Wall clock time and date at job start Tue Mar 31 2020 12:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47118 * 239.99713 * 3 2 1 5 5 H 1.48497 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 119.99773 * 3 2 1 7 7 C 1.40051 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99681 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00516 * 354.93261 * 9 7 2 11 11 N 1.34778 * 120.00064 * 174.93438 * 9 7 2 12 12 C 1.46928 * 120.63365 * 185.27429 * 11 9 7 13 13 C 1.53193 * 108.77233 * 233.63347 * 12 11 9 14 14 C 1.53041 * 109.31345 * 305.35970 * 13 12 11 15 15 C 1.50696 * 109.46415 * 181.38975 * 14 13 12 16 16 O 1.21301 * 119.99803 * 359.97202 * 15 14 13 17 17 N 1.34770 * 120.00310 * 179.97438 * 15 14 13 18 18 C 1.40108 * 120.00138 * 185.08894 * 17 15 14 19 19 C 1.38853 * 120.01476 * 33.37469 * 18 17 15 20 20 C 1.38087 * 119.98370 * 180.02562 * 19 18 17 21 21 C 1.38719 * 120.01743 * 0.02562 * 20 19 18 22 22 O 1.35966 * 119.98575 * 179.97438 * 21 20 19 23 23 C 1.38722 * 120.02907 * 0.22984 * 21 20 19 24 24 C 1.38085 * 120.01471 * 359.48981 * 23 21 20 25 25 C 1.53046 * 109.52627 * 61.37314 * 14 13 12 26 26 C 1.46933 * 120.63139 * 5.29299 * 11 9 7 27 27 H 0.97008 * 120.00142 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.58912 * 113.84610 * 12 11 9 29 29 H 1.08994 * 109.70234 * 353.48429 * 12 11 9 30 30 H 1.09003 * 109.49504 * 185.41218 * 13 12 11 31 31 H 1.09000 * 109.50530 * 65.31510 * 13 12 11 32 32 H 1.09006 * 109.46121 * 301.36459 * 14 13 12 33 33 H 0.97005 * 120.00371 * 5.09155 * 17 15 14 34 34 H 1.07998 * 120.00413 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.98860 * 179.97438 * 20 19 18 36 36 H 0.96700 * 114.00196 * 90.00152 * 22 21 20 37 37 H 1.08003 * 119.99305 * 179.72546 * 23 21 20 38 38 H 1.08002 * 120.00783 * 180.23487 * 24 23 21 39 39 H 1.09001 * 109.49014 * 58.58261 * 25 14 13 40 40 H 1.09000 * 109.49495 * 178.67383 * 25 14 13 41 41 H 1.08989 * 109.58836 * 246.16174 * 26 11 9 42 42 H 1.09001 * 109.58133 * 6.44436 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0944 1.6963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4826 0.0932 11 7 1.9449 -3.6455 -0.1020 12 6 1.2200 -4.9181 -0.2194 13 6 1.7206 -5.8728 0.8691 14 6 3.2419 -6.0043 0.7666 15 6 3.7342 -6.9692 1.8141 16 8 2.9462 -7.4992 2.5687 17 7 5.0501 -7.2434 1.9126 18 6 5.4969 -8.2189 2.8135 19 6 4.7103 -9.3321 3.0784 20 6 5.1511 -10.2929 3.9668 21 6 6.3792 -10.1461 4.5950 22 8 6.8124 -11.0923 5.4700 23 6 7.1632 -9.0316 4.3347 24 6 6.7263 -8.0729 3.4422 25 6 3.8898 -4.6357 0.9892 26 6 3.4141 -3.6671 -0.0981 27 1 -0.4851 0.8401 -0.0004 28 1 1.4043 -5.3544 -1.2011 29 1 0.1515 -4.7456 -0.0909 30 1 1.2609 -6.8518 0.7337 31 1 1.4548 -5.4781 1.8497 32 1 3.5085 -6.3755 -0.2231 33 1 5.6879 -6.7652 1.3598 34 1 3.7537 -9.4459 2.5904 35 1 4.5392 -11.1586 4.1733 36 1 7.3286 -11.8000 5.0604 37 1 8.1173 -8.9157 4.8275 38 1 7.3385 -7.2072 3.2368 39 1 3.6033 -4.2527 1.9687 40 1 4.9742 -4.7342 0.9395 41 1 3.7772 -4.0012 -1.0699 42 1 3.7936 -2.6666 0.1095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330890272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:18 Heat of formation + Delta-G solvation = -87.645470 kcal Electronic energy + Delta-G solvation = -25946.325582 eV Core-core repulsion = 22084.346264 eV Total energy + Delta-G solvation = -3861.979318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90625 -39.54061 -38.27650 -37.00880 -35.65425 -34.46102 -32.62605 -31.94361 -31.27721 -30.67191 -28.78794 -26.61841 -25.14844 -23.39856 -22.85320 -22.48453 -21.23392 -20.13331 -18.94871 -18.69342 -18.00078 -17.16965 -16.67693 -15.86590 -15.70538 -15.57454 -14.99132 -14.67223 -14.42879 -14.30627 -14.09193 -13.92873 -13.71347 -13.34764 -13.22505 -12.91127 -12.54435 -12.43864 -12.29464 -11.87685 -11.66016 -11.39296 -11.16940 -10.93788 -10.83788 -10.81749 -10.69186 -10.41321 -10.39155 -10.24012 -9.94601 -9.70093 -9.25451 -8.88287 -8.22496 -7.61888 -7.28602 -6.22830 -4.68602 0.88307 1.07564 2.46970 2.84839 3.12413 3.17794 3.19239 3.40507 3.95873 4.05031 4.45064 4.48456 4.56368 4.67447 4.67618 4.89111 4.94708 5.03835 5.22575 5.27915 5.39218 5.52445 5.68523 5.70544 5.75169 5.78646 5.85710 5.92829 6.03845 6.15271 6.15752 6.19036 6.23274 6.35381 6.44806 6.56455 6.62663 6.73727 7.17656 7.36452 7.41376 7.57191 7.98914 8.08579 8.30274 8.98361 9.39081 10.54274 10.72727 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.002491 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.874036 B =11237.201971 C =11895.354542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.644 5.644 12 C 0.120 3.880 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.520 3.480 16 O -0.516 6.516 17 N -0.678 5.678 18 C 0.146 3.854 19 C -0.107 4.107 20 C -0.124 4.124 21 C 0.081 3.919 22 O -0.499 6.499 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.127 4.127 26 C 0.125 3.875 27 H 0.269 0.731 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.412 0.588 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.387 0.613 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.060 -17.502 2.581 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.459 6.459 11 N -0.382 5.382 12 C -0.004 4.004 13 C -0.150 4.150 14 C -0.121 4.121 15 C 0.309 3.691 16 O -0.390 6.390 17 N -0.324 5.324 18 C 0.052 3.948 19 C -0.127 4.127 20 C -0.143 4.143 21 C 0.036 3.964 22 O -0.309 6.309 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.166 4.166 26 C 0.000 4.000 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.248 0.752 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.242 0.758 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.252 -17.364 3.534 23.380 hybrid contribution 1.243 0.646 -0.514 1.492 sum 16.495 -16.718 3.019 23.679 Atomic orbital electron populations 1.69999 1.07077 1.27469 1.35003 1.25731 0.94620 1.00309 0.92608 0.86454 0.79869 0.81149 0.79421 1.19250 1.20545 1.19263 1.20928 0.93473 0.89267 1.54539 0.90970 1.18250 0.86933 0.82202 0.76089 1.90598 1.14423 1.86047 1.54811 1.48220 1.04469 1.05977 1.79539 1.21154 0.99004 0.84803 0.95459 1.21780 0.91654 1.00106 1.01475 1.21384 0.98796 0.94668 0.97280 1.21225 0.81099 0.81944 0.84882 1.90712 1.54605 1.51442 1.42263 1.43744 1.09033 1.38917 1.40666 1.17838 0.94456 0.89261 0.93272 1.21089 1.00705 0.91766 0.99158 1.21324 0.96305 1.00174 0.96499 1.18434 0.93651 0.91134 0.93150 1.84869 1.73954 1.37374 1.34699 1.21182 1.00350 0.94650 0.98176 1.20792 0.96634 1.00181 0.97713 1.22023 0.98741 0.93692 1.02133 1.21380 0.82991 1.00046 0.95572 0.91979 0.93906 0.89338 0.91249 0.90991 0.88299 0.75172 0.84287 0.85126 0.75817 0.85098 0.85114 0.90895 0.91635 0.93675 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.84 55.55 0.66 -22.05 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.61 29.56 -169.99 -5.02 14.58 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.55 -14.84 8.86 -35.63 -0.32 -15.15 16 8 H 0.07 1.75 5.69 -52.49 -0.30 1.45 16 9 C 0.56 15.57 7.62 -12.99 -0.10 15.47 16 10 O -0.58 -18.49 14.46 5.20 0.08 -18.41 16 11 N -0.64 -13.98 2.97 -174.43 -0.52 -14.49 16 12 C 0.12 2.27 6.44 -3.71 -0.02 2.25 16 13 C -0.11 -1.79 4.65 -26.61 -0.12 -1.91 16 14 C -0.10 -1.29 2.50 -91.73 -0.23 -1.52 16 15 C 0.52 6.83 6.90 -10.99 -0.08 6.76 16 16 O -0.52 -8.63 13.66 5.54 0.08 -8.55 16 17 N -0.68 -6.83 5.27 -9.83 -0.05 -6.88 16 18 C 0.15 1.58 6.28 -83.62 -0.53 1.06 16 19 C -0.11 -1.25 8.65 -39.41 -0.34 -1.59 16 20 C -0.12 -1.28 9.98 -39.46 -0.39 -1.67 16 21 C 0.08 0.78 6.70 -39.22 -0.26 0.52 16 22 O -0.50 -4.20 13.50 -19.63 -0.27 -4.46 16 23 C -0.12 -1.10 9.98 -39.46 -0.39 -1.49 16 24 C -0.13 -1.19 9.96 -39.41 -0.39 -1.59 16 25 C -0.13 -1.68 5.27 -26.61 -0.14 -1.82 16 26 C 0.12 2.08 6.32 -3.71 -0.02 2.05 16 27 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 30 H 0.07 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.41 2.84 8.08 -40.82 -0.33 2.51 16 34 H 0.14 1.78 6.41 -52.49 -0.34 1.44 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.39 1.26 9.06 45.56 0.41 1.67 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 0.61 7.42 -51.93 -0.39 0.23 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 1.72 5.37 -51.93 -0.28 1.45 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -37.29 348.44 -7.75 -45.04 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.51 Total: 6.32 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -3.44 Total: 3.65 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.09 Total: -43.42 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.11 Total: -31.43 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.29 -7.75 -45.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330890272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.604 kcal (2) G-P(sol) polarization free energy of solvation -37.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds