Wall clock time and date at job start Tue Mar 31 2020 12:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48510 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47023 * 299.99132 * 3 2 1 6 6 H 1.48498 * 109.47481 * 59.99812 * 3 2 1 7 7 C 1.39932 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99575 * 189.39633 * 7 2 1 9 9 C 1.41401 * 120.00193 * 9.40458 * 7 2 1 10 10 C 1.40780 * 120.20921 * 30.00666 * 9 7 2 11 11 C 1.37641 * 119.88578 * 180.02562 * 10 9 7 12 12 C 1.38542 * 120.31757 * 359.73029 * 11 10 9 13 13 C 1.39240 * 120.42792 * 0.54694 * 12 11 10 14 14 N 1.39956 * 119.94189 * 179.72452 * 13 12 11 15 15 C 1.34773 * 120.00231 * 323.10232 * 14 13 12 16 16 O 1.21586 * 120.00045 * 4.56868 * 15 14 13 17 17 N 1.34784 * 119.99942 * 184.57037 * 15 14 13 18 18 C 1.46504 * 119.99816 * 175.03022 * 17 15 14 19 19 C 1.52998 * 112.84791 * 63.81788 * 18 17 15 20 20 C 1.50701 * 109.47455 * 52.30235 * 19 18 17 21 21 O 1.20817 * 119.99815 * 356.43230 * 20 19 18 22 22 O 1.34228 * 119.99835 * 176.43221 * 20 19 18 23 23 C 1.53777 * 113.68907 * 195.08390 * 18 17 15 24 24 C 1.53774 * 87.08274 * 89.12757 * 23 18 17 25 25 C 1.53777 * 113.61555 * 292.62292 * 18 17 15 26 26 C 1.38272 * 120.10872 * 359.45548 * 13 12 11 27 27 H 0.97001 * 119.99704 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.06206 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.84472 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.78337 * 180.27375 * 12 11 10 31 31 H 0.97000 * 119.99940 * 143.11098 * 14 13 12 32 32 H 0.96996 * 119.99864 * 355.02330 * 17 15 14 33 33 H 1.08999 * 109.47473 * 292.29649 * 19 18 17 34 34 H 1.09002 * 109.47202 * 172.30114 * 19 18 17 35 35 H 0.96707 * 116.99798 * 180.02562 * 22 20 19 36 36 H 1.08997 * 113.61740 * 203.67768 * 23 18 17 37 37 H 1.09005 * 113.61409 * 334.57956 * 23 18 17 38 38 H 1.09004 * 113.61628 * 270.88431 * 24 23 18 39 39 H 1.09004 * 113.61939 * 139.97699 * 24 23 18 40 40 H 1.09000 * 113.61204 * 25.34451 * 25 18 17 41 41 H 1.08998 * 113.61724 * 156.25283 * 25 18 17 42 42 H 1.08000 * 120.16291 * 180.24991 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0771 -1.2180 0.1533 9 6 1.3152 -2.4283 -0.1990 10 6 0.1480 -2.4580 -0.9856 11 6 -0.5213 -3.6457 -1.1750 12 6 -0.0489 -4.8141 -0.5997 13 6 1.1009 -4.7989 0.1853 14 7 1.5659 -5.9842 0.7663 15 6 0.6890 -6.8964 1.2305 16 8 -0.5045 -6.7287 1.0703 17 7 1.1352 -7.9944 1.8722 18 6 0.1812 -8.9307 2.4719 19 6 -0.7199 -9.6056 1.4359 20 6 0.1307 -10.2182 0.3532 21 8 1.3296 -10.0696 0.3702 22 8 -0.4437 -10.9289 -0.6300 23 6 0.8221 -9.9144 3.4651 24 6 0.5573 -8.8633 4.5558 25 6 -0.5871 -8.3454 3.6685 26 6 1.7873 -3.6156 0.3873 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2216 -1.5504 -1.4396 29 1 -1.4164 -3.6677 -1.7789 30 1 -0.5785 -5.7421 -0.7577 31 1 2.5193 -6.1492 0.8350 32 1 2.0879 -8.1647 1.9370 33 1 -1.3880 -8.8643 0.9974 34 1 -1.3092 -10.3848 1.9195 35 1 0.1430 -11.3028 -1.3018 36 1 0.2526 -10.8342 3.5977 37 1 1.8811 -10.0941 3.2798 38 1 1.3710 -8.1486 4.6803 39 1 0.2189 -9.2896 5.5002 40 1 -0.6656 -7.2584 3.6475 41 1 -1.5419 -8.8362 3.8568 42 1 2.6815 -3.6035 0.9928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313486959.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:54 Heat of formation + Delta-G solvation = -95.318081 kcal Electronic energy + Delta-G solvation = -26610.079530 eV Core-core repulsion = 22747.767502 eV Total energy + Delta-G solvation = -3862.312028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10609 -40.93425 -39.90649 -38.71105 -36.98968 -36.03639 -34.95226 -33.92563 -31.73568 -31.61002 -29.68199 -27.15490 -26.69840 -25.28015 -23.50889 -22.80086 -22.17947 -21.70635 -20.21621 -19.40415 -19.25254 -18.97582 -17.59462 -17.34627 -16.97980 -16.77020 -16.68013 -16.32407 -16.04853 -15.68707 -15.54672 -14.93438 -14.70734 -14.52276 -14.12657 -14.05917 -13.53355 -13.50313 -13.21516 -12.95950 -12.87667 -12.78229 -12.62354 -12.44878 -12.26605 -11.92101 -11.82602 -11.78441 -11.53832 -11.41032 -11.33757 -11.13517 -10.95885 -10.63226 -10.00375 -9.35956 -8.72325 -8.51944 -6.36440 0.96983 0.98133 1.27986 1.40655 1.51949 1.55822 1.68014 2.18698 2.21285 2.24579 2.81170 3.24208 3.47083 3.63886 3.71816 3.74357 3.94733 4.30369 4.41390 4.44336 4.55443 4.70073 4.72710 4.81276 4.89201 5.02244 5.05036 5.08548 5.12037 5.14699 5.15314 5.23299 5.33737 5.36482 5.64492 5.71997 5.77614 5.80918 6.06262 6.11467 6.19376 6.40005 6.70368 6.95923 6.99758 7.03237 7.11894 7.62829 8.41787 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002971 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.117010 B = 9420.896922 C = 9955.288272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.030 3.970 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.095 3.905 10 C -0.186 4.186 11 C -0.102 4.102 12 C -0.227 4.227 13 C 0.178 3.822 14 N -0.677 5.677 15 C 0.700 3.300 16 O -0.607 6.607 17 N -0.701 5.701 18 C 0.170 3.830 19 C -0.120 4.120 20 C 0.482 3.518 21 O -0.534 6.534 22 O -0.520 6.520 23 C -0.118 4.118 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.249 4.249 27 H 0.285 0.715 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.412 0.588 32 H 0.409 0.591 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.424 0.576 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.112 0.888 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.531 -20.393 6.410 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.529 4.529 8 H 0.097 0.903 9 C 0.092 3.908 10 C -0.206 4.206 11 C -0.121 4.121 12 C -0.249 4.249 13 C 0.084 3.916 14 N -0.324 5.324 15 C 0.401 3.599 16 O -0.486 6.486 17 N -0.356 5.356 18 C 0.082 3.918 19 C -0.158 4.158 20 C 0.326 3.674 21 O -0.423 6.423 22 O -0.334 6.334 23 C -0.156 4.156 24 C -0.168 4.168 25 C -0.180 4.180 26 C -0.271 4.271 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.248 0.752 32 H 0.245 0.755 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.285 0.715 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.130 0.870 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.341 -19.949 6.632 21.025 hybrid contribution 1.317 0.726 -0.723 1.669 sum 1.658 -19.223 5.909 20.178 Atomic orbital electron populations 1.69889 1.08946 1.30159 1.37445 1.26776 0.95611 1.04530 0.91368 0.85079 0.79294 0.76059 0.78728 1.17965 1.19037 1.19344 1.19804 0.95815 0.91235 1.46034 0.90324 1.17744 0.91969 0.92550 0.88546 1.21335 0.99573 0.96598 1.03085 1.20837 0.98798 0.92825 0.99592 1.20567 1.00651 0.97863 1.05804 1.17228 0.95739 0.84321 0.94329 1.42420 1.09650 1.17838 1.62535 1.16097 0.85005 0.80347 0.78481 1.90869 1.15502 1.78492 1.63716 1.44586 1.10291 1.22080 1.58665 1.21136 0.90152 0.90203 0.90281 1.21875 0.98650 1.01622 0.93672 1.23618 0.87462 0.74530 0.81808 1.90646 1.17555 1.57985 1.76138 1.84517 1.46672 1.64418 1.37765 1.23252 1.02246 0.97330 0.92725 1.22794 0.97748 0.98078 0.98205 1.23341 0.99654 1.00372 0.94654 1.20920 1.05358 0.91814 1.09036 0.90411 0.87764 0.87346 0.87682 0.75178 0.75488 0.88288 0.83555 0.71524 0.86085 0.90275 0.90980 0.88846 0.94012 0.86969 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.42 10.85 21.82 0.24 -45.18 16 2 C 0.03 1.56 5.27 85.25 0.45 2.01 16 3 Si 0.99 39.04 29.57 68.60 2.03 41.07 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.50 -27.32 9.06 23.46 0.21 -27.11 16 8 H 0.08 4.10 7.86 -2.91 -0.02 4.08 16 9 C 0.09 5.27 5.54 -21.31 -0.12 5.16 16 10 C -0.19 -10.32 8.65 22.75 0.20 -10.12 16 11 C -0.10 -5.19 10.02 22.20 0.22 -4.97 16 12 C -0.23 -11.30 8.69 22.58 0.20 -11.10 16 13 C 0.18 8.34 6.25 38.09 0.24 8.58 16 14 N -0.68 -25.10 5.33 -317.33 -1.69 -26.79 16 15 C 0.70 25.05 7.91 179.05 1.42 26.46 16 16 O -0.61 -25.97 11.94 -3.99 -0.05 -26.02 16 17 N -0.70 -18.08 3.59 -435.60 -1.56 -19.64 16 18 C 0.17 3.50 0.26 4.13 0.00 3.50 16 19 C -0.12 -2.42 5.02 29.85 0.15 -2.27 16 20 C 0.48 10.64 8.16 71.24 0.58 11.22 16 21 O -0.53 -13.81 15.50 21.99 0.34 -13.47 16 22 O -0.52 -9.27 13.42 -51.40 -0.69 -9.96 16 23 C -0.12 -1.57 7.22 31.12 0.22 -1.34 16 24 C -0.13 -1.93 7.99 31.12 0.25 -1.68 16 25 C -0.14 -2.87 7.06 31.12 0.22 -2.65 16 26 C -0.25 -12.50 9.71 22.85 0.22 -12.28 16 27 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 28 H 0.10 6.00 6.26 -2.91 -0.02 5.99 16 29 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 30 H 0.11 5.19 6.34 -2.91 -0.02 5.17 16 31 H 0.41 12.30 8.84 -92.71 -0.82 11.49 16 32 H 0.41 8.96 8.58 -92.71 -0.80 8.17 16 33 H 0.10 2.64 6.79 -2.39 -0.02 2.62 16 34 H 0.15 1.76 8.02 -2.39 -0.02 1.74 16 35 H 0.42 4.14 9.10 -74.05 -0.67 3.47 16 36 H 0.12 1.00 8.01 -2.39 -0.02 0.98 16 37 H 0.08 1.07 8.09 -2.38 -0.02 1.05 16 38 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.04 1.19 7.68 -2.39 -0.02 1.17 16 41 H 0.11 1.74 8.10 -2.39 -0.02 1.72 16 42 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -73.48 352.74 1.88 -71.61 By element: Atomic # 1 Polarization: 46.18 SS G_CDS: -1.19 Total: 44.98 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.46 Total: -16.59 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.02 Total: -91.62 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.40 Total: -49.45 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -73.48 1.88 -71.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486959.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.712 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds