Wall clock time and date at job start Tue Mar 31 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48501 * 109.47118 * 239.99713 * 3 2 1 5 5 H 1.48497 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46921 * 119.99773 * 3 2 1 7 7 C 1.40051 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00462 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99681 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00516 * 354.93261 * 9 7 2 11 11 N 1.34778 * 120.00064 * 174.93438 * 9 7 2 12 12 C 1.46928 * 120.63365 * 185.27429 * 11 9 7 13 13 C 1.53193 * 108.77233 * 233.63347 * 12 11 9 14 14 C 1.53041 * 109.31345 * 305.35970 * 13 12 11 15 15 C 1.50696 * 109.46415 * 181.38975 * 14 13 12 16 16 O 1.21301 * 119.99803 * 359.97202 * 15 14 13 17 17 N 1.34770 * 120.00310 * 179.97438 * 15 14 13 18 18 C 1.40108 * 120.00138 * 185.08894 * 17 15 14 19 19 C 1.38853 * 120.01476 * 33.37469 * 18 17 15 20 20 C 1.38087 * 119.98370 * 180.02562 * 19 18 17 21 21 C 1.38719 * 120.01743 * 0.02562 * 20 19 18 22 22 O 1.35966 * 119.98575 * 179.97438 * 21 20 19 23 23 C 1.38722 * 120.02907 * 0.22984 * 21 20 19 24 24 C 1.38085 * 120.01471 * 359.48981 * 23 21 20 25 25 C 1.53046 * 109.52627 * 61.37314 * 14 13 12 26 26 C 1.46933 * 120.63139 * 5.29299 * 11 9 7 27 27 H 0.97008 * 120.00142 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.58912 * 113.84610 * 12 11 9 29 29 H 1.08994 * 109.70234 * 353.48429 * 12 11 9 30 30 H 1.09003 * 109.49504 * 185.41218 * 13 12 11 31 31 H 1.09000 * 109.50530 * 65.31510 * 13 12 11 32 32 H 1.09006 * 109.46121 * 301.36459 * 14 13 12 33 33 H 0.97005 * 120.00371 * 5.09155 * 17 15 14 34 34 H 1.07998 * 120.00413 * 359.97438 * 19 18 17 35 35 H 1.07999 * 119.98860 * 179.97438 * 20 19 18 36 36 H 0.96700 * 114.00196 * 90.00152 * 22 21 20 37 37 H 1.08003 * 119.99305 * 179.72546 * 23 21 20 38 38 H 1.08002 * 120.00783 * 180.23487 * 24 23 21 39 39 H 1.09001 * 109.49014 * 58.58261 * 25 14 13 40 40 H 1.09000 * 109.49495 * 178.67383 * 25 14 13 41 41 H 1.08989 * 109.58836 * 246.16174 * 26 11 9 42 42 H 1.09001 * 109.58133 * 6.44436 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0944 1.6963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4826 0.0932 11 7 1.9449 -3.6455 -0.1020 12 6 1.2200 -4.9181 -0.2194 13 6 1.7206 -5.8728 0.8691 14 6 3.2419 -6.0043 0.7666 15 6 3.7342 -6.9692 1.8141 16 8 2.9462 -7.4992 2.5687 17 7 5.0501 -7.2434 1.9126 18 6 5.4969 -8.2189 2.8135 19 6 4.7103 -9.3321 3.0784 20 6 5.1511 -10.2929 3.9668 21 6 6.3792 -10.1461 4.5950 22 8 6.8124 -11.0923 5.4700 23 6 7.1632 -9.0316 4.3347 24 6 6.7263 -8.0729 3.4422 25 6 3.8898 -4.6357 0.9892 26 6 3.4141 -3.6671 -0.0981 27 1 -0.4851 0.8401 -0.0004 28 1 1.4043 -5.3544 -1.2011 29 1 0.1515 -4.7456 -0.0909 30 1 1.2609 -6.8518 0.7337 31 1 1.4548 -5.4781 1.8497 32 1 3.5085 -6.3755 -0.2231 33 1 5.6879 -6.7652 1.3598 34 1 3.7537 -9.4459 2.5904 35 1 4.5392 -11.1586 4.1733 36 1 7.3286 -11.8000 5.0604 37 1 8.1173 -8.9157 4.8275 38 1 7.3385 -7.2072 3.2368 39 1 3.6033 -4.2527 1.9687 40 1 4.9742 -4.7342 0.9395 41 1 3.7772 -4.0012 -1.0699 42 1 3.7936 -2.6666 0.1095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330890272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:17 Heat of formation + Delta-G solvation = -116.609812 kcal Electronic energy + Delta-G solvation = -25947.581570 eV Core-core repulsion = 22084.346264 eV Total energy + Delta-G solvation = -3863.235306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85511 -40.48558 -39.75118 -37.92318 -37.30536 -35.35549 -34.66132 -33.51997 -32.06167 -31.99714 -29.66118 -28.53165 -26.55385 -24.29664 -24.06673 -23.49485 -22.51688 -21.36361 -20.48657 -19.36201 -18.93076 -18.45371 -18.13173 -17.62022 -16.63535 -16.37726 -16.28426 -16.00892 -15.89959 -15.52476 -15.41560 -15.06673 -14.75143 -14.52788 -14.31547 -14.21229 -13.82174 -13.50381 -13.33244 -13.27345 -13.04750 -12.94448 -12.76499 -12.62309 -12.46869 -12.17945 -11.98360 -11.67835 -11.51994 -11.47969 -11.23672 -10.90219 -10.80235 -9.99331 -9.75816 -9.07020 -8.99813 -8.26659 -6.81393 0.13142 0.34743 1.41570 1.45190 1.49907 1.56592 1.97290 2.25511 2.48643 2.69058 2.88968 3.33883 3.48723 3.62759 3.76335 3.81132 3.94027 3.99573 4.21198 4.27524 4.35090 4.39394 4.52459 4.57193 4.58108 4.79272 4.86729 4.88714 4.96752 4.99520 5.02377 5.11012 5.15732 5.30121 5.37742 5.42307 5.43672 5.45529 5.80557 5.89595 6.18170 6.38581 6.43000 6.88778 6.90185 7.08914 7.46458 8.49994 8.70140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.002491 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.874036 B =11237.201971 C =11895.354542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.025 3.975 3 Si 0.996 3.004 4 H -0.249 1.249 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.567 4.567 8 H 0.100 0.900 9 C 0.538 3.462 10 O -0.637 6.637 11 N -0.647 5.647 12 C 0.120 3.880 13 C -0.101 4.101 14 C -0.090 4.090 15 C 0.523 3.477 16 O -0.561 6.561 17 N -0.658 5.658 18 C 0.125 3.875 19 C -0.125 4.125 20 C -0.138 4.138 21 C 0.082 3.918 22 O -0.510 6.510 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.116 4.116 26 C 0.117 3.883 27 H 0.272 0.728 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.137 0.863 33 H 0.430 0.570 34 H 0.119 0.881 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.044 0.956 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.835 -17.628 2.176 28.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.189 4.189 3 Si 0.815 3.185 4 H -0.172 1.172 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.603 4.603 8 H 0.118 0.882 9 C 0.344 3.656 10 O -0.525 6.525 11 N -0.384 5.384 12 C -0.004 4.004 13 C -0.140 4.140 14 C -0.111 4.111 15 C 0.312 3.688 16 O -0.438 6.438 17 N -0.305 5.305 18 C 0.031 3.969 19 C -0.146 4.146 20 C -0.157 4.157 21 C 0.037 3.963 22 O -0.323 6.323 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.155 4.155 26 C -0.005 4.005 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.155 0.845 33 H 0.270 0.730 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.268 0.732 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.063 0.937 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.145 -17.558 3.105 26.903 hybrid contribution -0.194 0.504 -0.347 0.642 sum 19.951 -17.054 2.757 26.391 Atomic orbital electron populations 1.70206 1.09718 1.28864 1.36799 1.27051 0.95469 1.05160 0.91261 0.85093 0.78199 0.74686 0.80478 1.17227 1.20512 1.17801 1.21506 0.94976 0.89549 1.54311 0.88212 1.18730 0.86557 0.84437 0.75836 1.90545 1.17026 1.87500 1.57441 1.48102 1.06952 1.05189 1.78156 1.21226 0.96627 0.84472 0.98030 1.21588 0.94852 0.99355 0.98206 1.21291 0.95803 0.94802 0.99233 1.21128 0.81856 0.81526 0.84268 1.90714 1.56010 1.53199 1.43854 1.43463 1.08147 1.38426 1.40427 1.17991 0.95318 0.89246 0.94317 1.21056 1.00389 0.93076 1.00048 1.21436 0.97097 1.00346 0.96825 1.18560 0.93398 0.91765 0.92559 1.84807 1.74423 1.38058 1.35012 1.21493 1.01096 0.94010 0.97950 1.21086 0.95773 1.00840 0.96619 1.21945 1.01857 0.92475 0.99196 1.21685 0.79490 1.00774 0.98595 0.91779 0.90789 0.93600 0.90130 0.94704 0.84543 0.73003 0.86289 0.84673 0.73172 0.82750 0.82225 0.93740 0.86219 0.90176 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -50.99 11.84 21.84 0.26 -50.73 16 2 C 0.03 1.39 5.50 85.31 0.47 1.86 16 3 Si 1.00 40.05 29.56 68.60 2.03 42.07 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.57 -31.22 8.86 24.83 0.22 -31.00 16 8 H 0.10 4.73 5.69 -2.91 -0.02 4.72 16 9 C 0.54 31.16 7.62 86.36 0.66 31.82 16 10 O -0.64 -43.60 14.46 -4.32 -0.06 -43.66 16 11 N -0.65 -28.41 2.97 -823.99 -2.45 -30.85 16 12 C 0.12 4.65 6.44 86.36 0.56 5.21 16 13 C -0.10 -3.29 4.65 30.67 0.14 -3.15 16 14 C -0.09 -2.10 2.50 -11.51 -0.03 -2.13 16 15 C 0.52 12.88 6.90 87.66 0.60 13.48 16 16 O -0.56 -18.90 13.66 -3.10 -0.04 -18.94 16 17 N -0.66 -11.27 5.27 -303.39 -1.60 -12.87 16 18 C 0.13 2.45 6.28 38.11 0.24 2.69 16 19 C -0.13 -2.88 8.65 22.38 0.19 -2.68 16 20 C -0.14 -2.76 9.98 22.35 0.22 -2.54 16 21 C 0.08 1.43 6.70 22.50 0.15 1.58 16 22 O -0.51 -7.45 13.50 -93.17 -1.26 -8.71 16 23 C -0.13 -1.84 9.98 22.35 0.22 -1.61 16 24 C -0.12 -1.79 9.96 22.38 0.22 -1.56 16 25 C -0.12 -2.73 5.27 30.67 0.16 -2.56 16 26 C 0.12 3.61 6.32 86.36 0.55 4.16 16 27 H 0.27 15.33 8.29 -92.70 -0.77 14.56 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 2.15 7.00 -2.39 -0.02 2.14 16 30 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 31 H 0.03 1.37 8.13 -2.39 -0.02 1.36 16 32 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.43 3.88 8.08 -92.70 -0.75 3.13 16 34 H 0.12 3.16 6.41 -2.91 -0.02 3.15 16 35 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.41 1.68 9.06 -74.06 -0.67 1.00 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.56 7.42 -2.39 -0.02 1.55 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.09 2.86 5.37 -2.39 -0.01 2.85 16 Total: -1.00 -89.09 348.44 1.12 -87.97 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.34 Total: 22.17 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 4.58 Total: 13.55 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.79 Total: -94.45 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: -1.36 Total: -71.31 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -89.09 1.12 -87.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330890272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.638 kcal (2) G-P(sol) polarization free energy of solvation -89.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds