Wall clock time and date at job start Tue Mar 31 2020 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38792 * 120.12250 * 2 1 4 4 N 1.39577 * 120.01365 * 0.02562 * 3 2 1 5 5 C 1.34771 * 120.00507 * 215.05550 * 4 3 2 6 6 O 1.21748 * 119.99856 * 355.49694 * 5 4 3 7 7 C 1.46170 * 120.00170 * 175.49901 * 5 4 3 8 8 H 1.08002 * 119.99818 * 359.97438 * 7 5 4 9 9 C 1.40122 * 120.00038 * 180.02562 * 7 5 4 10 10 N 1.30635 * 120.00371 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 120.00042 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46936 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47425 * 119.99573 * 11 9 7 14 14 H 1.48505 * 109.46806 * 239.99630 * 11 9 7 15 15 C 1.39097 * 119.97948 * 180.29779 * 3 2 1 16 16 C 1.38206 * 120.20658 * 359.72162 * 15 3 2 17 17 C 1.38023 * 120.23749 * 0.02562 * 16 15 3 18 18 C 1.39409 * 120.11458 * 179.76445 * 2 1 3 19 19 C 1.47864 * 120.10608 * 0.02562 * 18 2 1 20 20 O 1.21547 * 120.00274 * 54.16148 * 19 18 2 21 21 N 1.34781 * 119.99766 * 234.43895 * 19 18 2 22 22 C 1.47154 * 120.98054 * 4.97466 * 21 19 18 23 23 C 1.53721 * 108.15978 * 129.42767 * 22 21 19 24 24 O 1.42961 * 109.14659 * 52.53932 * 23 22 21 25 25 C 1.42967 * 114.16625 * 297.28865 * 24 23 22 26 26 C 1.47152 * 120.98254 * 185.24985 * 21 19 18 27 27 H 1.08998 * 109.46734 * 275.12736 * 1 2 3 28 28 H 1.08998 * 109.46629 * 35.12283 * 1 2 3 29 29 H 1.08998 * 109.46901 * 155.12638 * 1 2 3 30 30 H 0.97000 * 119.99574 * 35.05262 * 4 3 2 31 31 H 0.97000 * 120.00636 * 180.02562 * 10 9 7 32 32 H 1.07997 * 119.89756 * 179.69385 * 15 3 2 33 33 H 1.07994 * 119.88113 * 180.02562 * 16 15 3 34 34 H 1.08003 * 119.98942 * 179.97438 * 17 16 15 35 35 H 1.08990 * 109.68127 * 249.20616 * 22 21 19 36 36 H 1.09002 * 109.68187 * 9.76324 * 22 21 19 37 37 H 1.08998 * 109.65998 * 292.57186 * 23 22 21 38 38 H 1.09006 * 109.48090 * 172.39626 * 23 22 21 39 39 H 1.09003 * 109.50638 * 302.65434 * 25 24 23 40 40 H 1.08997 * 109.55506 * 182.53488 * 25 24 23 41 41 H 1.08998 * 109.68085 * 350.24107 * 26 21 19 42 42 H 1.08997 * 109.68033 * 110.75742 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2036 1.2005 0.0000 4 7 1.5085 2.4109 0.0005 5 6 2.0012 3.4713 -0.6698 6 8 3.0913 3.3988 -1.2071 7 6 1.2269 4.7083 -0.7516 8 1 0.2597 4.7724 -0.2752 9 6 1.7389 5.8105 -1.4489 10 7 2.9085 5.7328 -2.0256 11 14 0.7496 7.3917 -1.5529 12 1 -0.5316 7.2229 -0.8213 13 1 1.5252 8.5019 -0.9439 14 1 0.4685 7.7069 -2.9766 15 6 3.5945 1.1970 -0.0063 16 6 4.2869 0.0009 -0.0067 17 6 3.6031 -1.1980 -0.0014 18 6 2.2065 -1.2059 0.0050 19 6 1.4721 -2.4893 0.0097 20 8 0.6357 -2.7140 -0.8431 21 7 1.7263 -3.4076 0.9629 22 6 2.6494 -3.1140 2.0706 23 6 1.9440 -3.4697 3.3893 24 8 1.4524 -4.8099 3.3114 25 6 0.4680 -5.0141 2.2949 26 6 1.0934 -4.7355 0.9234 27 1 -0.3633 0.0918 1.0236 28 1 -0.3632 0.8406 -0.5913 29 1 -0.3633 -0.9323 -0.4323 30 1 0.6709 2.4889 0.4834 31 1 3.2631 6.4960 -2.5080 32 1 4.1351 2.1319 -0.0113 33 1 5.3668 0.0043 -0.0111 34 1 4.1482 -2.1304 -0.0022 35 1 3.5544 -3.7116 1.9624 36 1 2.9055 -2.0545 2.0641 37 1 1.1118 -2.7858 3.5560 38 1 2.6524 -3.3891 4.2138 39 1 -0.3695 -4.3358 2.4578 40 1 0.1143 -6.0445 2.3313 41 1 0.3187 -4.7503 0.1569 42 1 1.8444 -5.4936 0.7010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330869653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:54 Heat of formation + Delta-G solvation = -107.769165 kcal Electronic energy + Delta-G solvation = -26723.337843 eV Core-core repulsion = 22860.485896 eV Total energy + Delta-G solvation = -3862.851947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.86224 -40.68759 -39.42588 -38.48669 -35.97715 -35.34613 -34.62498 -33.47391 -32.48272 -31.04798 -29.12050 -28.37810 -27.60638 -25.33885 -24.79333 -23.38086 -22.42466 -21.68291 -20.32841 -19.52485 -18.69696 -17.76286 -17.63557 -17.14599 -16.96355 -16.71745 -16.44027 -16.26830 -16.01111 -15.89390 -15.46659 -15.07594 -14.80333 -14.57261 -14.41920 -14.25988 -14.11483 -13.50212 -13.34007 -13.24085 -13.03007 -12.86510 -12.80160 -12.72216 -12.60194 -12.33968 -12.29113 -12.00575 -11.72034 -11.23210 -11.21437 -10.99518 -10.74545 -9.96318 -9.70471 -9.61235 -8.84147 -8.38397 -6.96089 0.04924 0.39616 1.38238 1.39338 1.48799 1.57174 1.78801 2.19783 2.34568 2.74343 2.85738 2.90831 3.37609 3.55065 3.73777 3.86576 3.95392 4.04666 4.11099 4.15544 4.22893 4.26376 4.47677 4.50053 4.62974 4.65762 4.66213 4.74024 4.75898 4.78138 4.85410 4.92586 5.16875 5.24300 5.31945 5.36985 5.46472 5.49925 5.73165 5.81478 6.09325 6.12325 6.15869 6.32537 6.76693 6.94849 7.29034 8.32347 8.54823 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.002932 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.755922 B = 9546.387785 C = 9846.222036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C 0.156 3.844 4 N -0.689 5.689 5 C 0.531 3.469 6 O -0.604 6.604 7 C -0.564 4.564 8 H 0.091 0.909 9 C 0.031 3.969 10 N -0.811 5.811 11 Si 1.000 3.000 12 H -0.247 1.247 13 H -0.266 1.266 14 H -0.270 1.270 15 C -0.129 4.129 16 C -0.102 4.102 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.576 3.424 20 O -0.568 6.568 21 N -0.607 5.607 22 C 0.067 3.933 23 C 0.047 3.953 24 O -0.391 6.391 25 C 0.052 3.948 26 C 0.073 3.927 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.405 0.595 31 H 0.278 0.722 32 H 0.110 0.890 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.131 0.869 39 H 0.051 0.949 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -18.394 11.822 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.098 4.098 3 C 0.058 3.942 4 N -0.333 5.333 5 C 0.338 3.662 6 O -0.489 6.489 7 C -0.600 4.600 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.440 5.440 11 Si 0.819 3.181 12 H -0.169 1.169 13 H -0.191 1.191 14 H -0.195 1.195 15 C -0.151 4.151 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.125 4.125 19 C 0.365 3.635 20 O -0.448 6.448 21 N -0.340 5.340 22 C -0.055 4.055 23 C -0.030 4.030 24 O -0.309 6.309 25 C -0.025 4.025 26 C -0.049 4.049 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.149 0.851 39 H 0.069 0.931 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.975 -18.566 11.006 21.673 hybrid contribution -0.597 1.325 -0.479 1.530 sum -2.572 -17.241 10.527 20.363 Atomic orbital electron populations 1.20834 0.90140 1.03604 1.02924 1.19733 0.96753 0.90376 1.02944 1.17879 0.91814 0.85983 0.98496 1.43653 1.26334 1.09404 1.53958 1.18722 0.86152 0.83563 0.77803 1.90576 1.23788 1.83421 1.51157 1.21408 1.05815 0.96310 1.36464 0.89049 1.26973 0.95576 1.03903 0.92130 1.70136 1.17538 1.31835 1.24489 0.84930 0.78870 0.75392 0.78908 1.16947 1.19101 1.19484 1.21573 0.93381 0.99636 1.00463 1.21153 1.01012 0.90662 0.99260 1.21233 0.91525 0.98937 1.01021 1.19433 0.94525 0.91548 1.07012 1.18366 0.81092 0.83375 0.80669 1.90717 1.35063 1.79413 1.39600 1.48150 1.46156 1.14314 1.25378 1.22860 0.93061 1.03992 0.85593 1.23193 0.99035 0.83480 0.97266 1.87951 1.58539 1.29201 1.55211 1.23054 0.90080 1.03965 0.85427 1.22471 0.99446 0.83137 0.99823 0.89648 0.92042 0.90520 0.75902 0.91209 0.87158 0.83069 0.82846 0.88334 0.88188 0.92967 0.85099 0.93077 0.85122 0.89083 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 9.03 71.24 0.64 -3.17 16 2 C -0.09 -3.37 5.93 -19.45 -0.12 -3.49 16 3 C 0.16 6.54 6.28 38.25 0.24 6.78 16 4 N -0.69 -31.39 4.76 -307.63 -1.46 -32.85 16 5 C 0.53 30.01 7.58 86.30 0.65 30.66 16 6 O -0.60 -38.69 12.42 -4.50 -0.06 -38.75 16 7 C -0.56 -30.95 9.53 24.79 0.24 -30.71 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.03 1.66 5.50 85.33 0.47 2.12 16 10 N -0.81 -47.98 11.82 21.85 0.26 -47.72 16 11 Si 1.00 39.61 29.56 68.60 2.03 41.64 16 12 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 13 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 14 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 15 C -0.13 -5.39 8.69 22.47 0.20 -5.20 16 16 C -0.10 -3.20 10.02 22.21 0.22 -2.98 16 17 C -0.11 -2.92 7.87 22.56 0.18 -2.74 16 18 C -0.12 -3.78 4.58 -20.10 -0.09 -3.88 16 19 C 0.58 16.79 6.54 86.79 0.57 17.36 16 20 O -0.57 -20.36 14.54 -3.86 -0.06 -20.41 16 21 N -0.61 -12.83 3.01 -819.93 -2.47 -15.30 16 22 C 0.07 1.04 5.78 86.50 0.50 1.54 16 23 C 0.05 0.65 7.00 72.22 0.51 1.15 16 24 O -0.39 -6.29 10.74 -148.98 -1.60 -7.89 16 25 C 0.05 0.72 6.98 72.08 0.50 1.22 16 26 C 0.07 1.25 6.65 86.35 0.57 1.82 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 2.09 7.45 -2.39 -0.02 2.07 16 29 H 0.08 2.58 5.53 -2.39 -0.01 2.57 16 30 H 0.41 15.83 7.94 -92.71 -0.74 15.10 16 31 H 0.28 14.82 8.29 -92.71 -0.77 14.05 16 32 H 0.11 5.46 6.18 -2.91 -0.02 5.44 16 33 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.15 3.05 7.79 -2.91 -0.02 3.03 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.70 5.60 -2.39 -0.01 1.68 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.80 7.06 -2.39 -0.02 1.78 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -78.02 344.90 2.25 -75.77 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.33 Total: 35.01 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.28 Total: 10.50 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.68 Total: -95.87 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -1.71 Total: -67.05 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -78.02 2.25 -75.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330869653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.002 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds