 179.06 1.50 26.84 16 16 O -0.62 -29.90 13.82 -3.99 -0.06 -29.96 16 17 N -0.72 -17.80 5.12 -478.53 -2.45 -20.24 16 18 C 0.16 3.46 5.14 86.38 0.44 3.90 16 19 C -0.10 -1.58 1.06 -52.40 -0.06 -1.63 16 20 C 0.51 8.93 7.09 71.24 0.51 9.43 16 21 O -0.53 -12.28 16.59 21.98 0.36 -11.92 16 22 O -0.51 -6.12 10.37 -51.43 -0.53 -6.65 16 23 C -0.11 -1.24 7.22 31.12 0.22 -1.01 16 24 C -0.14 -1.48 7.75 31.12 0.24 -1.24 16 25 C -0.11 -1.54 7.02 31.12 0.22 -1.32 16 26 C -0.24 -12.94 8.43 22.85 0.19 -12.75 16 27 H 0.29 14.18 8.30 -92.70 -0.77 13.42 16 28 H 0.11 6.01 6.07 -2.91 -0.02 6.00 16 29 H 0.12 4.79 8.06 -2.92 -0.02 4.76 16 30 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 31 H 0.42 10.42 8.84 -92.71 -0.82 9.60 16 32 H 0.42 7.72 5.71 -92.71 -0.53 7.19 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16 35 H 0.43 1.78 9.10 -74.06 -0.67 1.11 16 36 H 0.11 1.11 7.96 -2.38 -0.02 1.09 16 37 H 0.08 0.83 8.10 -2.39 -0.02 0.81 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 1.23 7.41 -2.39 -0.02 1.21 16 41 H 0.12 1.26 8.10 -2.38 -0.02 1.24 16 42 H 0.09 5.25 6.27 -2.91 -0.02 5.23 16 Total: -1.00 -79.18 352.10 1.66 -77.52 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.93 Total: 35.76 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.70 Total: -16.87 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -3.91 Total: -90.53 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.22 Total: -48.53 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -79.18 1.66 -77.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.120 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds