Wall clock time and date at job start Tue Mar 31 2020 12:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99519 * 2 1 4 4 H 1.48493 * 109.47238 * 240.00074 * 3 2 1 5 5 H 1.48494 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46831 * 120.00221 * 3 2 1 7 7 C 1.39927 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00343 * 185.76488 * 7 2 1 9 9 C 1.41410 * 120.00000 * 5.77505 * 7 2 1 10 10 C 1.40775 * 120.21375 * 33.91393 * 9 7 2 11 11 C 1.37640 * 119.88686 * 179.97438 * 10 9 7 12 12 C 1.38543 * 120.31831 * 359.72454 * 11 10 9 13 13 C 1.39249 * 120.42585 * 0.55715 * 12 11 10 14 14 N 1.39952 * 119.93842 * 179.72056 * 13 12 11 15 15 C 1.34772 * 120.00544 * 324.48018 * 14 13 12 16 16 O 1.21585 * 119.99844 * 4.02265 * 15 14 13 17 17 N 1.34776 * 120.00062 * 184.01972 * 15 14 13 18 18 C 1.46503 * 120.00171 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.01488 * 331.40492 * 18 17 15 20 20 C 1.54468 * 110.12042 * 92.68406 * 18 17 15 21 21 C 1.54885 * 104.09766 * 142.73262 * 20 18 17 22 22 C 1.54893 * 102.91792 * 322.29853 * 21 20 18 23 23 C 1.53871 * 110.03644 * 210.01291 * 18 17 15 24 24 H 1.09008 * 110.03405 * 121.42846 * 23 18 17 25 25 C 1.50702 * 110.03010 * 0.02562 * 23 18 17 26 26 O 1.20826 * 119.99587 * 267.95058 * 25 23 18 27 27 O 1.34223 * 120.00100 * 87.95411 * 25 23 18 28 28 C 1.38270 * 120.10739 * 359.44506 * 13 12 11 29 29 H 0.96996 * 120.00775 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05682 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.84171 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.78005 * 180.29571 * 12 11 10 33 33 H 0.97005 * 119.99892 * 144.49009 * 14 13 12 34 34 H 0.96996 * 120.00433 * 0.02562 * 17 15 14 35 35 H 1.08989 * 110.40318 * 24.14685 * 20 18 17 36 36 H 1.09000 * 110.66197 * 261.43585 * 20 18 17 37 37 H 1.09008 * 110.75785 * 203.89533 * 21 20 18 38 38 H 1.08997 * 110.76367 * 80.70987 * 21 20 18 39 39 H 1.08997 * 110.48527 * 156.52919 * 22 21 20 40 40 H 1.08998 * 110.48506 * 279.17699 * 22 21 20 41 41 H 0.96699 * 117.00036 * 179.97438 * 27 25 23 42 42 H 1.07992 * 120.15783 * 180.30028 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2124 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0839 -1.2142 0.0934 9 6 1.3064 -2.4333 -0.1243 10 6 0.1420 -2.5047 -0.9122 11 6 -0.5354 -3.6973 -1.0284 12 6 -0.0736 -4.8301 -0.3781 13 6 1.0735 -4.7730 0.4093 14 7 1.5276 -5.9222 1.0664 15 6 0.6424 -6.8108 1.5596 16 8 -0.5481 -6.6519 1.3702 17 7 1.0768 -7.8754 2.2625 18 6 0.1146 -8.8417 2.7982 19 1 -0.8374 -8.3492 2.9968 20 6 -0.0911 -9.9985 1.7954 21 6 -0.2392 -11.2529 2.6917 22 6 0.7761 -10.9864 3.8308 23 6 0.6628 -9.4701 4.0913 24 1 -0.0235 -9.2834 4.9174 25 6 2.0202 -8.8974 4.4084 26 8 3.0173 -9.4484 4.0059 27 8 2.1215 -7.7753 5.1379 28 6 1.7677 -3.5842 0.5383 29 1 -0.4851 0.8399 0.0004 30 1 -0.2188 -1.6255 -1.4252 31 1 -1.4288 -3.7512 -1.6326 32 1 -0.6092 -5.7625 -0.4791 33 1 2.4795 -6.0792 1.1670 34 1 2.0264 -8.0021 2.4139 35 1 0.7773 -10.0954 1.1439 36 1 -0.9951 -9.8413 1.2070 37 1 0.0267 -12.1551 2.1407 38 1 -1.2522 -11.3280 3.0870 39 1 0.5034 -11.5484 4.7240 40 1 1.7854 -11.2440 3.5101 41 1 3.0132 -7.4463 5.3157 42 1 2.6601 -3.5401 1.1449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313485747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:51 Heat of formation + Delta-G solvation = -104.553615 kcal Electronic energy + Delta-G solvation = -26289.389366 eV Core-core repulsion = 22426.676856 eV Total energy + Delta-G solvation = -3862.712511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24290 -39.83305 -38.15827 -37.09971 -36.31199 -34.34410 -33.75184 -32.84902 -29.97867 -29.76428 -28.67822 -27.15837 -25.16340 -23.62501 -22.06475 -21.03114 -20.90980 -20.25491 -19.97904 -18.45176 -18.21653 -17.68013 -17.14078 -16.09296 -15.53361 -15.46724 -15.22860 -15.08655 -14.74670 -14.58351 -14.13081 -13.81981 -13.45037 -13.15550 -12.85069 -12.58459 -12.22975 -12.04847 -11.94064 -11.76075 -11.62607 -11.41935 -11.31624 -11.13534 -11.09916 -11.02601 -10.93293 -10.74338 -10.52822 -10.19433 -9.55077 -9.49026 -9.26430 -9.08262 -8.89842 -7.36519 -6.86884 -6.58750 -4.34498 1.80909 2.64648 2.78189 2.87269 2.94706 3.11097 3.13742 3.24302 3.62194 4.00372 4.06021 4.14978 4.45662 4.64785 4.76022 4.95712 4.98259 5.01867 5.10392 5.22907 5.30855 5.52945 5.66613 5.67644 5.79640 5.91169 6.01429 6.18161 6.29767 6.44499 6.59372 6.72038 6.85195 6.96704 7.08923 7.26137 7.35884 7.56955 7.65979 7.80592 8.08154 8.10437 8.26865 8.39467 8.66717 8.89732 8.96631 9.02839 10.35128 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002827 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.017427 B = 9903.056316 C =10739.421056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.472 4.472 8 H 0.074 0.926 9 C 0.123 3.877 10 C -0.155 4.155 11 C -0.101 4.101 12 C -0.215 4.215 13 C 0.161 3.839 14 N -0.679 5.679 15 C 0.703 3.297 16 O -0.567 6.567 17 N -0.751 5.751 18 C 0.174 3.826 19 H 0.111 0.889 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.098 4.098 24 H 0.116 0.884 25 C 0.489 3.511 26 O -0.516 6.516 27 O -0.508 6.508 28 C -0.235 4.235 29 H 0.278 0.722 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.395 0.605 34 H 0.390 0.610 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.411 0.589 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -18.119 8.099 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.092 0.908 9 C 0.120 3.880 10 C -0.175 4.175 11 C -0.120 4.120 12 C -0.236 4.236 13 C 0.069 3.931 14 N -0.325 5.325 15 C 0.404 3.596 16 O -0.443 6.443 17 N -0.409 5.409 18 C 0.068 3.932 19 H 0.129 0.871 20 C -0.175 4.175 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.118 4.118 24 H 0.134 0.866 25 C 0.331 3.669 26 O -0.404 6.404 27 O -0.319 6.319 28 C -0.257 4.257 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.270 0.730 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.759 -18.094 7.776 19.709 hybrid contribution 1.928 0.959 0.497 2.210 sum 2.687 -17.135 8.273 19.216 Atomic orbital electron populations 1.69773 1.07258 1.28897 1.37759 1.25819 0.94851 1.00932 0.92577 0.86325 0.79868 0.80464 0.79681 1.19052 1.20464 1.19235 1.19405 0.94716 0.90073 1.46078 0.90751 1.17362 0.91485 0.91280 0.87898 1.21402 0.98429 0.96271 1.01352 1.20643 0.98480 0.93383 0.99529 1.20516 0.99890 0.98842 1.04340 1.17263 0.96995 0.83899 0.94926 1.42580 1.08368 1.22351 1.59169 1.15918 0.85655 0.79412 0.78623 1.90929 1.14359 1.76120 1.62921 1.45447 1.09470 1.26272 1.59742 1.21421 0.93368 0.88851 0.89540 0.87090 1.22904 1.03282 0.93447 0.97905 1.22457 0.99209 0.98139 0.96091 1.22486 1.02003 0.91203 0.99732 1.22142 0.91974 0.97232 1.00453 0.86579 1.23220 0.92209 0.77664 0.73796 1.90733 1.39187 1.60132 1.50396 1.84610 1.39310 1.41274 1.66713 1.20813 1.04534 0.92336 1.07992 0.91069 0.86386 0.88973 0.87397 0.77163 0.77501 0.90704 0.90084 0.90623 0.90749 0.90479 0.89249 0.72985 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.55 10.95 55.55 0.61 -20.95 16 2 C 0.07 1.89 5.31 -17.35 -0.09 1.79 16 3 Si 0.91 19.07 29.56 -169.99 -5.03 14.04 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.47 -12.59 9.04 -37.74 -0.34 -12.93 16 8 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 9 C 0.12 3.29 5.50 -106.85 -0.59 2.70 16 10 C -0.15 -4.11 8.63 -38.84 -0.34 -4.44 16 11 C -0.10 -2.49 10.02 -39.69 -0.40 -2.89 16 12 C -0.21 -5.18 8.70 -39.09 -0.34 -5.52 16 13 C 0.16 3.70 6.28 -83.76 -0.53 3.17 16 14 N -0.68 -12.44 5.34 -14.27 -0.08 -12.52 16 15 C 0.70 12.61 8.40 -86.92 -0.73 11.88 16 16 O -0.57 -12.30 13.38 5.29 0.07 -12.23 16 17 N -0.75 -9.90 4.53 -57.48 -0.26 -10.16 16 18 C 0.17 1.92 3.30 -66.70 -0.22 1.70 16 19 H 0.11 1.38 7.41 -51.93 -0.38 0.99 16 20 C -0.14 -1.31 6.56 -24.97 -0.16 -1.48 16 21 C -0.12 -0.83 6.90 -24.74 -0.17 -1.00 16 22 C -0.12 -0.83 6.31 -25.07 -0.16 -0.99 16 23 C -0.10 -0.84 3.41 -90.65 -0.31 -1.15 16 24 H 0.12 0.81 8.14 -51.92 -0.42 0.39 16 25 C 0.49 4.84 5.30 36.01 0.19 5.03 16 26 O -0.52 -6.09 15.95 -18.75 -0.30 -6.39 16 27 O -0.51 -4.55 13.42 -39.24 -0.53 -5.07 16 28 C -0.23 -5.73 9.71 -38.69 -0.38 -6.10 16 29 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.12 3.22 6.44 -52.49 -0.34 2.88 16 31 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.11 2.59 6.25 -52.49 -0.33 2.26 16 33 H 0.39 5.88 8.84 -40.82 -0.36 5.52 16 34 H 0.39 4.63 6.51 -40.82 -0.27 4.36 16 35 H 0.07 0.77 8.05 -51.94 -0.42 0.36 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.76 6.82 -51.93 -0.35 0.41 16 41 H 0.41 2.09 9.10 45.56 0.41 2.51 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -33.00 350.21 -9.33 -42.33 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -4.54 Total: 15.90 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -4.56 Total: -10.23 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.27 Total: -43.63 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.75 Total: -23.69 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.00 -9.33 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.224 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds