Wall clock time and date at job start Tue Mar 31 2020 13:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38792 * 120.12250 * 2 1 4 4 N 1.39577 * 120.01365 * 0.02562 * 3 2 1 5 5 C 1.34771 * 120.00507 * 215.05550 * 4 3 2 6 6 O 1.21748 * 119.99856 * 355.49694 * 5 4 3 7 7 C 1.46170 * 120.00170 * 175.49901 * 5 4 3 8 8 H 1.08002 * 119.99818 * 359.97438 * 7 5 4 9 9 C 1.40122 * 120.00038 * 180.02562 * 7 5 4 10 10 N 1.30635 * 120.00371 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00042 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46936 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47425 * 119.99573 * 11 9 7 14 14 H 1.48505 * 109.46806 * 239.99630 * 11 9 7 15 15 C 1.39097 * 119.97948 * 180.29779 * 3 2 1 16 16 C 1.38206 * 120.20658 * 359.72162 * 15 3 2 17 17 C 1.38023 * 120.23749 * 0.02562 * 16 15 3 18 18 C 1.39409 * 120.11458 * 179.76445 * 2 1 3 19 19 C 1.47864 * 120.10608 * 0.02562 * 18 2 1 20 20 O 1.21547 * 120.00274 * 54.16148 * 19 18 2 21 21 N 1.34781 * 119.99766 * 234.43895 * 19 18 2 22 22 C 1.47154 * 120.98054 * 4.97466 * 21 19 18 23 23 C 1.53721 * 108.15978 * 129.42767 * 22 21 19 24 24 O 1.42961 * 109.14659 * 52.53932 * 23 22 21 25 25 C 1.42967 * 114.16625 * 297.28865 * 24 23 22 26 26 C 1.47152 * 120.98254 * 185.24985 * 21 19 18 27 27 H 1.08998 * 109.46734 * 275.12736 * 1 2 3 28 28 H 1.08998 * 109.46629 * 35.12283 * 1 2 3 29 29 H 1.08998 * 109.46901 * 155.12638 * 1 2 3 30 30 H 0.97000 * 119.99574 * 35.05262 * 4 3 2 31 31 H 0.97000 * 120.00636 * 180.02562 * 10 9 7 32 32 H 1.07997 * 119.89756 * 179.69385 * 15 3 2 33 33 H 1.07994 * 119.88113 * 180.02562 * 16 15 3 34 34 H 1.08003 * 119.98942 * 179.97438 * 17 16 15 35 35 H 1.08990 * 109.68127 * 249.20616 * 22 21 19 36 36 H 1.09002 * 109.68187 * 9.76324 * 22 21 19 37 37 H 1.08998 * 109.65998 * 292.57186 * 23 22 21 38 38 H 1.09006 * 109.48090 * 172.39626 * 23 22 21 39 39 H 1.09003 * 109.50638 * 302.65434 * 25 24 23 40 40 H 1.08997 * 109.55506 * 182.53488 * 25 24 23 41 41 H 1.08998 * 109.68085 * 350.24107 * 26 21 19 42 42 H 1.08997 * 109.68033 * 110.75742 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2036 1.2005 0.0000 4 7 1.5085 2.4109 0.0005 5 6 2.0012 3.4713 -0.6698 6 8 3.0913 3.3988 -1.2071 7 6 1.2269 4.7083 -0.7516 8 1 0.2597 4.7724 -0.2752 9 6 1.7389 5.8105 -1.4489 10 7 2.9085 5.7328 -2.0256 11 14 0.7496 7.3917 -1.5529 12 1 -0.5316 7.2229 -0.8213 13 1 1.5252 8.5019 -0.9439 14 1 0.4685 7.7069 -2.9766 15 6 3.5945 1.1970 -0.0063 16 6 4.2869 0.0009 -0.0067 17 6 3.6031 -1.1980 -0.0014 18 6 2.2065 -1.2059 0.0050 19 6 1.4721 -2.4893 0.0097 20 8 0.6357 -2.7140 -0.8431 21 7 1.7263 -3.4076 0.9629 22 6 2.6494 -3.1140 2.0706 23 6 1.9440 -3.4697 3.3893 24 8 1.4524 -4.8099 3.3114 25 6 0.4680 -5.0141 2.2949 26 6 1.0934 -4.7355 0.9234 27 1 -0.3633 0.0918 1.0236 28 1 -0.3632 0.8406 -0.5913 29 1 -0.3633 -0.9323 -0.4323 30 1 0.6709 2.4889 0.4834 31 1 3.2631 6.4960 -2.5080 32 1 4.1351 2.1319 -0.0113 33 1 5.3668 0.0043 -0.0111 34 1 4.1482 -2.1304 -0.0022 35 1 3.5544 -3.7116 1.9624 36 1 2.9055 -2.0545 2.0641 37 1 1.1118 -2.7858 3.5560 38 1 2.6524 -3.3891 4.2138 39 1 -0.3695 -4.3358 2.4578 40 1 0.1143 -6.0445 2.3313 41 1 0.3187 -4.7503 0.1569 42 1 1.8444 -5.4936 0.7010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330869653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:55 Heat of formation + Delta-G solvation = -83.924754 kcal Electronic energy + Delta-G solvation = -26722.303872 eV Core-core repulsion = 22860.485896 eV Total energy + Delta-G solvation = -3861.817976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.71107 -39.34525 -38.28402 -36.83146 -34.95589 -33.68315 -32.68278 -32.12034 -31.55858 -29.61819 -28.02480 -26.83777 -25.99780 -24.49622 -23.61658 -22.06144 -21.15992 -20.13556 -19.15609 -17.75783 -17.38508 -16.77324 -16.23003 -15.86334 -15.72656 -15.48400 -15.34382 -15.14412 -14.98223 -14.40209 -14.14830 -13.83589 -13.41811 -13.16921 -13.00031 -12.70978 -12.68116 -12.45565 -12.17232 -11.97773 -11.69866 -11.51646 -11.40229 -11.25107 -11.16106 -10.98840 -10.89473 -10.69676 -10.41502 -10.34724 -9.83640 -9.33742 -8.94662 -8.76163 -8.37659 -7.78575 -7.21273 -6.40116 -4.87560 1.42421 1.80036 2.63678 2.83966 3.03063 3.11756 3.16022 3.50036 3.94275 4.07452 4.34585 4.44002 4.46849 4.60242 4.71422 4.77560 4.93901 4.99530 5.19823 5.21665 5.29625 5.31325 5.45095 5.48151 5.53193 5.58337 5.62168 5.79360 5.88850 6.06981 6.09236 6.16745 6.30294 6.51924 6.66965 6.75597 6.91088 6.95257 7.14784 7.23123 7.28460 7.64874 7.96464 8.08865 8.10050 8.80012 9.13828 10.31523 10.50614 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.002932 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.755922 B = 9546.387785 C = 9846.222036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.092 4.092 3 C 0.188 3.812 4 N -0.696 5.696 5 C 0.543 3.457 6 O -0.560 6.560 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.086 3.914 10 N -0.758 5.758 11 Si 0.913 3.087 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.274 1.274 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.120 4.120 19 C 0.576 3.424 20 O -0.532 6.532 21 N -0.615 5.615 22 C 0.071 3.929 23 C 0.047 3.953 24 O -0.382 6.382 25 C 0.049 3.951 26 C 0.076 3.924 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.394 0.606 31 H 0.272 0.728 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -16.670 10.406 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 C 0.089 3.911 4 N -0.339 5.339 5 C 0.350 3.650 6 O -0.442 6.442 7 C -0.573 4.573 8 H 0.091 0.909 9 C -0.135 4.135 10 N -0.386 5.386 11 Si 0.737 3.263 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.200 1.200 15 C -0.126 4.126 16 C -0.129 4.129 17 C -0.151 4.151 18 C -0.124 4.124 19 C 0.366 3.634 20 O -0.409 6.409 21 N -0.350 5.350 22 C -0.052 4.052 23 C -0.031 4.031 24 O -0.300 6.300 25 C -0.029 4.029 26 C -0.046 4.046 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.441 -16.768 9.520 19.335 hybrid contribution -0.824 1.006 -0.117 1.306 sum -2.265 -15.762 9.402 18.492 Atomic orbital electron populations 1.20875 0.91148 1.04484 1.01653 1.19587 0.95885 0.90651 1.03483 1.17710 0.91512 0.85937 0.95982 1.44137 1.25950 1.09580 1.54266 1.18412 0.86543 0.82231 0.77815 1.90615 1.22104 1.82220 1.49238 1.20875 1.04924 0.95689 1.35778 0.90907 1.25746 0.94601 0.99842 0.93310 1.69984 1.15199 1.30167 1.23239 0.86221 0.80343 0.81035 0.78689 1.18611 1.19961 1.19969 1.21727 0.93191 0.99502 0.98193 1.20912 0.99609 0.91752 1.00673 1.20881 0.92049 0.98107 1.04071 1.19174 0.93686 0.91471 1.08019 1.18559 0.81393 0.83250 0.80205 1.90727 1.33568 1.78747 1.37852 1.48083 1.46540 1.14323 1.26098 1.22639 0.92660 1.03861 0.86008 1.23097 0.98745 0.84013 0.97199 1.87951 1.58339 1.28702 1.54995 1.22978 0.90669 1.02527 0.86713 1.22276 0.99202 0.84079 0.99065 0.92082 0.90953 0.89984 0.77240 0.91724 0.83374 0.85957 0.86622 0.90451 0.87633 0.92405 0.87491 0.92532 0.87667 0.87998 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.03 36.01 0.33 -1.69 16 2 C -0.09 -1.64 5.93 -103.98 -0.62 -2.26 16 3 C 0.19 3.82 6.28 -83.81 -0.53 3.29 16 4 N -0.70 -15.18 4.76 -11.23 -0.05 -15.23 16 5 C 0.54 14.62 7.58 -13.08 -0.10 14.52 16 6 O -0.56 -16.89 12.42 5.15 0.06 -16.83 16 7 C -0.54 -14.33 9.53 -35.69 -0.34 -14.67 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 10 N -0.76 -21.58 11.82 55.55 0.66 -20.92 16 11 Si 0.91 19.19 29.56 -169.99 -5.02 14.17 16 12 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 13 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 C -0.11 -2.11 8.69 -39.27 -0.34 -2.45 16 16 C -0.11 -1.78 10.02 -39.67 -0.40 -2.18 16 17 C -0.13 -1.94 7.87 -39.13 -0.31 -2.24 16 18 C -0.12 -1.95 4.58 -104.99 -0.48 -2.43 16 19 C 0.58 8.87 6.54 -12.32 -0.08 8.78 16 20 O -0.53 -9.72 14.54 5.32 0.08 -9.64 16 21 N -0.62 -7.29 3.01 -173.13 -0.52 -7.81 16 22 C 0.07 0.67 5.78 -3.31 -0.02 0.65 16 23 C 0.05 0.39 7.00 37.53 0.26 0.66 16 24 O -0.38 -3.69 10.74 -35.23 -0.38 -4.07 16 25 C 0.05 0.41 6.98 37.31 0.26 0.67 16 26 C 0.08 0.75 6.65 -3.54 -0.02 0.73 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.21 7.45 -51.93 -0.39 0.82 16 29 H 0.08 1.39 5.53 -51.93 -0.29 1.10 16 30 H 0.39 7.43 7.94 -40.82 -0.32 7.11 16 31 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 32 H 0.15 3.40 6.18 -52.49 -0.32 3.07 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.12 1.41 7.79 -52.48 -0.41 1.00 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.05 5.60 -51.93 -0.29 0.76 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.08 7.06 -51.93 -0.37 0.72 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -33.96 344.90 -7.78 -41.74 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.32 Total: 9.83 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.48 Total: 3.57 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.08 Total: -43.96 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.24 Total: -30.54 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.96 -7.78 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330869653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.183 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds