Wall clock time and date at job start Tue Mar 31 2020 12:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48510 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47023 * 299.99132 * 3 2 1 6 6 H 1.48498 * 109.47481 * 59.99812 * 3 2 1 7 7 C 1.39932 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 189.39633 * 7 2 1 9 9 C 1.41401 * 120.00193 * 9.40458 * 7 2 1 10 10 C 1.40780 * 120.20921 * 30.00666 * 9 7 2 11 11 C 1.37641 * 119.88578 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31757 * 359.73029 * 11 10 9 13 13 C 1.39240 * 120.42792 * 0.54694 * 12 11 10 14 14 N 1.39956 * 119.94189 * 179.72452 * 13 12 11 15 15 C 1.34773 * 120.00231 * 323.10232 * 14 13 12 16 16 O 1.21586 * 120.00045 * 4.56868 * 15 14 13 17 17 N 1.34784 * 119.99942 * 184.57037 * 15 14 13 18 18 C 1.46504 * 119.99816 * 175.03022 * 17 15 14 19 19 C 1.52998 * 112.84791 * 63.81788 * 18 17 15 20 20 C 1.50701 * 109.47455 * 52.30235 * 19 18 17 21 21 O 1.20817 * 119.99815 * 356.43230 * 20 19 18 22 22 O 1.34228 * 119.99835 * 176.43221 * 20 19 18 23 23 C 1.53777 * 113.68907 * 195.08390 * 18 17 15 24 24 C 1.53774 * 87.08274 * 89.12757 * 23 18 17 25 25 C 1.53777 * 113.61555 * 292.62292 * 18 17 15 26 26 C 1.38272 * 120.10872 * 359.45548 * 13 12 11 27 27 H 0.97001 * 119.99704 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.06206 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.84472 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.78337 * 180.27375 * 12 11 10 31 31 H 0.97000 * 119.99940 * 143.11098 * 14 13 12 32 32 H 0.96996 * 119.99864 * 355.02330 * 17 15 14 33 33 H 1.08999 * 109.47473 * 292.29649 * 19 18 17 34 34 H 1.09002 * 109.47202 * 172.30114 * 19 18 17 35 35 H 0.96707 * 116.99798 * 180.02562 * 22 20 19 36 36 H 1.08997 * 113.61740 * 203.67768 * 23 18 17 37 37 H 1.09005 * 113.61409 * 334.57956 * 23 18 17 38 38 H 1.09004 * 113.61628 * 270.88431 * 24 23 18 39 39 H 1.09004 * 113.61939 * 139.97699 * 24 23 18 40 40 H 1.09000 * 113.61204 * 25.34451 * 25 18 17 41 41 H 1.08998 * 113.61724 * 156.25283 * 25 18 17 42 42 H 1.08000 * 120.16291 * 180.24991 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0771 -1.2180 0.1533 9 6 1.3152 -2.4283 -0.1990 10 6 0.1480 -2.4580 -0.9856 11 6 -0.5213 -3.6457 -1.1750 12 6 -0.0489 -4.8141 -0.5997 13 6 1.1009 -4.7989 0.1853 14 7 1.5659 -5.9842 0.7663 15 6 0.6890 -6.8964 1.2305 16 8 -0.5045 -6.7287 1.0703 17 7 1.1352 -7.9944 1.8722 18 6 0.1812 -8.9307 2.4719 19 6 -0.7199 -9.6056 1.4359 20 6 0.1307 -10.2182 0.3532 21 8 1.3296 -10.0696 0.3702 22 8 -0.4437 -10.9289 -0.6300 23 6 0.8221 -9.9144 3.4651 24 6 0.5573 -8.8633 4.5558 25 6 -0.5871 -8.3454 3.6685 26 6 1.7873 -3.6156 0.3873 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2216 -1.5504 -1.4396 29 1 -1.4164 -3.6677 -1.7789 30 1 -0.5785 -5.7421 -0.7577 31 1 2.5193 -6.1492 0.8350 32 1 2.0879 -8.1647 1.9370 33 1 -1.3880 -8.8643 0.9974 34 1 -1.3092 -10.3848 1.9195 35 1 0.1430 -11.3028 -1.3018 36 1 0.2526 -10.8342 3.5977 37 1 1.8811 -10.0941 3.2798 38 1 1.3710 -8.1486 4.6803 39 1 0.2189 -9.2896 5.5002 40 1 -0.6656 -7.2584 3.6475 41 1 -1.5419 -8.8362 3.8568 42 1 2.6815 -3.6035 0.9928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313486959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:55 Heat of formation + Delta-G solvation = -73.623119 kcal Electronic energy + Delta-G solvation = -26609.138766 eV Core-core repulsion = 22747.767502 eV Total energy + Delta-G solvation = -3861.371264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.05607 -39.76373 -38.70025 -37.01881 -36.12171 -34.28115 -33.29334 -32.55533 -30.68119 -29.75195 -27.90048 -25.94277 -25.16298 -24.35119 -22.02990 -21.30112 -20.88414 -20.08658 -19.15636 -18.11878 -17.96442 -17.47149 -16.61148 -16.04589 -15.66927 -15.53766 -15.25952 -14.76165 -14.67449 -14.41290 -13.99881 -13.77671 -13.23622 -13.07434 -12.82915 -12.65119 -12.46404 -12.18413 -11.80924 -11.61144 -11.55763 -11.16728 -11.12042 -11.06332 -10.97180 -10.86902 -10.63008 -10.54649 -10.36356 -10.11316 -9.49678 -9.40871 -9.22764 -8.87923 -8.83627 -7.36661 -6.84672 -6.60237 -4.32431 2.18478 2.79456 2.86218 2.93071 3.05371 3.11857 3.16747 3.25656 3.70188 3.99799 4.23193 4.41608 4.52552 4.55544 4.72025 4.75391 5.08473 5.21697 5.35189 5.45592 5.50847 5.68559 5.71046 5.72404 5.92702 6.03649 6.10352 6.33168 6.41676 6.62405 6.73597 6.82993 6.94062 7.00317 7.10617 7.30705 7.43636 7.69636 7.82823 7.87869 8.10351 8.14278 8.31822 8.48979 8.69267 8.95123 8.98764 9.09753 10.32265 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002971 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.117010 B = 9420.896922 C = 9955.288272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.121 3.879 10 C -0.160 4.160 11 C -0.101 4.101 12 C -0.217 4.217 13 C 0.165 3.835 14 N -0.680 5.680 15 C 0.703 3.297 16 O -0.573 6.573 17 N -0.719 5.719 18 C 0.189 3.811 19 C -0.120 4.120 20 C 0.483 3.517 21 O -0.510 6.510 22 O -0.521 6.521 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.138 4.138 26 C -0.239 4.239 27 H 0.278 0.722 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.395 0.605 32 H 0.399 0.601 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.407 0.593 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 -18.807 5.268 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.498 4.498 8 H 0.094 0.906 9 C 0.118 3.882 10 C -0.180 4.180 11 C -0.120 4.120 12 C -0.238 4.238 13 C 0.073 3.927 14 N -0.326 5.326 15 C 0.404 3.596 16 O -0.450 6.450 17 N -0.375 5.375 18 C 0.101 3.899 19 C -0.158 4.158 20 C 0.325 3.675 21 O -0.398 6.398 22 O -0.333 6.333 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.176 4.176 26 C -0.261 4.261 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.229 0.771 32 H 0.234 0.766 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.265 0.735 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.463 -18.283 5.479 19.092 hybrid contribution 1.627 0.383 -0.371 1.713 sum 1.164 -17.899 5.108 18.650 Atomic orbital electron populations 1.69812 1.07333 1.28707 1.37306 1.25848 0.94816 1.01047 0.92525 0.86240 0.80701 0.81156 0.78409 1.18609 1.19885 1.20116 1.19508 0.95454 0.90277 1.44563 0.90646 1.17372 0.91439 0.91330 0.88049 1.21411 0.98488 0.96530 1.01540 1.20626 0.98439 0.93164 0.99732 1.20454 0.99980 0.98110 1.05270 1.17237 0.96724 0.83110 0.95607 1.42568 1.08509 1.18888 1.62656 1.15937 0.85646 0.79650 0.78389 1.90891 1.14062 1.77597 1.62465 1.44676 1.09200 1.23382 1.60256 1.20694 0.89799 0.89679 0.89760 1.21841 0.98957 1.01337 0.93714 1.23459 0.87741 0.74764 0.81497 1.90659 1.16645 1.56946 1.75515 1.84554 1.46260 1.64849 1.37670 1.23259 1.01897 0.97199 0.95064 1.22827 0.99167 0.98311 0.97291 1.23280 0.97704 1.02770 0.93880 1.20776 1.04638 0.91896 1.08768 0.91156 0.86236 0.89114 0.87718 0.77118 0.76636 0.85557 0.87285 0.73505 0.88881 0.90538 0.89944 0.91051 0.89977 0.89091 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.38 10.85 55.55 0.60 -20.77 16 2 C 0.07 1.88 5.27 -17.34 -0.09 1.79 16 3 Si 0.91 19.04 29.57 -169.99 -5.03 14.02 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -12.54 9.06 -37.74 -0.34 -12.88 16 8 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 9 C 0.12 3.27 5.54 -106.85 -0.59 2.68 16 10 C -0.16 -4.28 8.65 -38.84 -0.34 -4.61 16 11 C -0.10 -2.50 10.02 -39.69 -0.40 -2.90 16 12 C -0.22 -5.29 8.69 -39.10 -0.34 -5.63 16 13 C 0.17 3.83 6.25 -83.76 -0.52 3.31 16 14 N -0.68 -12.67 5.33 -14.27 -0.08 -12.75 16 15 C 0.70 12.60 7.91 -86.92 -0.69 11.91 16 16 O -0.57 -12.09 11.94 5.29 0.06 -12.02 16 17 N -0.72 -9.61 3.59 -51.66 -0.19 -9.80 16 18 C 0.19 2.11 0.26 -131.01 -0.03 2.08 16 19 C -0.12 -1.31 5.02 -27.88 -0.14 -1.45 16 20 C 0.48 5.75 8.16 36.01 0.29 6.04 16 21 O -0.51 -7.03 15.50 -18.74 -0.29 -7.32 16 22 O -0.52 -5.14 13.42 -39.25 -0.53 -5.66 16 23 C -0.14 -1.13 7.22 -25.92 -0.19 -1.32 16 24 C -0.14 -1.20 7.99 -25.92 -0.21 -1.41 16 25 C -0.14 -1.49 7.06 -25.92 -0.18 -1.67 16 26 C -0.24 -5.89 9.71 -38.69 -0.38 -6.26 16 27 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 28 H 0.12 3.29 6.26 -52.48 -0.33 2.96 16 29 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.10 2.54 6.34 -52.48 -0.33 2.21 16 31 H 0.40 6.05 8.84 -40.82 -0.36 5.69 16 32 H 0.40 4.66 8.58 -40.82 -0.35 4.31 16 33 H 0.13 1.70 6.79 -51.93 -0.35 1.35 16 34 H 0.11 0.83 8.02 -51.93 -0.42 0.42 16 35 H 0.41 2.37 9.10 45.56 0.41 2.78 16 36 H 0.09 0.61 8.01 -51.93 -0.42 0.19 16 37 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 41 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -32.97 352.74 -8.89 -41.86 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -4.62 Total: 17.45 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.14 Total: -10.32 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.34 Total: -43.32 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.75 Total: -25.00 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.97 -8.89 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.764 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds