Wall clock time and date at job start Tue Mar 31 2020 12:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99519 * 2 1 4 4 H 1.48493 * 109.47238 * 240.00074 * 3 2 1 5 5 H 1.48494 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46831 * 120.00221 * 3 2 1 7 7 C 1.39927 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00343 * 185.76488 * 7 2 1 9 9 C 1.41410 * 120.00000 * 5.77505 * 7 2 1 10 10 C 1.40775 * 120.21375 * 33.91393 * 9 7 2 11 11 C 1.37640 * 119.88686 * 179.97438 * 10 9 7 12 12 C 1.38543 * 120.31831 * 359.72454 * 11 10 9 13 13 C 1.39249 * 120.42585 * 0.55715 * 12 11 10 14 14 N 1.39952 * 119.93842 * 179.72056 * 13 12 11 15 15 C 1.34772 * 120.00544 * 324.48018 * 14 13 12 16 16 O 1.21585 * 119.99844 * 4.02265 * 15 14 13 17 17 N 1.34776 * 120.00062 * 184.01972 * 15 14 13 18 18 C 1.46503 * 120.00171 * 180.02562 * 17 15 14 19 19 H 1.09002 * 110.01488 * 331.40492 * 18 17 15 20 20 C 1.54468 * 110.12042 * 92.68406 * 18 17 15 21 21 C 1.54885 * 104.09766 * 142.73262 * 20 18 17 22 22 C 1.54893 * 102.91792 * 322.29853 * 21 20 18 23 23 C 1.53871 * 110.03644 * 210.01291 * 18 17 15 24 24 H 1.09008 * 110.03405 * 121.42846 * 23 18 17 25 25 C 1.50702 * 110.03010 * 0.02562 * 23 18 17 26 26 O 1.20826 * 119.99587 * 267.95058 * 25 23 18 27 27 O 1.34223 * 120.00100 * 87.95411 * 25 23 18 28 28 C 1.38270 * 120.10739 * 359.44506 * 13 12 11 29 29 H 0.96996 * 120.00775 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.05682 * 0.02562 * 10 9 7 31 31 H 1.07994 * 119.84171 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.78005 * 180.29571 * 12 11 10 33 33 H 0.97005 * 119.99892 * 144.49009 * 14 13 12 34 34 H 0.96996 * 120.00433 * 0.02562 * 17 15 14 35 35 H 1.08989 * 110.40318 * 24.14685 * 20 18 17 36 36 H 1.09000 * 110.66197 * 261.43585 * 20 18 17 37 37 H 1.09008 * 110.75785 * 203.89533 * 21 20 18 38 38 H 1.08997 * 110.76367 * 80.70987 * 21 20 18 39 39 H 1.08997 * 110.48527 * 156.52919 * 22 21 20 40 40 H 1.08998 * 110.48506 * 279.17699 * 22 21 20 41 41 H 0.96699 * 117.00036 * 179.97438 * 27 25 23 42 42 H 1.07992 * 120.15783 * 180.30028 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2124 5 1 1.2771 2.7464 0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0839 -1.2142 0.0934 9 6 1.3064 -2.4333 -0.1243 10 6 0.1420 -2.5047 -0.9122 11 6 -0.5354 -3.6973 -1.0284 12 6 -0.0736 -4.8301 -0.3781 13 6 1.0735 -4.7730 0.4093 14 7 1.5276 -5.9222 1.0664 15 6 0.6424 -6.8108 1.5596 16 8 -0.5481 -6.6519 1.3702 17 7 1.0768 -7.8754 2.2625 18 6 0.1146 -8.8417 2.7982 19 1 -0.8374 -8.3492 2.9968 20 6 -0.0911 -9.9985 1.7954 21 6 -0.2392 -11.2529 2.6917 22 6 0.7761 -10.9864 3.8308 23 6 0.6628 -9.4701 4.0913 24 1 -0.0235 -9.2834 4.9174 25 6 2.0202 -8.8974 4.4084 26 8 3.0173 -9.4484 4.0059 27 8 2.1215 -7.7753 5.1379 28 6 1.7677 -3.5842 0.5383 29 1 -0.4851 0.8399 0.0004 30 1 -0.2188 -1.6255 -1.4252 31 1 -1.4288 -3.7512 -1.6326 32 1 -0.6092 -5.7625 -0.4791 33 1 2.4795 -6.0792 1.1670 34 1 2.0264 -8.0021 2.4139 35 1 0.7773 -10.0954 1.1439 36 1 -0.9951 -9.8413 1.2070 37 1 0.0267 -12.1551 2.1407 38 1 -1.2522 -11.3280 3.0870 39 1 0.5034 -11.5484 4.7240 40 1 1.7854 -11.2440 3.5101 41 1 3.0132 -7.4463 5.3157 42 1 2.6601 -3.5401 1.1449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313485747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:50 Heat of formation + Delta-G solvation = -126.099639 kcal Electronic energy + Delta-G solvation = -26290.323672 eV Core-core repulsion = 22426.676856 eV Total energy + Delta-G solvation = -3863.646816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16314 -41.17483 -39.39945 -38.50876 -37.10897 -36.08217 -35.12474 -34.47234 -31.72952 -30.70181 -30.18113 -28.30940 -27.13285 -24.42708 -23.54366 -22.81921 -21.93597 -21.68416 -20.83882 -19.71273 -19.42281 -19.08234 -18.15989 -17.38316 -16.99385 -16.71896 -16.65583 -16.30360 -16.02050 -15.95466 -15.50009 -14.90656 -14.88023 -14.64466 -14.16212 -14.07776 -13.54814 -13.46512 -12.96423 -12.88477 -12.83054 -12.74519 -12.60312 -12.52056 -12.32382 -12.10167 -12.00544 -11.95070 -11.67389 -11.49764 -11.42130 -11.23774 -11.11034 -10.71550 -10.24460 -9.33365 -8.73674 -8.49860 -6.37158 0.93628 0.98946 1.02429 1.40962 1.52474 1.53522 1.57109 2.05404 2.11465 2.25399 2.82695 3.12636 3.38073 3.43272 3.69605 3.96917 4.24281 4.29859 4.37984 4.38954 4.42272 4.46414 4.67419 4.69101 4.94192 4.99375 5.00998 5.03578 5.13291 5.14164 5.16711 5.19480 5.35200 5.36334 5.44742 5.53287 5.70051 5.77497 5.98138 6.11581 6.14865 6.37713 6.69548 6.88942 6.91743 6.96971 7.02736 7.48558 8.45003 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.002827 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.017427 B = 9903.056316 C =10739.421056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.030 3.970 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.079 0.921 9 C 0.095 3.905 10 C -0.180 4.180 11 C -0.102 4.102 12 C -0.225 4.225 13 C 0.173 3.827 14 N -0.672 5.672 15 C 0.703 3.297 16 O -0.606 6.606 17 N -0.731 5.731 18 C 0.166 3.834 19 H 0.097 0.903 20 C -0.137 4.137 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.094 4.094 24 H 0.137 0.863 25 C 0.489 3.511 26 O -0.537 6.537 27 O -0.513 6.513 28 C -0.243 4.243 29 H 0.284 0.716 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.413 0.587 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.426 0.574 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -19.188 9.444 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.533 4.533 8 H 0.097 0.903 9 C 0.093 3.907 10 C -0.201 4.201 11 C -0.121 4.121 12 C -0.246 4.246 13 C 0.079 3.921 14 N -0.320 5.320 15 C 0.403 3.597 16 O -0.484 6.484 17 N -0.389 5.389 18 C 0.061 3.939 19 H 0.115 0.885 20 C -0.175 4.175 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.114 4.114 24 H 0.155 0.845 25 C 0.332 3.668 26 O -0.427 6.427 27 O -0.326 6.326 28 C -0.265 4.265 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.288 0.712 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.625 -19.223 9.156 21.354 hybrid contribution 1.653 1.180 0.127 2.035 sum 3.278 -18.043 9.283 20.554 Atomic orbital electron populations 1.69864 1.08871 1.30189 1.38135 1.26745 0.95638 1.04425 0.91467 0.85180 0.78485 0.75565 0.79973 1.18322 1.19656 1.18470 1.19722 0.95157 0.90970 1.47457 0.90258 1.17734 0.92030 0.92483 0.88473 1.21330 0.99533 0.96433 1.02754 1.20855 0.98846 0.92973 0.99445 1.20649 1.00537 0.98664 1.04758 1.17247 0.96023 0.84935 0.93901 1.42389 1.09529 1.21262 1.58804 1.16042 0.84948 0.79984 0.78698 1.90904 1.16008 1.77167 1.64371 1.45330 1.10441 1.25022 1.58130 1.21664 0.92406 0.88634 0.91228 0.88534 1.22868 1.02357 0.94420 0.97893 1.22446 1.00101 0.96938 0.95397 1.22481 1.01369 0.90160 1.00785 1.22211 0.91695 0.97922 0.99562 0.84528 1.23432 0.92344 0.77582 0.73414 1.90731 1.39997 1.60714 1.51258 1.84589 1.40833 1.40868 1.66316 1.20957 1.05232 0.92204 1.08099 0.90511 0.88005 0.87161 0.87255 0.75063 0.76422 0.91554 0.91141 0.89420 0.89208 0.88039 0.90522 0.71186 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.72 10.95 21.82 0.24 -45.48 16 2 C 0.03 1.53 5.31 85.25 0.45 1.98 16 3 Si 0.99 38.92 29.56 68.60 2.03 40.94 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.50 -27.22 9.04 23.46 0.21 -27.01 16 8 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 9 C 0.10 5.24 5.50 -21.31 -0.12 5.13 16 10 C -0.18 -9.89 8.63 22.75 0.20 -9.69 16 11 C -0.10 -5.13 10.02 22.20 0.22 -4.91 16 12 C -0.22 -10.95 8.70 22.59 0.20 -10.75 16 13 C 0.17 7.91 6.28 38.09 0.24 8.15 16 14 N -0.67 -24.11 5.34 -317.34 -1.69 -25.80 16 15 C 0.70 24.77 8.40 179.06 1.50 26.28 16 16 O -0.61 -26.28 13.38 -3.98 -0.05 -26.34 16 17 N -0.73 -18.50 4.53 -454.02 -2.06 -20.56 16 18 C 0.17 3.44 3.30 45.78 0.15 3.59 16 19 H 0.10 2.34 7.41 -2.39 -0.02 2.32 16 20 C -0.14 -2.46 6.56 31.74 0.21 -2.25 16 21 C -0.11 -1.23 6.90 31.89 0.22 -1.01 16 22 C -0.11 -1.27 6.31 31.67 0.20 -1.07 16 23 C -0.09 -1.40 3.41 -10.82 -0.04 -1.44 16 24 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 25 C 0.49 8.72 5.30 71.24 0.38 9.10 16 26 O -0.54 -11.77 15.95 21.97 0.35 -11.42 16 27 O -0.51 -8.18 13.42 -51.34 -0.69 -8.86 16 28 C -0.24 -11.91 9.71 22.85 0.22 -11.69 16 29 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 30 H 0.10 5.81 6.44 -2.91 -0.02 5.79 16 31 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.11 5.29 6.25 -2.91 -0.02 5.27 16 33 H 0.41 11.71 8.84 -92.70 -0.82 10.89 16 34 H 0.40 8.88 6.51 -92.71 -0.60 8.28 16 35 H 0.07 1.31 8.05 -2.39 -0.02 1.29 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 1.13 6.82 -2.39 -0.02 1.11 16 41 H 0.43 3.55 9.10 -74.06 -0.67 2.88 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -72.25 350.21 1.37 -70.88 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -1.00 Total: 42.25 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 4.25 Total: -15.61 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -3.51 Total: -91.84 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.39 Total: -46.62 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.94 kcal Total: -72.25 1.37 -70.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313485747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.221 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds